Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8342305.1

Orthogroup ID

OG0013505

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1012

Gene Structure 1012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8342305.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ccttcaccttcaccacccacaaacccagactccgctccccccttatctcctccgcctccaaagatgtctggagaagaacaccaccccaccccaaaacgacgccgtcccatccctcccaaccctccccccgccaccgccgcaagctccaaggcacctccttcctggaccacagcgtcgacatggacgacctcaccgcctcaatccgcgccacccaaaacgagcacgacctcaactccctcctctctccctacaagtcccgcaacctctccatccgcttcatggtctccctcctctcccgcgagcccgactggcgccgctccctcgccatcctcgactggatcaacgacgtcgccctgtactctccctccgtcttcgcctacaacgtcgtcatccgcaacgtcctccgcgccaagcagtggcaagtcgcccacggcctgttcgacgaaatgcgccacagagctctggcgccggaccgctacacttactccactctcatcaccgcgtttgggaagtccggcatgttcgacgccgcgctctcgtggctgcagaagatggaggaggaccgggtgtccggggacctggtgctgtatagcaacttgattgagctgtctaggaaactgtgtgattatagcaaagcaatttcgatattttccaggctgaagaggttggggataatgccggatttggtggcttataactcgatgatcaatgtgtttggtaaggccaagttgtttagggaggccagggttttgctgaaggagatgagggcggtgggggttttgccggatactgttagctactcgacgcttttgacaatgtacattgagaatgagaagtttgtggaggcgttggctgtgttctcggagatgaatgaggtcaagtgcccgcttgatctcacgacgtgtaatattatgattgatgtttatgggcagctggatatggcgaaggaggctgataggttgttttggagcatgaggaagatggggcttgagccgaatgttgtta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0031967 GO:0031975 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

334

Amino Acids

38.37

Weight (kDa)

9.4

Isoelectric Point (pI)

44.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39980
fragaria_vesca	FvH4_6g49520
malus_domestica	MD09G1044200.v1.1
prunus_persica	Prupe.3G273600_v2.0.a1
pyrus_communis	pycom111g03450
rosa_chinensis	RchiOBHm_Chr2g0169431
rosa_laevigata	RLG00000021863
rosa_multiflora	Rmu_co8342305.1_g000001 Rmu_sc0004665.1_g000014 Rmu_sc0004665.1_g000015 Rmu_sc0006806.1_g000040
rosa_roxburghii	Rroxscaffold_2G00082130 Rroxscaffold_3G00240790
rosa_samantha	Rh2AG611300 Rh2BG624900 Rh2CG593300 Rh2DG635500
rosa_wichuraiana	Rw2G050730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	695
AasI	GACNNNNNNGTC	1 cut(s)	172
AatII	GACGTC	1 cut(s)	350
AccB1I	GGYRCC	3 cut(s)	151, 311, 465
AccB7I	CCANNNNNTGG	1 cut(s)	416
AccBSI	CCGCTC	2 cut(s)	35, 317
AccI	GTMKAC	1 cut(s)	176
AccII	CGCG	5 cut(s)	206, 299, 407, 502, 532
AclWI	GGATC	1 cut(s)	346
AcuI	CTGAAG	2 cut(s)	679, 775
AcyI	GRCGYC	5 cut(s)	100, 312, 347, 466, 527
AdeI	CACNNNGTG	1 cut(s)	902
AfaI	GTAC	2 cut(s)	358, 820
AfiI	CCNNNNNNNGG	3 cut(s)	279, 416, 506
AflIII	ACRYGT	1 cut(s)	901
AhdI	GACNNNNNGTC	1 cut(s)	567
AjiI	CACGTC	1 cut(s)	902
AjnI	CCWGG	4 cut(s)	161, 578, 652, 742
AluBI	AGCT	5 cut(s)	144, 460, 606, 797, 933
AluI	AGCT	5 cut(s)	144, 460, 606, 797, 933
Alw21I	GWGCWC	2 cut(s)	224, 462
Alw26I	GTCTC	1 cut(s)	288
AlwI	GGATC	1 cut(s)	346
AoxI	GGCC	3 cut(s)	432, 722, 740
ApeKI	GCWGC	2 cut(s)	543, 930
AspLEI	GCGC	6 cut(s)	208, 314, 409, 452, 468, 534
AspS9I	GGNCC	4 cut(s)	165, 471, 561, 576
AsuC2I	CCSGG	2 cut(s)	565, 573
AsuHPI	GGTGA	3 cut(s)	3, 183, 489
AvaII	GGWCC	4 cut(s)	165, 471, 561, 576
BaeGI	GKGCMC	1 cut(s)	886
BanI	GGYRCC	3 cut(s)	151, 311, 465
BanII	GRGCYC	2 cut(s)	305, 462
BauI	CACGAG	1 cut(s)	537
BbsI	GAAGAC	1 cut(s)	363
Bbv12I	GWGCWC	2 cut(s)	224, 462
BbvI	GCAGC	2 cut(s)	530, 942
BccI	CCATC	5 cut(s)	116, 277, 334, 546, 975
BceAI	ACGGC	2 cut(s)	87, 447
BciT130I	CCWGG	4 cut(s)	163, 580, 654, 744
BciVI	GTATCC	1 cut(s)	780
BclI	TGATCA	1 cut(s)	704
BcnI	CCSGG	2 cut(s)	565, 573
BcoDI	GTCTC	1 cut(s)	288
BfaI	CTAG	1 cut(s)	611
BfmI	CTRYAG	1 cut(s)	544
BfoI	RGCGCY	2 cut(s)	315, 469
BfuI	GTATCC	1 cut(s)	780
BglI	GCCNNNNNGGC	1 cut(s)	309
BisI	GCNGC	5 cut(s)	138, 315, 530, 544, 931
BlsI	GCNGC	5 cut(s)	139, 316, 531, 545, 932
Bme1390I	CCNGG	6 cut(s)	163, 565, 573, 580, 654, 744
Bme18I	GGWCC	4 cut(s)	165, 471, 561, 576
BmeRI	GACNNNNNGTC	1 cut(s)	567
BmgBI	CACGTC	1 cut(s)	902
BmgT120I	GGNCC	4 cut(s)	165, 471, 561, 576
BmiI	GGNNCC	4 cut(s)	153, 313, 467, 577
BmrFI	CCNGG	6 cut(s)	163, 565, 573, 580, 654, 744
BpiI	GAAGAC	1 cut(s)	363
BpmI	CTGGAG	1 cut(s)	90
BpuMI	CCSGG	2 cut(s)	565, 573
BsaHI	GRCGYC	5 cut(s)	100, 312, 347, 466, 527
BsaI	GGTCTC	1 cut(s)	288
BsaJI	CCNNGG	4 cut(s)	147, 429, 572, 743
BsaXI	ACNNNNNCTCC	8 cut(s)	14, 44, 217, 247, 349, 379, 469, 499
Bsc4I	CCNNNNNNNGG	3 cut(s)	279, 416, 506
Bse1I	ACTGG	2 cut(s)	313, 340
BseBI	CCWGG	4 cut(s)	163, 580, 654, 744
BseDI	CCNNGG	4 cut(s)	147, 429, 572, 743
BseGI	GGATG	4 cut(s)	108, 269, 326, 389
BseLI	CCNNNNNNNGG	3 cut(s)	279, 416, 506
BseNI	ACTGG	2 cut(s)	313, 340
BseRI	GAGGAG	4 cut(s)	39, 229, 280, 571
BseSI	GKGCMC	1 cut(s)	886
BseXI	GCAGC	2 cut(s)	530, 942
Bsh1236I	CGCG	5 cut(s)	206, 299, 407, 502, 532
BshFI	GGCC	3 cut(s)	434, 724, 742
BshNI	GGYRCC	3 cut(s)	151, 311, 465
BsiHKAI	GWGCWC	2 cut(s)	224, 462
BsiSI	CCGG	6 cut(s)	469, 515, 564, 572, 679, 784
BslFI	GGGAC	3 cut(s)	90, 240, 589
BslI	CCNNNNNNNGG	3 cut(s)	279, 416, 506
BsmAI	GTCTC	1 cut(s)	288
BsmFI	GGGAC	3 cut(s)	90, 240, 589
BsnI	GGCC	3 cut(s)	434, 724, 742
Bso31I	GGTCTC	1 cut(s)	288
Bsp1286I	GDGCHC	4 cut(s)	224, 305, 462, 886
Bsp1407I	TGTACA	1 cut(s)	818
Bsp143I	GATC	3 cut(s)	338, 704, 891
BspANI	GGCC	3 cut(s)	434, 724, 742
BspFNI	CGCG	5 cut(s)	206, 299, 407, 502, 532
BspLI	GGNNCC	4 cut(s)	153, 313, 467, 577
BspMAI	CTGCAG	1 cut(s)	548
BspPI	GGATC	1 cut(s)	346
BspT107I	GGYRCC	3 cut(s)	151, 311, 465
BspTNI	GGTCTC	1 cut(s)	288
BsrBI	CCGCTC	2 cut(s)	35, 317
BsrGI	TGTACA	1 cut(s)	818
BsrI	ACTGG	2 cut(s)	313, 340
BssECI	CCNNGG	4 cut(s)	147, 429, 572, 743
BssMI	GATC	3 cut(s)	338, 704, 891
BssNI	GRCGYC	5 cut(s)	100, 312, 347, 466, 527
BssSI	CACGAG	1 cut(s)	537
BssT1I	CCWWGG	1 cut(s)	147
Bst2BI	CACGAG	1 cut(s)	537
Bst2UI	CCWGG	4 cut(s)	163, 580, 654, 744
Bst4CI	ACNGT	2 cut(s)	620, 792
Bst6I	CTCTTC	1 cut(s)	655
BstACI	GRCGYC	5 cut(s)	100, 312, 347, 466, 527
BstAUI	TGTACA	1 cut(s)	818
BstC8I	GCNNGC	3 cut(s)	142, 301, 886
BstDSI	CCRYGG	1 cut(s)	429
BstF5I	GGATG	4 cut(s)	108, 269, 326, 389
BstFNI	CGCG	5 cut(s)	206, 299, 407, 502, 532
BstH2I	RGCGCY	2 cut(s)	315, 469
BstHHI	GCGC	6 cut(s)	208, 314, 409, 452, 468, 534
BstKTI	GATC	3 cut(s)	341, 707, 894
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	3 cut(s)	338, 704, 891
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 309, 540, 949
BstNI	CCWGG	4 cut(s)	163, 580, 654, 744
BstNSI	RCATGY	1 cut(s)	522
BstSCI	CCNGG	6 cut(s)	161, 563, 571, 578, 652, 742
BstSFI	CTRYAG	1 cut(s)	544
BstSLI	GKGCMC	1 cut(s)	886
BstUI	CGCG	5 cut(s)	206, 299, 407, 502, 532
BstV1I	GCAGC	2 cut(s)	530, 942
BstV2I	GAAGAC	1 cut(s)	363
BsuI	GTATCC	1 cut(s)	780
BsuRI	GGCC	3 cut(s)	434, 724, 742
BtgI	CCRYGG	1 cut(s)	429
BtrI	CACGTC	1 cut(s)	902
BtsCI	GGATG	4 cut(s)	108, 269, 326, 389
BtsI	GCAGTG	1 cut(s)	421
BtsIMutI	CAGTG	1 cut(s)	421
Cac8I	GCNNGC	3 cut(s)	142, 301, 886
CfoI	GCGC	6 cut(s)	208, 314, 409, 452, 468, 534
Cfr13I	GGNCC	4 cut(s)	165, 471, 561, 576
CpoI	CGGWCCG	1 cut(s)	471
CseI	GACGC	4 cut(s)	108, 162, 535, 813
CsiI	ACCWGGT	1 cut(s)	578
Csp6I	GTAC	2 cut(s)	357, 819
CspI	CGGWCCG	1 cut(s)	471
CviAII	CATG	4 cut(s)	180, 279, 519, 972
CviQI	GTAC	2 cut(s)	357, 819
DinI	GGCGCC	2 cut(s)	313, 467
DpnI	GATC	3 cut(s)	340, 706, 893
DpnII	GATC	3 cut(s)	338, 704, 891
DraIII	CACNNNGTG	1 cut(s)	902
DrdI	GACNNNNNNGTC	1 cut(s)	172
DriI	GACNNNNNGTC	1 cut(s)	567
DseDI	GACNNNNNNGTC	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	655
Eam1105I	GACNNNNNGTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	655
EciI	GGCGGA	1 cut(s)	42
Ecl136II	GAGCTC	1 cut(s)	460
Eco130I	CCWWGG	1 cut(s)	147
Eco24I	GRGCYC	2 cut(s)	305, 462
Eco31I	GGTCTC	1 cut(s)	288
Eco47I	GGWCC	4 cut(s)	165, 471, 561, 576
Eco53kI	GAGCTC	1 cut(s)	460
Eco57I	CTGAAG	2 cut(s)	679, 775
EcoICRI	GAGCTC	1 cut(s)	460
EcoO109I	RGGNCCY	1 cut(s)	576
EcoRII	CCWGG	4 cut(s)	161, 578, 652, 742
EcoT14I	CCWWGG	1 cut(s)	147
EcoT38I	GRGCYC	2 cut(s)	305, 462
EgeI	GGCGCC	2 cut(s)	313, 467
EheI	GGCGCC	2 cut(s)	313, 467
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	4 cut(s)	183, 282, 522, 975
FaqI	GGGAC	3 cut(s)	90, 240, 589
FatI	CATG	4 cut(s)	179, 278, 518, 971
FauI	CCCGC	4 cut(s)	136, 265, 304, 893
FbaI	TGATCA	1 cut(s)	704
FblI	GTMKAC	1 cut(s)	176
Fnu4HI	GCNGC	5 cut(s)	138, 315, 530, 544, 931
FokI	GGATG	4 cut(s)	95, 256, 313, 376
FriOI	GRGCYC	2 cut(s)	305, 462
Fsp4HI	GCNGC	5 cut(s)	138, 315, 530, 544, 931
FspBI	CTAG	1 cut(s)	611
GlaI	GCGC	6 cut(s)	207, 313, 408, 451, 467, 533
GluI	GCNGC	5 cut(s)	138, 315, 530, 544, 931
GsuI	CTGGAG	1 cut(s)	90
HaeII	RGCGCY	2 cut(s)	315, 469
HaeIII	GGCC	3 cut(s)	434, 724, 742
HapII	CCGG	6 cut(s)	469, 515, 564, 572, 679, 784
HgaI	GACGC	4 cut(s)	108, 162, 535, 813
HhaI	GCGC	6 cut(s)	208, 314, 409, 452, 468, 534
Hin1I	GRCGYC	5 cut(s)	100, 312, 347, 466, 527
Hin1II	CATG	4 cut(s)	183, 282, 522, 975
Hin6I	GCGC	6 cut(s)	206, 312, 407, 450, 466, 532
HinP1I	GCGC	6 cut(s)	206, 312, 407, 450, 466, 532
HincII	GTYRAC	1 cut(s)	177
HindII	GTYRAC	1 cut(s)	177
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	6 cut(s)	469, 515, 564, 572, 679, 784
HphI	GGTGA	3 cut(s)	3, 183, 489
Hpy166II	GTNNAC	1 cut(s)	177
Hpy188I	TCNGA	1 cut(s)	864
Hpy188III	TCNNGA	2 cut(s)	69, 897
Hpy8I	GTNNAC	1 cut(s)	177
Hpy99I	CGWCG	9 cut(s)	102, 178, 349, 352, 388, 445, 529, 807, 903
HpyAV	CCTTC	5 cut(s)	12, 18, 168, 750, 939
HpyCH4III	ACNGT	2 cut(s)	620, 792
HpyCH4IV	ACGT	4 cut(s)	347, 383, 398, 901
HpyCH4V	TGCA	1 cut(s)	546
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 309, 540, 949
HpySE526I	ACGT	4 cut(s)	347, 383, 398, 901
Hsp92I	GRCGYC	5 cut(s)	100, 312, 347, 466, 527
Hsp92II	CATG	4 cut(s)	183, 282, 522, 975
HspAI	GCGC	6 cut(s)	206, 312, 407, 450, 466, 532
KasI	GGCGCC	2 cut(s)	311, 465
Ksp22I	TGATCA	1 cut(s)	704
Kzo9I	GATC	3 cut(s)	338, 704, 891
LmnI	GCTCC	4 cut(s)	40, 149, 322, 968
Lsp1109I	GCAGC	2 cut(s)	530, 942
MabI	ACCWGGT	1 cut(s)	578
MaeI	CTAG	1 cut(s)	611
MaeII	ACGT	4 cut(s)	347, 383, 398, 901
MalI	GATC	3 cut(s)	340, 706, 893
MbiI	CCGCTC	2 cut(s)	35, 317
MboI	GATC	3 cut(s)	338, 704, 891
MboII	GAAGA	5 cut(s)	86, 363, 561, 672, 990
MhlI	GDGCHC	4 cut(s)	224, 305, 462, 886
MluCI	AATT	1 cut(s)	638
Mly113I	GGCGCC	2 cut(s)	312, 466
MlyI	GAGTC	1 cut(s)	23
MspA1I	CMGCKG	1 cut(s)	933
MspI	CCGG	6 cut(s)	469, 515, 564, 572, 679, 784
MspR9I	CCNGG	6 cut(s)	163, 565, 573, 580, 654, 744
MvaI	CCWGG	4 cut(s)	163, 580, 654, 744
MvnI	CGCG	5 cut(s)	206, 299, 407, 502, 532
MwoI	GCNNNNNNNGC	4 cut(s)	137, 309, 540, 949
NarI	GGCGCC	2 cut(s)	312, 466
NciI	CCSGG	2 cut(s)	565, 573
NdeII	GATC	3 cut(s)	338, 704, 891
NlaIII	CATG	4 cut(s)	183, 282, 522, 975
NlaIV	GGNNCC	4 cut(s)	153, 313, 467, 577
NspI	RCATGY	1 cut(s)	522
PcsI	WCGNNNNNNNCGW	4 cut(s)	182, 329, 380, 437
PflFI	GACNNNGTC	1 cut(s)	102
PflMI	CCANNNNNTGG	1 cut(s)	416
PfoI	TCCNGGA	1 cut(s)	161
PkrI	GCNGC	5 cut(s)	139, 316, 531, 545, 932
PleI	GAGTC	1 cut(s)	23
PluTI	GGCGCC	2 cut(s)	315, 469
PpsI	GAGTC	1 cut(s)	23
PpuMI	RGGWCCY	1 cut(s)	576
PsiI	TTATAA	1 cut(s)	695
Psp124BI	GAGCTC	1 cut(s)	462
Psp5II	RGGWCCY	1 cut(s)	576
Psp6I	CCWGG	4 cut(s)	161, 578, 652, 742
PspGI	CCWGG	4 cut(s)	161, 578, 652, 742
PspN4I	GGNNCC	4 cut(s)	153, 313, 467, 577
PspPI	GGNCC	4 cut(s)	165, 471, 561, 576
PspPPI	RGGWCCY	1 cut(s)	576
PstI	CTGCAG	1 cut(s)	548
PsyI	GACNNNGTC	1 cut(s)	102
PvuII	CAGCTG	1 cut(s)	933
RsaI	GTAC	2 cut(s)	358, 820
RsaNI	GTAC	2 cut(s)	357, 819
Rsr2I	CGGWCCG	1 cut(s)	471
RsrII	CGGWCCG	1 cut(s)	471
SacI	GAGCTC	1 cut(s)	462
SalI	GTCGAC	1 cut(s)	175
SatI	GCNGC	5 cut(s)	138, 315, 530, 544, 931
Sau3AI	GATC	3 cut(s)	338, 704, 891
Sau96I	GGNCC	4 cut(s)	165, 471, 561, 576
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	6 cut(s)	163, 565, 573, 580, 654, 744
SduI	GDGCHC	4 cut(s)	224, 305, 462, 886
SexAI	ACCWGGT	1 cut(s)	578
SfcI	CTRYAG	1 cut(s)	544
SfoI	GGCGCC	2 cut(s)	313, 467
SinI	GGWCC	4 cut(s)	165, 471, 561, 576
SmlI	CTYRAG	1 cut(s)	988
SmoI	CTYRAG	1 cut(s)	988
Sse9I	AATT	1 cut(s)	638
SspDI	GGCGCC	2 cut(s)	311, 465
SspI	AATATT	1 cut(s)	909
SspMI	CTAG	1 cut(s)	611
SstI	GAGCTC	1 cut(s)	462
StyD4I	CCNGG	6 cut(s)	161, 563, 571, 578, 652, 742
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	2 cut(s)	620, 792
TaiI	ACGT	4 cut(s)	350, 386, 401, 904
TaqI	TCGA	7 cut(s)	176, 332, 440, 524, 643, 700, 802
TasI	AATT	1 cut(s)	638
TatI	WGTACW	2 cut(s)	356, 818
TauI	GCSGC	3 cut(s)	140, 317, 532
TscAI	CASTG	1 cut(s)	421
TseI	GCWGC	2 cut(s)	543, 930
TspDTI	ATGAA	2 cut(s)	267, 883
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	1 cut(s)	421
Tth111I	GACNNNGTC	1 cut(s)	102
Van91I	CCANNNNNTGG	1 cut(s)	416
VpaK11BI	GGWCC	4 cut(s)	165, 471, 561, 576
XceI	RCATGY	1 cut(s)	522
XcmI	CCANNNNNNNNNTGG	1 cut(s)	276
XmiI	GTMKAC	1 cut(s)	176
XspI	CTAG	1 cut(s)	611
ZraI	GACGTC	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.