RchiOBHm_Chr2g0171661

Tubulin/FtsZ family, C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0013741
Physical Location & Seq
Reverse (-)
85245314 .. 85247668
2355 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 324 bp
ATGTACGCCAAGCGTGCTTTTGTGCATTGGTATGTGGGTGAGGGCATGGAGGAAGGAGAGTTCTCTGAGGCCCGTGAGGATCTCGCTGCTCTGGAGAAGGATTATGAGGAGGTTGATGCCGAAACTATGATAATGAGGGGAAGGAAGAAGGACCAAAGATTTGGTGTTGAGCCAATGATGAAAGAGACTGTGAATTTATACAGGATGGCATTGATCGGACAAGAGTTGAATTTGAAGGCAACCAGGATTGCCTTGGTCTTTTTGAAGGCCACCTTCCTCAGATATTTGCATCTAGTATGCTCAATCGATCTGAGAAGCCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tubulin_C

Protein Analysis

107

Amino Acids

12.53

Weight (kDa)

5.72

Isoelectric Point (pI)

29.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 87
AcsI RAATTY 2 cut(s) 193, 229
AfaI GTAC 1 cut(s) 5
AgsI TTSAA 3 cut(s) 229, 235, 265
AjnI CCWGG 1 cut(s) 242
AloI GAACNNNNNNTCC 2 cut(s) 44, 76
Alw26I GTCTC 1 cut(s) 179
AlwI GGATC 1 cut(s) 87
AoxI GGCC 2 cut(s) 69, 267
ApeKI GCWGC 1 cut(s) 86
ApoI RAATTY 2 cut(s) 193, 229
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
AspS9I GGNCC 2 cut(s) 70, 151
AsuHPI GGTGA 1 cut(s) 50
AvaII GGWCC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 73
BccI CCATC 1 cut(s) 199
BciT130I CCWGG 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 179
BfaI CTAG 1 cut(s) 293
BfmI CTRYAG 1 cut(s) 320
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
Bme1390I CCNGG 1 cut(s) 244
Bme18I GGWCC 1 cut(s) 151
BmgT120I GGNCC 2 cut(s) 70, 151
BmrFI CCNGG 1 cut(s) 244
BmsI GCATC 2 cut(s) 106, 298
BpmI CTGGAG 1 cut(s) 113
Bsa29I ATCGAT 1 cut(s) 306
BsaJI CCNNGG 1 cut(s) 252
BseBI CCWGG 1 cut(s) 244
BseCI ATCGAT 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 210
BseMII CTCAG 3 cut(s) 57, 292, 302
BseRI GAGGAG 1 cut(s) 122
BseXI GCAGC 1 cut(s) 73
BshFI GGCC 2 cut(s) 71, 269
BshVI ATCGAT 1 cut(s) 306
BsmAI GTCTC 1 cut(s) 179
BsnI GGCC 2 cut(s) 71, 269
Bsp143I GATC 3 cut(s) 79, 213, 307
BspANI GGCC 2 cut(s) 71, 269
BspCNI CTCAG 3 cut(s) 58, 291, 303
BspDI ATCGAT 1 cut(s) 306
BspPI GGATC 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 3 cut(s) 79, 213, 307
BssT1I CCWWGG 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 244
Bst4CI ACNGT 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 3 cut(s) 66, 278, 311
BstF5I GGATG 1 cut(s) 210
BstKTI GATC 3 cut(s) 82, 216, 310
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 3 cut(s) 79, 213, 307
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNI CCWGG 1 cut(s) 244
BstSCI CCNGG 1 cut(s) 242
BstSFI CTRYAG 1 cut(s) 320
BstV1I GCAGC 1 cut(s) 73
BstX2I RGATCY 1 cut(s) 79
BstXI CCANNNNNNTGG 1 cut(s) 161
BstYI RGATCY 1 cut(s) 79
Bsu15I ATCGAT 1 cut(s) 306
BsuRI GGCC 2 cut(s) 71, 269
BsuTUI ATCGAT 1 cut(s) 306
BtsCI GGATG 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 15
Cfr13I GGNCC 2 cut(s) 70, 151
ClaI ATCGAT 1 cut(s) 306
Csp6I GTAC 1 cut(s) 4
CviAII CATG 1 cut(s) 46
CviJI RGCY 4 cut(s) 71, 172, 269, 318
CviKI_1 RGCY 4 cut(s) 71, 172, 269, 318
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 3 cut(s) 66, 278, 311
DpnI GATC 3 cut(s) 81, 215, 309
DpnII GATC 3 cut(s) 79, 213, 307
Eco130I CCWWGG 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 242
EcoT14I CCWWGG 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 1 cut(s) 49
FaiI YATR 6 cut(s) 33, 47, 105, 128, 199, 298
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FatI CATG 1 cut(s) 45
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 1 cut(s) 217
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 1 cut(s) 293
GluI GCNGC 1 cut(s) 87
GsuI CTGGAG 1 cut(s) 113
HaeIII GGCC 2 cut(s) 71, 269
Hin1II CATG 1 cut(s) 49
HphI GGTGA 1 cut(s) 50
Hpy188I TCNGA 4 cut(s) 67, 218, 281, 312
Hpy188III TCNNGA 1 cut(s) 92
HpyAV CCTTC 7 cut(s) 47, 91, 135, 142, 229, 259, 283
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4V TGCA 2 cut(s) 25, 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 3 cut(s) 66, 278, 311
Hsp92II CATG 1 cut(s) 49
Kzo9I GATC 3 cut(s) 79, 213, 307
LpnPI CCDG 4 cut(s) 77, 187, 229, 256
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 2 cut(s) 106, 298
MaeI CTAG 1 cut(s) 293
MalI GATC 3 cut(s) 81, 215, 309
MboI GATC 3 cut(s) 79, 213, 307
MboII GAAGA 1 cut(s) 157
MflI RGATCY 1 cut(s) 79
MluCI AATT 2 cut(s) 193, 229
MnlI CCTC 8 cut(s) 34, 43, 61, 70, 100, 103, 129, 287
MslI CAYNNNNRTG 1 cut(s) 30
MspR9I CCNGG 1 cut(s) 244
MvaI CCWGG 1 cut(s) 244
MwoI GCNNNNNNNGC 1 cut(s) 14
NdeII GATC 3 cut(s) 79, 213, 307
NlaIII CATG 1 cut(s) 49
PkrI GCNGC 1 cut(s) 88
Psp6I CCWGG 1 cut(s) 242
PspGI CCWGG 1 cut(s) 242
PspPI GGNCC 2 cut(s) 70, 151
PsuI RGATCY 1 cut(s) 79
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 30
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 3 cut(s) 79, 213, 307
Sau96I GGNCC 2 cut(s) 70, 151
ScrFI CCNGG 1 cut(s) 244
SetI ASST 2 cut(s) 114, 275
SfaNI GCATC 2 cut(s) 106, 298
SfcI CTRYAG 1 cut(s) 320
SinI GGWCC 1 cut(s) 151
SmiMI CAYNNNNRTG 1 cut(s) 30
Sse9I AATT 2 cut(s) 193, 229
SspMI CTAG 1 cut(s) 293
StyD4I CCNGG 1 cut(s) 242
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 1 cut(s) 190
TaqI TCGA 1 cut(s) 306
TasI AATT 2 cut(s) 193, 229
TseI GCWGC 1 cut(s) 86
TspDTI ATGAA 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 151
XapI RAATTY 2 cut(s) 193, 229
XcmI CCANNNNNNNNNTGG 1 cut(s) 250
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.