Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013505

Physical Location & Seq

Genomic Coordinates Reverse (-)

5003246 .. 5006928

Gene Structure 3683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00082130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2043 bp

ATGTGTACATTCTCGCTATCTGCAACTTCAATGCAAGTATCTCCATGCCCACCTCCCTCTTCTTCCTTCTCATTTCCACTACTACCCCCCACCAAACCCCACAATTACACCGCCACACCCTTCACCTTCACCACCCACAAACCCAGACTCCGCTCCCCCCTAATCTCCTCCGCTTCCAAAGATGTCTGGAGAAGAAAACCACCACACCCCAAAACGACGCCGTCCCAACCCTCCCCCAGCCACCGCCTCAAGCTCCAAGGCACCACCTTCCTGGACCACAGCGTCGACATGGACGACCTCACCGCATCAATCCGCGCCACCCAAAACGAGCACGACCTCAACTCCCTCCTCTCCCCCTACAAGTCCCGCAACCTCTCCATCCGCTTCATGGTCTCCCTCCTCTCCCGCGAGCCCGACTGGCGCCGCTCCCTCGCCATCCTCGACTGGATCAACGACGTCGCCCTATACTCTCCCTCCGTCTTCGCCTACAACGTCGTCATCCGCAACGTGCTCCGAGCCAAGCAGTGGCAAGTCGCACACGGCCTGTTCGACGAAATGCGCCACAGAGCTTTGGCGCCGGACCGCTACACTTACTCCACTCTCATCACTGCGTTTGGGAAGTCCGGCATGTTCGACGCTGCCCTCTCGTGGCTGCAGAAGATGGAGGAGGATCGTGTGTCCGGGGACCTGGTGCTGTATAGCAACTTGATTGAGCTGTCTAGGAAACTGTGTGATTATAGCAAAGCGATTTCGATATTTTCCAGGCTGAAGAGGTTGGGGATAATGCCGGATTTGGTGGCTTATAACTCGATGATCAATGTGTTTGGTAAGGCCAAGTTGTTTAGGGAGGCCAGGGTTTTGCTGAAGGAGATGAGGGCGGTGGGGGTTTTGCCGGATACTGTTAGCTATTCGACGCTTTTGACGATGTACATTGAGAATGAGAAGTTTGTGGAGGCGTTGGCTGTGTTTTCGGAGATGAATGAGGTCAAGTGTCCGCTTGATCTCACAACGTGTAATATTATGATTGATGTTTATGGGCAGCTGGATATGGCGAAGGAGGCTGATAGGTTATTTTGGAGCATGAGGAAGATGGGGCTTGAGCCGAATGTTGTTAGTTACAATACTCTTTTGAGGGTTTATGGTGATGCTGAGCTTTTCGGGGAAGCCATTCATCTTTTTCGAATGATGCAGAGAATGGATGTGGAGCAGAATGTTGTCACGTACAATACGATGATTAGGATTTATGGGAAGTCACTTGAGCATGAAAAGGCTACAAATCTTGTGCAGGAAATGCAGAAGAGAGGGATTCAACCGAATGCCATTACATACTCGACGATAATATCCATATGGGGTAGGGCTGGGAAATTGGACAGGGCAGCAATGCTGTTTCAAAAGCTGAGGAGCTCCGGGGTTGAGATTGATCAGGTTCTTTATCAGACAATGATTGTATCGTATGAGAGAGTAGGTTTGGTTGCTCATGCTAAGCGTTTGCTTCATGAGCTCAAGCGCCCAGACAATATCCCGAGGGAGACTGCAATTACCATTCTTGCTGGAGCCGGTCGTGTAGAAGAGGCGACATGGGTTTTCCGTCAGGCTTTTGAGGCTGGGGAGGTGAAGGATATAGCTGTGTTTGGTTGTATGATTGAGCTTTTCTCAAGAAACCGGAAGTATGCAAATTGCATTGAAGTGTTTGAAAATATGCGAGTGGCAGGATACTTTCCTGCTTCCCATGTGATTGGTCTAGTTCTCAACGCTTATGGAAAGTTACGGGAGTTTGAGAAGGCTGATGCTGTATATAGGGAGATGCAGGAAGAAGGGTGTGTTTTCTCCGATGAAATTCACTTCCAAATGCTCAGTCTTTATGGCGCAAGAAAGGACTTTAAGACGGTAGAGGCAATGTTTGAGAGGCTGGTCTCCGATCCCAACATCAACAAAAAGGAGTTGCATCTTGTTGTTGCAGGCATCTATGAAAGATCTAACAGACTTAATGATTCATACCGGATCATGAACAGGATGAATGAAAGTCGAGCTTTGAAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0031967 GO:0031975 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

680

Amino Acids

77.83

Weight (kDa)

9.08

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	158 - 207	2.8e-13	PPR repeat family
PPR	PF01535	196 - 225	1.1e-06	PPR repeat
PPR_3	PF13812	218 - 277	5e-08	Pentatricopeptide repeat domain
PPR_long	PF17177	248 - 331	5.6e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	260 - 292	5.3e-06	PPR repeat
PPR_2	PF13041	263 - 309	4.5e-11	PPR repeat family
PPR	PF01535	266 - 295	2.7e-06	PPR repeat
PPR_3	PF13812	287 - 347	5.3e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	298 - 344	4e-10	PPR repeat family
PPR_3	PF13812	333 - 382	2.9e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	334 - 380	2.4e-10	PPR repeat family
PPR_long	PF17177	356 - 517	8.4e-12	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	368 - 413	2.3e-11	PPR repeat family
PPR_3	PF13812	392 - 451	6e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	404 - 448	6.3e-15	PPR repeat family
PPR	PF01535	406 - 436	5.1e-07	PPR repeat
PPR_1	PF12854	434 - 465	3e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0013505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39980
fragaria_vesca	FvH4_6g49520
malus_domestica	MD09G1044200.v1.1
prunus_persica	Prupe.3G273600_v2.0.a1
pyrus_communis	pycom111g03450
rosa_chinensis	RchiOBHm_Chr2g0169431
rosa_laevigata	RLG00000021863
rosa_multiflora	Rmu_co8342305.1_g000001 Rmu_sc0004665.1_g000014 Rmu_sc0004665.1_g000015 Rmu_sc0006806.1_g000040
rosa_roxburghii	Rroxscaffold_2G00082130 Rroxscaffold_3G00240790
rosa_samantha	Rh2AG611300 Rh2BG624900 Rh2CG593300 Rh2DG635500
rosa_wichuraiana	Rw2G050730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	804
AasI	GACNNNNNNGTC	1 cut(s)	281
AatII	GACGTC	1 cut(s)	459
AccB1I	GGYRCC	3 cut(s)	260, 420, 574
AccB7I	CCANNNNNTGG	1 cut(s)	525
AccBSI	CCGCTC	2 cut(s)	153, 426
AccI	GTMKAC	1 cut(s)	285
AccII	CGCG	2 cut(s)	315, 408
AclWI	GGATC	4 cut(s)	455, 678, 1913, 2009
AcsI	RAATTY	1 cut(s)	1836
AcuI	CTGAAG	2 cut(s)	788, 884
AcyI	GRCGYC	4 cut(s)	218, 421, 456, 575
AdeI	CACNNNGTG	1 cut(s)	1011
AfaI	GTAC	3 cut(s)	7, 929, 1223
AfiI	CCNNNNNNNGG	3 cut(s)	388, 525, 648
AflIII	ACRYGT	1 cut(s)	1010
AgsI	TTSAA	6 cut(s)	30, 1310, 1391, 1685, 1694, 2035
AjnI	CCWGG	4 cut(s)	270, 687, 761, 851
Alw21I	GWGCWC	4 cut(s)	333, 513, 1406, 1503
Alw26I	GTCTC	3 cut(s)	397, 1523, 1918
AlwI	GGATC	4 cut(s)	455, 678, 1913, 2009
Ama87I	CYCGRG	1 cut(s)	1522
AoxI	GGCC	3 cut(s)	541, 831, 849
ApeKI	GCWGC	4 cut(s)	638, 652, 1039, 1376
ApoI	RAATTY	1 cut(s)	1836
ArsI	GACNNNNNNTTYG	2 cut(s)	1840, 1872
Asp700I	GAANNNNTTC	1 cut(s)	1167
AspLEI	GCGC	6 cut(s)	317, 423, 561, 577, 1509, 1868
AspS9I	GGNCC	3 cut(s)	274, 580, 685
AsuC2I	CCSGG	2 cut(s)	682, 1408
AsuHPI	GGTGA	5 cut(s)	115, 121, 292, 1154, 1624
AsuII	TTCGAA	1 cut(s)	1180
AvaI	CYCGRG	1 cut(s)	1522
AvaII	GGWCC	3 cut(s)	274, 580, 685
BanI	GGYRCC	3 cut(s)	260, 420, 574
BanII	GRGCYC	3 cut(s)	414, 1406, 1503
BauI	CACGAG	1 cut(s)	646
BbsI	GAAGAC	1 cut(s)	472
Bbv12I	GWGCWC	4 cut(s)	333, 513, 1406, 1503
BbvCI	CCTCAGC	1 cut(s)	1397
BbvI	GCAGC	4 cut(s)	625, 639, 1051, 1388
BccI	CCATC	4 cut(s)	386, 443, 655, 1084
BceAI	ACGGC	2 cut(s)	205, 556
BciT130I	CCWGG	4 cut(s)	272, 689, 763, 853
BciVI	GTATCC	2 cut(s)	889, 1706
BclI	TGATCA	2 cut(s)	813, 1420
BcnI	CCSGG	2 cut(s)	682, 1408
BcoDI	GTCTC	3 cut(s)	397, 1523, 1918
BfaI	CTAG	2 cut(s)	720, 1742
BfmI	CTRYAG	1 cut(s)	653
BfoI	RGCGCY	3 cut(s)	424, 578, 1510
BfuI	GTATCC	2 cut(s)	889, 1706
BglI	GCCNNNNNGGC	1 cut(s)	418
BglII	AGATCT	1 cut(s)	1973
BisI	GCNGC	5 cut(s)	424, 639, 653, 1040, 1377
BlpI	GCTNAGC	2 cut(s)	1149, 1482
BlsI	GCNGC	5 cut(s)	425, 640, 654, 1041, 1378
Bme1390I	CCNGG	6 cut(s)	272, 682, 689, 763, 853, 1408
Bme18I	GGWCC	3 cut(s)	274, 580, 685
BmeT110I	CYCGRG	1 cut(s)	1522
BmgT120I	GGNCC	3 cut(s)	274, 580, 685
BmiI	GGNNCC	5 cut(s)	262, 422, 576, 686, 1555
BmrFI	CCNGG	6 cut(s)	272, 682, 689, 763, 853, 1408
BmsI	GCATC	7 cut(s)	314, 1135, 1176, 1777, 1794, 1954, 1971
BpiI	GAAGAC	1 cut(s)	472
BplI	GAGNNNNNCTC	2 cut(s)	1637, 1669
BpmI	CTGGAG	2 cut(s)	208, 1572
Bpu10I	CCTNAGC	1 cut(s)	1397
Bpu1102I	GCTNAGC	2 cut(s)	1149, 1482
Bpu14I	TTCGAA	1 cut(s)	1180
BpuEI	CTTGAG	5 cut(s)	233, 1118, 1277, 1487, 1639
BpuMI	CCSGG	2 cut(s)	682, 1408
BsaAI	YACGTR	1 cut(s)	1221
BsaHI	GRCGYC	4 cut(s)	218, 421, 456, 575
BsaI	GGTCTC	2 cut(s)	397, 1918
BsaJI	CCNNGG	5 cut(s)	256, 681, 852, 1407, 1523
BsaWI	WCCGGW	2 cut(s)	1662, 1998
BsaXI	ACNNNNNCTCC	8 cut(s)	132, 162, 326, 356, 458, 488, 578, 608
Bsc4I	CCNNNNNNNGG	3 cut(s)	388, 525, 648
Bse118I	RCCGGY	1 cut(s)	1556
Bse1I	ACTGG	2 cut(s)	422, 449
Bse3DI	GCAATG	2 cut(s)	1386, 1902
BseBI	CCWGG	4 cut(s)	272, 689, 763, 853
BseDI	CCNNGG	5 cut(s)	256, 681, 852, 1407, 1523
BseGI	GGATG	5 cut(s)	378, 435, 498, 1204, 2019
BseLI	CCNNNNNNNGG	3 cut(s)	388, 525, 648
BseMI	GCAATG	2 cut(s)	1386, 1902
BseMII	CTCAG	3 cut(s)	1140, 1388, 1867
BseNI	ACTGG	2 cut(s)	422, 449
BseRI	GAGGAG	5 cut(s)	157, 338, 389, 680, 1414
BseXI	GCAGC	4 cut(s)	625, 639, 1051, 1388
BseYI	CCCAGC	3 cut(s)	236, 1358, 1604
BsgI	GTGCAG	1 cut(s)	1304
Bsh1236I	CGCG	2 cut(s)	315, 408
Bsh1285I	CGRYCG	1 cut(s)	1561
BshFI	GGCC	3 cut(s)	543, 833, 851
BshNI	GGYRCC	3 cut(s)	260, 420, 574
BsiEI	CGRYCG	1 cut(s)	1561
BsiHKAI	GWGCWC	4 cut(s)	333, 513, 1406, 1503
BsiHKCI	CYCGRG	1 cut(s)	1522
BsiSI	CCGG	9 cut(s)	578, 624, 681, 788, 893, 1407, 1557, 1663, 1999
BslFI	GGGAC	3 cut(s)	208, 349, 698
BslI	CCNNNNNNNGG	3 cut(s)	388, 525, 648
BsmAI	GTCTC	3 cut(s)	397, 1523, 1918
BsmFI	GGGAC	3 cut(s)	208, 349, 698
BsmI	GAATGC	1 cut(s)	1321
BsnI	GGCC	3 cut(s)	543, 833, 851
Bso31I	GGTCTC	2 cut(s)	397, 1918
BsoBI	CYCGRG	1 cut(s)	1522
Bsp119I	TTCGAA	1 cut(s)	1180
Bsp1286I	GDGCHC	5 cut(s)	333, 414, 513, 1406, 1503
Bsp1407I	TGTACA	2 cut(s)	5, 927
Bsp143I	GATC	8 cut(s)	447, 670, 813, 1000, 1420, 1918, 1973, 2001
Bsp1720I	GCTNAGC	2 cut(s)	1149, 1482
BspANI	GGCC	3 cut(s)	543, 833, 851
BspCNI	CTCAG	3 cut(s)	1141, 1389, 1866
BspFNI	CGCG	2 cut(s)	315, 408
BspHI	TCATGA	3 cut(s)	1495, 2004, 2039
BspLI	GGNNCC	5 cut(s)	262, 422, 576, 686, 1555
BspMAI	CTGCAG	1 cut(s)	657
BspPI	GGATC	4 cut(s)	455, 678, 1913, 2009
BspT104I	TTCGAA	1 cut(s)	1180
BspT107I	GGYRCC	3 cut(s)	260, 420, 574
BspTNI	GGTCTC	2 cut(s)	397, 1918
BsrBI	CCGCTC	2 cut(s)	153, 426
BsrDI	GCAATG	2 cut(s)	1386, 1902
BsrFI	RCCGGY	1 cut(s)	1556
BsrGI	TGTACA	2 cut(s)	5, 927
BsrI	ACTGG	2 cut(s)	422, 449
BssAI	RCCGGY	1 cut(s)	1556
BssECI	CCNNGG	5 cut(s)	256, 681, 852, 1407, 1523
BssMI	GATC	8 cut(s)	447, 670, 813, 1000, 1420, 1918, 1973, 2001
BssNI	GRCGYC	4 cut(s)	218, 421, 456, 575
BssSI	CACGAG	1 cut(s)	646
BssT1I	CCWWGG	1 cut(s)	256
Bst2BI	CACGAG	1 cut(s)	646
Bst2UI	CCWGG	4 cut(s)	272, 689, 763, 853
Bst4CI	ACNGT	3 cut(s)	729, 901, 1888
Bst6I	CTCTTC	4 cut(s)	64, 764, 1292, 1563
BstACI	GRCGYC	4 cut(s)	218, 421, 456, 575
BstAPI	GCANNNNNTGC	1 cut(s)	1291
BstAUI	TGTACA	2 cut(s)	5, 927
BstBAI	YACGTR	1 cut(s)	1221
BstBI	TTCGAA	1 cut(s)	1180
BstC8I	GCNNGC	2 cut(s)	410, 1960
BstDEI	CTNAG	4 cut(s)	1149, 1397, 1482, 1853
BstF5I	GGATG	5 cut(s)	378, 435, 498, 1204, 2019
BstFNI	CGCG	2 cut(s)	315, 408
BstH2I	RGCGCY	3 cut(s)	424, 578, 1510
BstHHI	GCGC	6 cut(s)	317, 423, 561, 577, 1509, 1868
BstKTI	GATC	8 cut(s)	450, 673, 816, 1003, 1423, 1921, 1976, 2004
BstMAI	GTCTC	3 cut(s)	397, 1523, 1918
BstMBI	GATC	8 cut(s)	447, 670, 813, 1000, 1420, 1918, 1973, 2001
BstMCI	CGRYCG	1 cut(s)	1561
BstMWI	GCNNNNNNNGC	5 cut(s)	418, 1058, 1291, 1498, 1601
BstNI	CCWGG	4 cut(s)	272, 689, 763, 853
BstNSI	RCATGY	1 cut(s)	631
BstSCI	CCNGG	6 cut(s)	270, 680, 687, 761, 851, 1406
BstSFI	CTRYAG	1 cut(s)	653
BstUI	CGCG	2 cut(s)	315, 408
BstV1I	GCAGC	4 cut(s)	625, 639, 1051, 1388
BstV2I	GAAGAC	1 cut(s)	472
BstX2I	RGATCY	1 cut(s)	1973
BstXI	CCANNNNNNTGG	2 cut(s)	271, 1736
BstYI	RGATCY	1 cut(s)	1973
BsuI	GTATCC	2 cut(s)	889, 1706
BsuRI	GGCC	3 cut(s)	543, 833, 851
BtsCI	GGATG	5 cut(s)	378, 435, 498, 1204, 2019
BtsI	GCAGTG	2 cut(s)	530, 606
BtsIMutI	CAGTG	2 cut(s)	530, 606
Cac8I	GCNNGC	2 cut(s)	410, 1960
CciI	TCATGA	3 cut(s)	1495, 2004, 2039
CfoI	GCGC	6 cut(s)	317, 423, 561, 577, 1509, 1868
Cfr10I	RCCGGY	1 cut(s)	1556
Cfr13I	GGNCC	3 cut(s)	274, 580, 685
CpoI	CGGWCCG	1 cut(s)	580
CseI	GACGC	4 cut(s)	226, 271, 644, 922
CsiI	ACCWGGT	1 cut(s)	687
Csp6I	GTAC	3 cut(s)	6, 928, 1222
CspI	CGGWCCG	1 cut(s)	580
CviQI	GTAC	3 cut(s)	6, 928, 1222
DdeI	CTNAG	4 cut(s)	1149, 1397, 1482, 1853
DinI	GGCGCC	2 cut(s)	422, 576
DpnI	GATC	8 cut(s)	449, 672, 815, 1002, 1422, 1920, 1975, 2003
DpnII	GATC	8 cut(s)	447, 670, 813, 1000, 1420, 1918, 1973, 2001
DraIII	CACNNNGTG	1 cut(s)	1011
DrdI	GACNNNNNNGTC	1 cut(s)	281
DseDI	GACNNNNNNGTC	1 cut(s)	281
Eam1104I	CTCTTC	4 cut(s)	64, 764, 1292, 1563
EarI	CTCTTC	4 cut(s)	64, 764, 1292, 1563
Ecl136II	GAGCTC	2 cut(s)	1404, 1501
Eco130I	CCWWGG	1 cut(s)	256
Eco24I	GRGCYC	3 cut(s)	414, 1406, 1503
Eco31I	GGTCTC	2 cut(s)	397, 1918
Eco47I	GGWCC	3 cut(s)	274, 580, 685
Eco53kI	GAGCTC	2 cut(s)	1404, 1501
Eco57I	CTGAAG	2 cut(s)	788, 884
Eco88I	CYCGRG	1 cut(s)	1522
EcoICRI	GAGCTC	2 cut(s)	1404, 1501
EcoO109I	RGGNCCY	1 cut(s)	685
EcoRII	CCWGG	4 cut(s)	270, 687, 761, 851
EcoT14I	CCWWGG	1 cut(s)	256
EcoT38I	GRGCYC	3 cut(s)	414, 1406, 1503
EgeI	GGCGCC	2 cut(s)	422, 576
EheI	GGCGCC	2 cut(s)	422, 576
ErhI	CCWWGG	1 cut(s)	256
FalI	AAGNNNNNCTT	1 cut(s)	2014
FaqI	GGGAC	3 cut(s)	208, 349, 698
FauI	CCCGC	2 cut(s)	374, 413
FauNDI	CATATG	1 cut(s)	1346
FbaI	TGATCA	2 cut(s)	813, 1420
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	5 cut(s)	424, 639, 653, 1040, 1377
FokI	GGATG	5 cut(s)	365, 422, 485, 1211, 2026
FriOI	GRGCYC	3 cut(s)	414, 1406, 1503
Fsp4HI	GCNGC	5 cut(s)	424, 639, 653, 1040, 1377
FspBI	CTAG	2 cut(s)	720, 1742
GlaI	GCGC	6 cut(s)	316, 422, 560, 576, 1508, 1867
GluI	GCNGC	5 cut(s)	424, 639, 653, 1040, 1377
GsaI	CCCAGC	3 cut(s)	240, 1362, 1608
GsuI	CTGGAG	2 cut(s)	208, 1572
HaeII	RGCGCY	3 cut(s)	424, 578, 1510
HaeIII	GGCC	3 cut(s)	543, 833, 851
HapII	CCGG	9 cut(s)	578, 624, 681, 788, 893, 1407, 1557, 1663, 1999
HgaI	GACGC	4 cut(s)	226, 271, 644, 922
HhaI	GCGC	6 cut(s)	317, 423, 561, 577, 1509, 1868
Hin1I	GRCGYC	4 cut(s)	218, 421, 456, 575
Hin6I	GCGC	6 cut(s)	315, 421, 559, 575, 1507, 1866
HinP1I	GCGC	6 cut(s)	315, 421, 559, 575, 1507, 1866
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	3 cut(s)	147, 1306, 1991
HpaII	CCGG	9 cut(s)	578, 624, 681, 788, 893, 1407, 1557, 1663, 1999
HphI	GGTGA	5 cut(s)	115, 121, 292, 1154, 1624
Hpy166II	GTNNAC	2 cut(s)	6, 286
Hpy188I	TCNGA	5 cut(s)	515, 973, 1437, 1831, 1918
Hpy188III	TCNNGA	6 cut(s)	187, 1496, 1522, 1656, 2005, 2040
Hpy8I	GTNNAC	2 cut(s)	6, 286
Hpy99I	CGWCG	9 cut(s)	220, 287, 458, 461, 497, 554, 638, 916, 1336
HpyAV	CCTTC	9 cut(s)	76, 130, 136, 277, 859, 1048, 1609, 1774, 1808
HpyCH4III	ACNGT	3 cut(s)	729, 901, 1888
HpyCH4IV	ACGT	5 cut(s)	456, 492, 507, 1010, 1220
HpyF10VI	GCNNNNNNNGC	5 cut(s)	418, 1058, 1291, 1498, 1601
HpyF3I	CTNAG	4 cut(s)	1149, 1397, 1482, 1853
HpySE526I	ACGT	5 cut(s)	456, 492, 507, 1010, 1220
Hsp92I	GRCGYC	4 cut(s)	218, 421, 456, 575
HspAI	GCGC	6 cut(s)	315, 421, 559, 575, 1507, 1866
KasI	GGCGCC	2 cut(s)	420, 574
Ksp22I	TGATCA	2 cut(s)	813, 1420
Kzo9I	GATC	8 cut(s)	447, 670, 813, 1000, 1420, 1918, 1973, 2001
LmnI	GCTCC	9 cut(s)	158, 258, 431, 516, 1077, 1204, 1401, 1409, 1553
Lsp1109I	GCAGC	4 cut(s)	625, 639, 1051, 1388
LweI	GCATC	7 cut(s)	314, 1135, 1176, 1777, 1794, 1954, 1971
MabI	ACCWGGT	1 cut(s)	687
MaeI	CTAG	2 cut(s)	720, 1742
MaeII	ACGT	5 cut(s)	456, 492, 507, 1010, 1220
MaeIII	GTNAC	4 cut(s)	1115, 1216, 1251, 1764
MalI	GATC	8 cut(s)	449, 672, 815, 1002, 1422, 1920, 1975, 2003
MbiI	CCGCTC	2 cut(s)	153, 426
MboI	GATC	8 cut(s)	447, 670, 813, 1000, 1420, 1918, 1973, 2001
MflI	RGATCY	1 cut(s)	1973
MhlI	GDGCHC	5 cut(s)	333, 414, 513, 1406, 1503
MluCI	AATT	5 cut(s)	103, 1364, 1536, 1675, 1836
Mly113I	GGCGCC	2 cut(s)	421, 575
MlyI	GAGTC	1 cut(s)	141
MroXI	GAANNNNTTC	1 cut(s)	1167
MseI	TTAA	2 cut(s)	1881, 1986
MslI	CAYNNNNRTG	1 cut(s)	1685
MspA1I	CMGCKG	1 cut(s)	1042
MspI	CCGG	9 cut(s)	578, 624, 681, 788, 893, 1407, 1557, 1663, 1999
MspR9I	CCNGG	6 cut(s)	272, 682, 689, 763, 853, 1408
Mva1269I	GAATGC	1 cut(s)	1321
MvaI	CCWGG	4 cut(s)	272, 689, 763, 853
MvnI	CGCG	2 cut(s)	315, 408
MwoI	GCNNNNNNNGC	5 cut(s)	418, 1058, 1291, 1498, 1601
NarI	GGCGCC	2 cut(s)	421, 575
NciI	CCSGG	2 cut(s)	682, 1408
NdeI	CATATG	1 cut(s)	1346
NdeII	GATC	8 cut(s)	447, 670, 813, 1000, 1420, 1918, 1973, 2001
NlaIV	GGNNCC	5 cut(s)	262, 422, 576, 686, 1555
NmuCI	GTSAC	2 cut(s)	1216, 1251
NspI	RCATGY	1 cut(s)	631
NspV	TTCGAA	1 cut(s)	1180
PagI	TCATGA	3 cut(s)	1495, 2004, 2039
PcsI	WCGNNNNNNNCGW	6 cut(s)	291, 438, 489, 546, 920, 1226
PctI	GAATGC	1 cut(s)	1321
PdmI	GAANNNNTTC	1 cut(s)	1167
PfeI	GAWTC	2 cut(s)	1306, 1991
PflFI	GACNNNGTC	1 cut(s)	220
PflMI	CCANNNNNTGG	1 cut(s)	525
PfoI	TCCNGGA	1 cut(s)	270
PkrI	GCNGC	5 cut(s)	425, 640, 654, 1041, 1378
PleI	GAGTC	1 cut(s)	141
PluTI	GGCGCC	2 cut(s)	424, 578
PpsI	GAGTC	1 cut(s)	141
Ppu21I	YACGTR	1 cut(s)	1221
PpuMI	RGGWCCY	1 cut(s)	685
PsiI	TTATAA	1 cut(s)	804
Psp124BI	GAGCTC	2 cut(s)	1406, 1503
Psp5II	RGGWCCY	1 cut(s)	685
Psp6I	CCWGG	4 cut(s)	270, 687, 761, 851
PspFI	CCCAGC	3 cut(s)	236, 1358, 1604
PspGI	CCWGG	4 cut(s)	270, 687, 761, 851
PspN4I	GGNNCC	5 cut(s)	262, 422, 576, 686, 1555
PspPI	GGNCC	3 cut(s)	274, 580, 685
PspPPI	RGGWCCY	1 cut(s)	685
PstI	CTGCAG	1 cut(s)	657
PsuI	RGATCY	1 cut(s)	1973
PsyI	GACNNNGTC	1 cut(s)	220
PvuII	CAGCTG	1 cut(s)	1042
RsaI	GTAC	3 cut(s)	7, 929, 1223
RsaNI	GTAC	3 cut(s)	6, 928, 1222
RseI	CAYNNNNRTG	1 cut(s)	1685
Rsr2I	CGGWCCG	1 cut(s)	580
RsrII	CGGWCCG	1 cut(s)	580
SacI	GAGCTC	2 cut(s)	1406, 1503
SalI	GTCGAC	1 cut(s)	284
SaqAI	TTAA	2 cut(s)	1881, 1986
SatI	GCNGC	5 cut(s)	424, 639, 653, 1040, 1377
Sau3AI	GATC	8 cut(s)	447, 670, 813, 1000, 1420, 1918, 1973, 2001
Sau96I	GGNCC	3 cut(s)	274, 580, 685
SchI	GAGTC	1 cut(s)	141
ScrFI	CCNGG	6 cut(s)	272, 682, 689, 763, 853, 1408
SduI	GDGCHC	5 cut(s)	333, 414, 513, 1406, 1503
SexAI	ACCWGGT	1 cut(s)	687
SfaNI	GCATC	7 cut(s)	314, 1135, 1176, 1777, 1794, 1954, 1971
SfcI	CTRYAG	1 cut(s)	653
SfoI	GGCGCC	2 cut(s)	422, 576
SfuI	TTCGAA	1 cut(s)	1180
SinI	GGWCC	3 cut(s)	274, 580, 685
SmiMI	CAYNNNNRTG	1 cut(s)	1685
SmlI	CTYRAG	5 cut(s)	248, 1097, 1256, 1502, 1654
SmoI	CTYRAG	5 cut(s)	248, 1097, 1256, 1502, 1654
Sse9I	AATT	5 cut(s)	103, 1364, 1536, 1675, 1836
SspDI	GGCGCC	2 cut(s)	420, 574
SspI	AATATT	1 cut(s)	1018
SspMI	CTAG	2 cut(s)	720, 1742
SstI	GAGCTC	2 cut(s)	1406, 1503
StyD4I	CCNGG	6 cut(s)	270, 680, 687, 761, 851, 1406
StyI	CCWWGG	1 cut(s)	256
TaaI	ACNGT	3 cut(s)	729, 901, 1888
TaiI	ACGT	5 cut(s)	459, 495, 510, 1013, 1223
TasI	AATT	5 cut(s)	103, 1364, 1536, 1675, 1836
TatI	WGTACW	2 cut(s)	5, 927
TauI	GCSGC	1 cut(s)	426
TfiI	GAWTC	2 cut(s)	1306, 1991
Tru1I	TTAA	2 cut(s)	1881, 1986
Tru9I	TTAA	2 cut(s)	1881, 1986
TscAI	CASTG	2 cut(s)	530, 613
TseFI	GTSAC	2 cut(s)	1216, 1251
TseI	GCWGC	4 cut(s)	638, 652, 1039, 1376
Tsp45I	GTSAC	2 cut(s)	1216, 1251
TspGWI	ACGGA	2 cut(s)	466, 1577
TspRI	CASTG	2 cut(s)	530, 613
Tth111I	GACNNNGTC	1 cut(s)	220
Van91I	CCANNNNNTGG	1 cut(s)	525
VpaK11BI	GGWCC	3 cut(s)	274, 580, 685
XapI	RAATTY	1 cut(s)	1836
XceI	RCATGY	1 cut(s)	631
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XmiI	GTMKAC	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	1167
XspI	CTAG	2 cut(s)	720, 1742
ZraI	GACGTC	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.