Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0013505

Physical Location & Seq

Genomic Coordinates Forward (+)

83822057 .. 83825592

Gene Structure 3536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG611300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2019 bp

ATGTGTACATCCTCGCTCTCTTCAGCTCCAACTCCTTCTTCTTCCTTCTCATTTCCATCACTGCCCCCCACCAAGGCCCACAATTACACCGCCACACCCTTCACCTTCACCACCCACAAACCCAGACTCTGCTCCCCCCTTATCTCCTCCGCTTCCAAAGATGTCTGGAGAAGAACACCACCCCACCCCAAAACGACGCCGTCTCAACCCTCCCGCCACCGCCGCAAGCTCCAAGGCACCACCTTCCTGGACCACAGCGTCGACATGGACGACCTCACCGCCTCAATCCGCGCCACCCAAAACGAGCACGACCTCAACTCCCTCCTCTCCCCCTACAAGTCCCGCAGCCTCTCCATCCGCTTCATGGTCTCCCTCCTCTCCCGCGAGCCCGACTGGCGCCGCTCCCTCGCCATCCTCGACTGGATCAACGACGTCGCCCTATACTCTCCCTCCGTCTTCGCCTACAACGTCGTCATCCGCAATGTCCTTCGCGCCAAGCAGTGGGAAGTCGCCCACGGCCTGTTCGACGAAATGCGCCACAGAGCTCTGGCGCCGGACCGCTACACTTACTCCACTCTCATCACCGCGTTTGGGAAGTCCGGCATGTTCGACGCCGCGCTCTCGTGGCTGCAGAAGATGGAGGAGGACCGTGTCTCCGGGGACCTGGTGCTGTATAGCAACTTGATTGAGCTGTCTAGGAAACTGTGTGATTATAGCAAAGCGATTTCGATATTTTCCAGGCTGAAGAGGTTGGGGATAATGCCGGATTTGGTGGCTTATAACTCGATGATCAATGTGTTTGGTAAGGCCAAGTTGTTTAGGGAGGCCAGGGTTTTGCTGAAGGAGATGAGGGCGGTGGGGGTTTTGCCGGACACTGTTAGCTACTCGACGCTTTTGACAATGTACATTGAGAATGAGAAGTTTGTGGAGGCGTTGGCTGTGTTCTCGGAGATGAATGAGGTCAAGTGTCCGCTTGATCTCACGACGTGTAATATTATGATTGATGTTTATGGGCAGCTGGATATGGCGAAGGAGGCTGATAGGTTGTTTTGGAGCATGAGGAAGATGGGGCTTGAGCCGAATGTTGTTAGTTACAATACTCTTTTGAGGGTTTATGGCGATGCTGAGCTTTTCGGGGAAGCCATTCATCTTTTTCGAATGATGCAGAGAATGGATGTGGAGCAGAATGTTGTCACGTACAATACGATGATTAGGATTTATGGGAAGTCGCTTGAGCATGAAAAGGCTACAAATCTTGTGCAGGAAATGCAGAAGAGGGGGATTCAGCCGAATGCCATTACATACTCGACGATTATATCTATATGGGGTAGGGCTGGGAAATTGGACAGGGCGGCAATGCTGTTTCAAAAGCTGAGGAGCTCCGGGGTTGAGATTGATCAGGTTCTTTATCAGACAATGATTGTATCTTATGAGAGAGTAGGTTTGGTTGCTCATGCTAAGCGCTTGCTTCATGAGCTTAAGCGCCCAGACAATATCCCGAGGGAGACTGCAATTACCATTCTTGCTGGAGCTGGTCGTGTAGAAGAGGCTACATGGGTTTTCCGTCAGGCTTTCGAGGCTGGGGAGGTGAAGGATATAGCTGTATTTGGTTGTATGATTGAGCTTTTCTCAAGAAACCGGAAGTATGCAAATTGCATTGAAGTGTTTGAAAATATGAGAGTGGCAGGATACTTTCCTGCTTCCCATGTGATTGGTCTAGTTCTCAACGCATATGGAAAGTTACGGGAGTTTGAGAAGGCTGATGCTGTATATAGGGAGATGCAGGAAGAAGGGTGTGTTTTCTCCGATGAAGTTCACTTCCAAATGCTCAGTCTTTATGGTGCAAGAAAGGACTTTAAGACGGTAGAGGCAATGTTTGGGAGGCTGGTCTCCGATCCCAACATCAACAAAAAGGAGTTGCATCTTGTTGTTGCTGGCATCTATGAAAGATCAAACAGACTTAATGACTCATACCGGATCATGAACAGGATGAATGAAAGTCGAGCTTTGAAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0031967 GO:0031975 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

672

Amino Acids

76.8

Weight (kDa)

9.08

Isoelectric Point (pI)

36.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	150 - 199	1.2e-13	PPR repeat family
PPR	PF01535	188 - 217	1.1e-06	PPR repeat
PPR_3	PF13812	210 - 269	4.9e-08	Pentatricopeptide repeat domain
PPR_long	PF17177	240 - 323	6.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	252 - 284	5.2e-06	PPR repeat
PPR_2	PF13041	255 - 301	4.4e-11	PPR repeat family
PPR	PF01535	258 - 287	2.6e-06	PPR repeat
PPR_3	PF13812	279 - 339	5.2e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	290 - 336	4e-10	PPR repeat family
PPR_3	PF13812	325 - 374	2.8e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	326 - 372	2.3e-10	PPR repeat family
PPR_long	PF17177	348 - 509	8.2e-12	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	360 - 405	2.3e-11	PPR repeat family
PPR_3	PF13812	384 - 443	5.9e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	396 - 440	6.2e-15	PPR repeat family
PPR	PF01535	398 - 428	5e-07	PPR repeat
PPR_1	PF12854	426 - 457	2.9e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39980
fragaria_vesca	FvH4_6g49520
malus_domestica	MD09G1044200.v1.1
prunus_persica	Prupe.3G273600_v2.0.a1
pyrus_communis	pycom111g03450
rosa_chinensis	RchiOBHm_Chr2g0169431
rosa_laevigata	RLG00000021863
rosa_multiflora	Rmu_co8342305.1_g000001 Rmu_sc0004665.1_g000014 Rmu_sc0004665.1_g000015 Rmu_sc0006806.1_g000040
rosa_roxburghii	Rroxscaffold_2G00082130 Rroxscaffold_3G00240790
rosa_samantha	Rh2AG611300 Rh2BG624900 Rh2CG593300 Rh2DG635500
rosa_wichuraiana	Rw2G050730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	780
AasI	GACNNNNNNGTC	1 cut(s)	257
AatII	GACGTC	1 cut(s)	435
AccB1I	GGYRCC	3 cut(s)	236, 396, 550
AccB7I	CCANNNNNTGG	1 cut(s)	501
AccBSI	CCGCTC	1 cut(s)	402
AccI	GTMKAC	1 cut(s)	261
AccII	CGCG	5 cut(s)	291, 384, 492, 587, 617
AclWI	GGATC	3 cut(s)	431, 1889, 1985
AcuI	CTGAAG	3 cut(s)	6, 764, 860
AcyI	GRCGYC	5 cut(s)	197, 397, 432, 551, 612
AdeI	CACNNNGTG	1 cut(s)	987
AfaI	GTAC	3 cut(s)	7, 905, 1199
AfeI	AGCGCT	1 cut(s)	1463
AfiI	CCNNNNNNNGG	4 cut(s)	73, 364, 501, 591
AflII	CTTAAG	1 cut(s)	1478
AflIII	ACRYGT	1 cut(s)	986
AgsI	TTSAA	4 cut(s)	1367, 1661, 1670, 2011
AjiI	CACGTC	1 cut(s)	987
AjnI	CCWGG	4 cut(s)	246, 663, 737, 827
AjuI	GAANNNNNNNTTGG	2 cut(s)	22, 54
Alw21I	GWGCWC	3 cut(s)	309, 547, 1382
Alw26I	GTCTC	5 cut(s)	207, 373, 658, 1499, 1894
AlwI	GGATC	3 cut(s)	431, 1889, 1985
AlwNI	CAGNNNCTG	1 cut(s)	129
Ama87I	CYCGRG	1 cut(s)	1498
Aor51HI	AGCGCT	1 cut(s)	1463
AoxI	GGCC	4 cut(s)	75, 517, 807, 825
ApeKI	GCWGC	3 cut(s)	345, 628, 1015
ArsI	GACNNNNNNTTYG	2 cut(s)	1816, 1848
Asp700I	GAANNNNTTC	1 cut(s)	1143
AspLEI	GCGC	8 cut(s)	293, 399, 494, 537, 553, 619, 1464, 1485
AspS9I	GGNCC	5 cut(s)	76, 250, 556, 646, 661
AsuC2I	CCSGG	2 cut(s)	658, 1384
AsuHPI	GGTGA	5 cut(s)	94, 100, 268, 574, 1600
AsuII	TTCGAA	1 cut(s)	1156
AvaI	CYCGRG	1 cut(s)	1498
AvaII	GGWCC	4 cut(s)	250, 556, 646, 661
BanI	GGYRCC	3 cut(s)	236, 396, 550
BanII	GRGCYC	3 cut(s)	390, 547, 1382
BauI	CACGAG	1 cut(s)	622
BbsI	GAAGAC	1 cut(s)	448
Bbv12I	GWGCWC	3 cut(s)	309, 547, 1382
BbvCI	CCTCAGC	1 cut(s)	1373
BbvI	GCAGC	3 cut(s)	357, 615, 1027
BccI	CCATC	5 cut(s)	64, 362, 419, 631, 1060
BceAI	ACGGC	2 cut(s)	184, 532
BciT130I	CCWGG	4 cut(s)	248, 665, 739, 829
BciVI	GTATCC	1 cut(s)	1682
BclI	TGATCA	2 cut(s)	789, 1396
BcnI	CCSGG	2 cut(s)	658, 1384
BcoDI	GTCTC	5 cut(s)	207, 373, 658, 1499, 1894
BfaI	CTAG	2 cut(s)	696, 1718
BfmI	CTRYAG	1 cut(s)	629
BfoI	RGCGCY	4 cut(s)	400, 554, 1465, 1486
BfrI	CTTAAG	1 cut(s)	1478
BfuI	GTATCC	1 cut(s)	1682
BglI	GCCNNNNNGGC	1 cut(s)	394
BisI	GCNGC	7 cut(s)	223, 346, 400, 615, 629, 1016, 1353
BlpI	GCTNAGC	2 cut(s)	1125, 1458
BlsI	GCNGC	7 cut(s)	224, 347, 401, 616, 630, 1017, 1354
Bme1390I	CCNGG	6 cut(s)	248, 658, 665, 739, 829, 1384
Bme18I	GGWCC	4 cut(s)	250, 556, 646, 661
BmeT110I	CYCGRG	1 cut(s)	1498
BmgBI	CACGTC	1 cut(s)	987
BmgT120I	GGNCC	5 cut(s)	76, 250, 556, 646, 661
BmiI	GGNNCC	4 cut(s)	238, 398, 552, 662
BmrFI	CCNGG	6 cut(s)	248, 658, 665, 739, 829, 1384
BmsI	GCATC	6 cut(s)	1111, 1152, 1753, 1770, 1930, 1947
BpiI	GAAGAC	1 cut(s)	448
BplI	GAGNNNNNCTC	2 cut(s)	1613, 1645
BpmI	CTGGAG	2 cut(s)	187, 1548
Bpu10I	CCTNAGC	1 cut(s)	1373
Bpu1102I	GCTNAGC	2 cut(s)	1125, 1458
Bpu14I	TTCGAA	1 cut(s)	1156
BpuEI	CTTGAG	3 cut(s)	1094, 1253, 1615
BpuMI	CCSGG	2 cut(s)	658, 1384
BsaAI	YACGTR	1 cut(s)	1197
BsaHI	GRCGYC	5 cut(s)	197, 397, 432, 551, 612
BsaI	GGTCTC	2 cut(s)	373, 1894
BsaJI	CCNNGG	7 cut(s)	72, 232, 514, 657, 828, 1383, 1499
BsaWI	WCCGGW	2 cut(s)	1638, 1974
BsaXI	ACNNNNNCTCC	8 cut(s)	302, 332, 434, 464, 554, 584, 638, 668
Bsc4I	CCNNNNNNNGG	4 cut(s)	73, 364, 501, 591
Bse1I	ACTGG	2 cut(s)	398, 425
Bse3DI	GCAATG	3 cut(s)	487, 1362, 1878
BseBI	CCWGG	4 cut(s)	248, 665, 739, 829
BseDI	CCNNGG	7 cut(s)	72, 232, 514, 657, 828, 1383, 1499
BseGI	GGATG	6 cut(s)	8, 354, 411, 474, 1180, 1995
BseLI	CCNNNNNNNGG	4 cut(s)	73, 364, 501, 591
BseMI	GCAATG	3 cut(s)	487, 1362, 1878
BseMII	CTCAG	3 cut(s)	1116, 1364, 1843
BseNI	ACTGG	2 cut(s)	398, 425
BseRI	GAGGAG	5 cut(s)	136, 314, 365, 656, 1390
BseXI	GCAGC	3 cut(s)	357, 615, 1027
BseYI	CCCAGC	2 cut(s)	1334, 1580
BsgI	GTGCAG	1 cut(s)	1280
Bsh1236I	CGCG	5 cut(s)	291, 384, 492, 587, 617
BshFI	GGCC	4 cut(s)	77, 519, 809, 827
BshNI	GGYRCC	3 cut(s)	236, 396, 550
BsiHKAI	GWGCWC	3 cut(s)	309, 547, 1382
BsiHKCI	CYCGRG	1 cut(s)	1498
BsiSI	CCGG	8 cut(s)	554, 600, 657, 764, 869, 1383, 1639, 1975
BslFI	GGGAC	2 cut(s)	325, 674
BslI	CCNNNNNNNGG	4 cut(s)	73, 364, 501, 591
BsmAI	GTCTC	5 cut(s)	207, 373, 658, 1499, 1894
BsmBI	CGTCTC	1 cut(s)	207
BsmFI	GGGAC	2 cut(s)	325, 674
BsmI	GAATGC	1 cut(s)	1297
BsnI	GGCC	4 cut(s)	77, 519, 809, 827
Bso31I	GGTCTC	2 cut(s)	373, 1894
BsoBI	CYCGRG	1 cut(s)	1498
Bsp119I	TTCGAA	1 cut(s)	1156
Bsp1286I	GDGCHC	4 cut(s)	309, 390, 547, 1382
Bsp1407I	TGTACA	2 cut(s)	5, 903
Bsp143I	GATC	7 cut(s)	423, 789, 976, 1396, 1894, 1949, 1977
Bsp1720I	GCTNAGC	2 cut(s)	1125, 1458
BspANI	GGCC	4 cut(s)	77, 519, 809, 827
BspCNI	CTCAG	3 cut(s)	1117, 1365, 1842
BspFNI	CGCG	5 cut(s)	291, 384, 492, 587, 617
BspHI	TCATGA	3 cut(s)	1471, 1980, 2015
BspLI	GGNNCC	4 cut(s)	238, 398, 552, 662
BspMAI	CTGCAG	1 cut(s)	633
BspPI	GGATC	3 cut(s)	431, 1889, 1985
BspT104I	TTCGAA	1 cut(s)	1156
BspT107I	GGYRCC	3 cut(s)	236, 396, 550
BspTI	CTTAAG	1 cut(s)	1478
BspTNI	GGTCTC	2 cut(s)	373, 1894
BsrBI	CCGCTC	1 cut(s)	402
BsrDI	GCAATG	3 cut(s)	487, 1362, 1878
BsrGI	TGTACA	2 cut(s)	5, 903
BsrI	ACTGG	2 cut(s)	398, 425
BssECI	CCNNGG	7 cut(s)	72, 232, 514, 657, 828, 1383, 1499
BssMI	GATC	7 cut(s)	423, 789, 976, 1396, 1894, 1949, 1977
BssNI	GRCGYC	5 cut(s)	197, 397, 432, 551, 612
BssSI	CACGAG	1 cut(s)	622
BssT1I	CCWWGG	2 cut(s)	72, 232
Bst2BI	CACGAG	1 cut(s)	622
Bst2UI	CCWGG	4 cut(s)	248, 665, 739, 829
Bst4CI	ACNGT	4 cut(s)	650, 705, 877, 1864
Bst6I	CTCTTC	4 cut(s)	25, 740, 1268, 1539
BstACI	GRCGYC	5 cut(s)	197, 397, 432, 551, 612
BstAFI	CTTAAG	1 cut(s)	1478
BstAPI	GCANNNNNTGC	1 cut(s)	1267
BstAUI	TGTACA	2 cut(s)	5, 903
BstBAI	YACGTR	1 cut(s)	1197
BstBI	TTCGAA	1 cut(s)	1156
BstC8I	GCNNGC	4 cut(s)	227, 386, 1466, 1936
BstDEI	CTNAG	4 cut(s)	1125, 1373, 1458, 1829
BstDSI	CCRYGG	1 cut(s)	514
BstF5I	GGATG	6 cut(s)	8, 354, 411, 474, 1180, 1995
BstFNI	CGCG	5 cut(s)	291, 384, 492, 587, 617
BstH2I	RGCGCY	4 cut(s)	400, 554, 1465, 1486
BstHHI	GCGC	8 cut(s)	293, 399, 494, 537, 553, 619, 1464, 1485
BstKTI	GATC	7 cut(s)	426, 792, 979, 1399, 1897, 1952, 1980
BstMAI	GTCTC	5 cut(s)	207, 373, 658, 1499, 1894
BstMBI	GATC	7 cut(s)	423, 789, 976, 1396, 1894, 1949, 1977
BstMWI	GCNNNNNNNGC	7 cut(s)	222, 394, 625, 1034, 1267, 1474, 1577
BstNI	CCWGG	4 cut(s)	248, 665, 739, 829
BstNSI	RCATGY	1 cut(s)	607
BstSCI	CCNGG	6 cut(s)	246, 656, 663, 737, 827, 1382
BstSFI	CTRYAG	1 cut(s)	629
BstUI	CGCG	5 cut(s)	291, 384, 492, 587, 617
BstV1I	GCAGC	3 cut(s)	357, 615, 1027
BstV2I	GAAGAC	1 cut(s)	448
BstXI	CCANNNNNNTGG	2 cut(s)	247, 1712
BsuI	GTATCC	1 cut(s)	1682
BsuRI	GGCC	4 cut(s)	77, 519, 809, 827
BtgI	CCRYGG	1 cut(s)	514
BtgZI	GCGATG	1 cut(s)	1134
BtrI	CACGTC	1 cut(s)	987
BtsCI	GGATG	6 cut(s)	8, 354, 411, 474, 1180, 1995
BtsI	GCAGTG	2 cut(s)	59, 506
BtsIMutI	CAGTG	3 cut(s)	59, 506, 873
Cac8I	GCNNGC	4 cut(s)	227, 386, 1466, 1936
CaiI	CAGNNNCTG	1 cut(s)	129
CciI	TCATGA	3 cut(s)	1471, 1980, 2015
CfoI	GCGC	8 cut(s)	293, 399, 494, 537, 553, 619, 1464, 1485
Cfr13I	GGNCC	5 cut(s)	76, 250, 556, 646, 661
CpoI	CGGWCCG	1 cut(s)	556
CseI	GACGC	4 cut(s)	205, 247, 620, 898
CsiI	ACCWGGT	1 cut(s)	663
Csp6I	GTAC	3 cut(s)	6, 904, 1198
CspI	CGGWCCG	1 cut(s)	556
CviQI	GTAC	3 cut(s)	6, 904, 1198
DdeI	CTNAG	4 cut(s)	1125, 1373, 1458, 1829
DinI	GGCGCC	2 cut(s)	398, 552
DpnI	GATC	7 cut(s)	425, 791, 978, 1398, 1896, 1951, 1979
DpnII	GATC	7 cut(s)	423, 789, 976, 1396, 1894, 1949, 1977
DraIII	CACNNNGTG	1 cut(s)	987
DrdI	GACNNNNNNGTC	1 cut(s)	257
DseDI	GACNNNNNNGTC	1 cut(s)	257
Eam1104I	CTCTTC	4 cut(s)	25, 740, 1268, 1539
EarI	CTCTTC	4 cut(s)	25, 740, 1268, 1539
Ecl136II	GAGCTC	2 cut(s)	545, 1380
Eco130I	CCWWGG	2 cut(s)	72, 232
Eco24I	GRGCYC	3 cut(s)	390, 547, 1382
Eco31I	GGTCTC	2 cut(s)	373, 1894
Eco47I	GGWCC	4 cut(s)	250, 556, 646, 661
Eco47III	AGCGCT	1 cut(s)	1463
Eco53kI	GAGCTC	2 cut(s)	545, 1380
Eco57I	CTGAAG	3 cut(s)	6, 764, 860
Eco88I	CYCGRG	1 cut(s)	1498
EcoICRI	GAGCTC	2 cut(s)	545, 1380
EcoO109I	RGGNCCY	1 cut(s)	661
EcoRII	CCWGG	4 cut(s)	246, 663, 737, 827
EcoT14I	CCWWGG	2 cut(s)	72, 232
EcoT38I	GRGCYC	3 cut(s)	390, 547, 1382
EgeI	GGCGCC	2 cut(s)	398, 552
EheI	GGCGCC	2 cut(s)	398, 552
ErhI	CCWWGG	2 cut(s)	72, 232
Esp3I	CGTCTC	1 cut(s)	207
FalI	AAGNNNNNCTT	1 cut(s)	1990
FaqI	GGGAC	2 cut(s)	325, 674
FauI	CCCGC	3 cut(s)	221, 350, 389
FauNDI	CATATG	1 cut(s)	1732
FbaI	TGATCA	2 cut(s)	789, 1396
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	7 cut(s)	223, 346, 400, 615, 629, 1016, 1353
FokI	GGATG	5 cut(s)	341, 398, 461, 1187, 2002
FriOI	GRGCYC	3 cut(s)	390, 547, 1382
Fsp4HI	GCNGC	7 cut(s)	223, 346, 400, 615, 629, 1016, 1353
FspBI	CTAG	2 cut(s)	696, 1718
GlaI	GCGC	8 cut(s)	292, 398, 493, 536, 552, 618, 1463, 1484
GluI	GCNGC	7 cut(s)	223, 346, 400, 615, 629, 1016, 1353
GsaI	CCCAGC	2 cut(s)	1338, 1584
GsuI	CTGGAG	2 cut(s)	187, 1548
HaeII	RGCGCY	4 cut(s)	400, 554, 1465, 1486
HaeIII	GGCC	4 cut(s)	77, 519, 809, 827
HapII	CCGG	8 cut(s)	554, 600, 657, 764, 869, 1383, 1639, 1975
HgaI	GACGC	4 cut(s)	205, 247, 620, 898
HhaI	GCGC	8 cut(s)	293, 399, 494, 537, 553, 619, 1464, 1485
Hin1I	GRCGYC	5 cut(s)	197, 397, 432, 551, 612
Hin6I	GCGC	8 cut(s)	291, 397, 492, 535, 551, 617, 1462, 1483
HinP1I	GCGC	8 cut(s)	291, 397, 492, 535, 551, 617, 1462, 1483
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	3 cut(s)	126, 1282, 1967
HpaII	CCGG	8 cut(s)	554, 600, 657, 764, 869, 1383, 1639, 1975
HphI	GGTGA	5 cut(s)	94, 100, 268, 574, 1600
Hpy166II	GTNNAC	3 cut(s)	6, 262, 1816
Hpy188I	TCNGA	4 cut(s)	949, 1413, 1807, 1894
Hpy188III	TCNNGA	7 cut(s)	166, 982, 1472, 1498, 1632, 1981, 2016
Hpy8I	GTNNAC	3 cut(s)	6, 262, 1816
HpyCH4III	ACNGT	4 cut(s)	650, 705, 877, 1864
HpyCH4IV	ACGT	4 cut(s)	432, 468, 986, 1196
HpyF10VI	GCNNNNNNNGC	7 cut(s)	222, 394, 625, 1034, 1267, 1474, 1577
HpyF3I	CTNAG	4 cut(s)	1125, 1373, 1458, 1829
HpySE526I	ACGT	4 cut(s)	432, 468, 986, 1196
Hsp92I	GRCGYC	5 cut(s)	197, 397, 432, 551, 612
HspAI	GCGC	8 cut(s)	291, 397, 492, 535, 551, 617, 1462, 1483
KasI	GGCGCC	2 cut(s)	396, 550
Ksp22I	TGATCA	2 cut(s)	789, 1396
Kzo9I	GATC	7 cut(s)	423, 789, 976, 1396, 1894, 1949, 1977
LmnI	GCTCC	9 cut(s)	31, 137, 234, 407, 1053, 1180, 1377, 1385, 1529
Lsp1109I	GCAGC	3 cut(s)	357, 615, 1027
LweI	GCATC	6 cut(s)	1111, 1152, 1753, 1770, 1930, 1947
MabI	ACCWGGT	1 cut(s)	663
MaeI	CTAG	2 cut(s)	696, 1718
MaeII	ACGT	4 cut(s)	432, 468, 986, 1196
MaeIII	GTNAC	3 cut(s)	1091, 1192, 1740
MalI	GATC	7 cut(s)	425, 791, 978, 1398, 1896, 1951, 1979
MbiI	CCGCTC	1 cut(s)	402
MboI	GATC	7 cut(s)	423, 789, 976, 1396, 1894, 1949, 1977
MhlI	GDGCHC	4 cut(s)	309, 390, 547, 1382
MluCI	AATT	4 cut(s)	82, 1340, 1512, 1651
Mly113I	GGCGCC	2 cut(s)	397, 551
MlyI	GAGTC	2 cut(s)	120, 1961
MmeI	TCCRAC	1 cut(s)	53
MroXI	GAANNNNTTC	1 cut(s)	1143
MseI	TTAA	3 cut(s)	1479, 1857, 1962
MslI	CAYNNNNRTG	1 cut(s)	1661
MspA1I	CMGCKG	1 cut(s)	1018
MspCI	CTTAAG	1 cut(s)	1478
MspI	CCGG	8 cut(s)	554, 600, 657, 764, 869, 1383, 1639, 1975
MspR9I	CCNGG	6 cut(s)	248, 658, 665, 739, 829, 1384
Mva1269I	GAATGC	1 cut(s)	1297
MvaI	CCWGG	4 cut(s)	248, 665, 739, 829
MvnI	CGCG	5 cut(s)	291, 384, 492, 587, 617
MwoI	GCNNNNNNNGC	7 cut(s)	222, 394, 625, 1034, 1267, 1474, 1577
NarI	GGCGCC	2 cut(s)	397, 551
NciI	CCSGG	2 cut(s)	658, 1384
NdeI	CATATG	1 cut(s)	1732
NdeII	GATC	7 cut(s)	423, 789, 976, 1396, 1894, 1949, 1977
NlaIV	GGNNCC	4 cut(s)	238, 398, 552, 662
NmuCI	GTSAC	1 cut(s)	1192
NspI	RCATGY	1 cut(s)	607
NspV	TTCGAA	1 cut(s)	1156
PagI	TCATGA	3 cut(s)	1471, 1980, 2015
PcsI	WCGNNNNNNNCGW	5 cut(s)	267, 414, 465, 522, 1202
PctI	GAATGC	1 cut(s)	1297
PdmI	GAANNNNTTC	1 cut(s)	1143
PfeI	GAWTC	1 cut(s)	1282
PflFI	GACNNNGTC	2 cut(s)	199, 650
PflMI	CCANNNNNTGG	1 cut(s)	501
PfoI	TCCNGGA	1 cut(s)	246
PkrI	GCNGC	7 cut(s)	224, 347, 401, 616, 630, 1017, 1354
PleI	GAGTC	2 cut(s)	120, 1961
PluTI	GGCGCC	2 cut(s)	400, 554
PpsI	GAGTC	2 cut(s)	120, 1961
Ppu21I	YACGTR	1 cut(s)	1197
PpuMI	RGGWCCY	1 cut(s)	661
PsiI	TTATAA	1 cut(s)	780
Psp124BI	GAGCTC	2 cut(s)	547, 1382
Psp5II	RGGWCCY	1 cut(s)	661
Psp6I	CCWGG	4 cut(s)	246, 663, 737, 827
PspFI	CCCAGC	2 cut(s)	1334, 1580
PspGI	CCWGG	4 cut(s)	246, 663, 737, 827
PspN4I	GGNNCC	4 cut(s)	238, 398, 552, 662
PspPI	GGNCC	5 cut(s)	76, 250, 556, 646, 661
PspPPI	RGGWCCY	1 cut(s)	661
PstI	CTGCAG	1 cut(s)	633
PstNI	CAGNNNCTG	1 cut(s)	129
PsyI	GACNNNGTC	2 cut(s)	199, 650
PvuII	CAGCTG	1 cut(s)	1018
RsaI	GTAC	3 cut(s)	7, 905, 1199
RsaNI	GTAC	3 cut(s)	6, 904, 1198
RseI	CAYNNNNRTG	1 cut(s)	1661
Rsr2I	CGGWCCG	1 cut(s)	556
RsrII	CGGWCCG	1 cut(s)	556
SacI	GAGCTC	2 cut(s)	547, 1382
SalI	GTCGAC	1 cut(s)	260
SaqAI	TTAA	3 cut(s)	1479, 1857, 1962
SatI	GCNGC	7 cut(s)	223, 346, 400, 615, 629, 1016, 1353
Sau3AI	GATC	7 cut(s)	423, 789, 976, 1396, 1894, 1949, 1977
Sau96I	GGNCC	5 cut(s)	76, 250, 556, 646, 661
SchI	GAGTC	2 cut(s)	120, 1961
ScrFI	CCNGG	6 cut(s)	248, 658, 665, 739, 829, 1384
SduI	GDGCHC	4 cut(s)	309, 390, 547, 1382
SexAI	ACCWGGT	1 cut(s)	663
SfaNI	GCATC	6 cut(s)	1111, 1152, 1753, 1770, 1930, 1947
SfcI	CTRYAG	1 cut(s)	629
SfoI	GGCGCC	2 cut(s)	398, 552
SfuI	TTCGAA	1 cut(s)	1156
SinI	GGWCC	4 cut(s)	250, 556, 646, 661
SmiMI	CAYNNNNRTG	1 cut(s)	1661
SmlI	CTYRAG	4 cut(s)	1073, 1232, 1478, 1630
SmoI	CTYRAG	4 cut(s)	1073, 1232, 1478, 1630
Sse9I	AATT	4 cut(s)	82, 1340, 1512, 1651
SspDI	GGCGCC	2 cut(s)	396, 550
SspI	AATATT	1 cut(s)	994
SspMI	CTAG	2 cut(s)	696, 1718
SstI	GAGCTC	2 cut(s)	547, 1382
StyD4I	CCNGG	6 cut(s)	246, 656, 663, 737, 827, 1382
StyI	CCWWGG	2 cut(s)	72, 232
TaaI	ACNGT	4 cut(s)	650, 705, 877, 1864
TaiI	ACGT	4 cut(s)	435, 471, 989, 1199
TasI	AATT	4 cut(s)	82, 1340, 1512, 1651
TatI	WGTACW	2 cut(s)	5, 903
TauI	GCSGC	4 cut(s)	225, 402, 617, 1355
TfiI	GAWTC	1 cut(s)	1282
Tru1I	TTAA	3 cut(s)	1479, 1857, 1962
Tru9I	TTAA	3 cut(s)	1479, 1857, 1962
TscAI	CASTG	3 cut(s)	66, 506, 880
TseFI	GTSAC	1 cut(s)	1192
TseI	GCWGC	3 cut(s)	345, 628, 1015
Tsp45I	GTSAC	1 cut(s)	1192
TspGWI	ACGGA	2 cut(s)	442, 1553
TspRI	CASTG	3 cut(s)	66, 506, 880
Tth111I	GACNNNGTC	2 cut(s)	199, 650
Van91I	CCANNNNNTGG	1 cut(s)	501
Vha464I	CTTAAG	1 cut(s)	1478
VpaK11BI	GGWCC	4 cut(s)	250, 556, 646, 661
XceI	RCATGY	1 cut(s)	607
XcmI	CCANNNNNNNNNTGG	1 cut(s)	361
XmiI	GTMKAC	1 cut(s)	261
XmnI	GAANNNNTTC	1 cut(s)	1143
XspI	CTAG	2 cut(s)	696, 1718
ZraI	GACGTC	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.