RchiOBHm_Chr2g0173791

Early nodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0013295
Physical Location & Seq
Forward (+)
86661840 .. 86662503
664 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 510 bp
ATGGCTGCTTTTAAAACAAGTTTGTTCTGGCTCGTCATTTTCATCTCTCTTGGGAACTCGTTGGTTTTCTCAGCTTTTGAGTTCCAGGTTGGTGGAACTCAAGGTTGGATCGTCCCTCCAACCAATGACAGCAAGGTCTACAACGACTGGGCCTCAGAAAACAGGTTCCAAATCGGCAACGCCATCCGTTTTAAGTACAAGAAGGACTCGGTGATGGAGGTGACGGAAGAGGACTACAAGAAGTGCAATTCAAGTCATCCCAACTTCTTCTCCAACAATGGAAACACTGTCTACAGGTTTGACCATTCGGGGTCGTTTTACTTCATCAGTGGGGCAGCCGGACACTGCGAAAAGGGGCAGAGGATGATCGTTAAGGTCATGTCGACCGATGAGGAGTCTCCGTTGGGCAAGAAATCGGCTGGCTATCGTGCTGCGGTTTACGAGCTTGGAGTGTCCAAACTTGTGTTTGTTCAGTTTGTTTTGTTCTATGTTGCTTCTTTAGTGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

169

Amino Acids

19.06

Weight (kDa)

8.48

Isoelectric Point (pI)

17.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 44 - 120 2.4e-19 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013295)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14345
fragaria_vesca FvH4_6g52240
malus_domestica MD09G1019300.v1.1 MD17G1019900.v1.1
prunus_persica Prupe.3G297100_v2.0.a1 Prupe.3G297700_v2.0.a1
pyrus_communis pycom111g01600 pycom17g01650
rosa_chinensis RchiOBHm_Chr2g0173791
rosa_laevigata RLG00000022222
rosa_multiflora Rmu_sc0033569.1_g000002
rosa_roxburghii Rroxscaffold_2G00078620
rosa_rugosa Rorug02G0572800
rosa_samantha Rh2AG651800 Rh2BG662500 Rh2CG627200 Rh2DG677600
rosa_wichuraiana Rw2G053510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 134
AccI GTMKAC 3 cut(s) 138, 291, 383
AciI CCGC 1 cut(s) 434
AclWI GGATC 1 cut(s) 116
AfaI GTAC 1 cut(s) 197
AgsI TTSAA 1 cut(s) 252
AjnI CCWGG 1 cut(s) 84
AjuI GAANNNNNNNTTGG 2 cut(s) 88, 120
AluBI AGCT 2 cut(s) 74, 445
AluI AGCT 2 cut(s) 74, 445
Alw26I GTCTC 1 cut(s) 402
AlwI GGATC 1 cut(s) 116
AoxI GGCC 1 cut(s) 150
ApeKI GCWGC 3 cut(s) 5, 335, 431
AspS9I GGNCC 1 cut(s) 150
AsuHPI GGTGA 2 cut(s) 223, 232
BbvI GCAGC 2 cut(s) 347, 418
BccI CCATC 2 cut(s) 191, 208
BciT130I CCWGG 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 402
BfaI CTAG 1 cut(s) 508
BfmI CTRYAG 1 cut(s) 292
BisI GCNGC 3 cut(s) 6, 336, 432
BlsI GCNGC 3 cut(s) 7, 337, 433
Bme1390I CCNGG 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 150
BmiI GGNNCC 1 cut(s) 167
BmrFI CCNGG 1 cut(s) 86
BmrI ACTGGG 1 cut(s) 157
BmuI ACTGGG 1 cut(s) 157
BpuEI CTTGAG 1 cut(s) 84
BsaXI ACNNNNNCTCC 4 cut(s) 254, 284, 386, 416
Bse1I ACTGG 1 cut(s) 152
BseBI CCWGG 1 cut(s) 86
BseGI GGATG 3 cut(s) 183, 256, 369
BseMII CTCAG 2 cut(s) 84, 168
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 1 cut(s) 407
BseXI GCAGC 2 cut(s) 347, 418
Bsh1285I CGRYCG 1 cut(s) 387
BshFI GGCC 1 cut(s) 152
BsiEI CGRYCG 1 cut(s) 387
BsiSI CCGG 1 cut(s) 339
BslFI GGGAC 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 402
BsmFI GGGAC 1 cut(s) 98
BsnI GGCC 1 cut(s) 152
Bsp143I GATC 2 cut(s) 108, 366
BspACI CCGC 1 cut(s) 434
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 2 cut(s) 83, 167
BspLI GGNNCC 1 cut(s) 167
BspPI GGATC 1 cut(s) 116
BsrI ACTGG 1 cut(s) 152
BssMI GATC 2 cut(s) 108, 366
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 1 cut(s) 289
Bst6I CTCTTC 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 421
BstDEI CTNAG 2 cut(s) 70, 154
BstF5I GGATG 3 cut(s) 183, 256, 369
BstKTI GATC 2 cut(s) 111, 369
BstMAI GTCTC 1 cut(s) 402
BstMBI GATC 2 cut(s) 108, 366
BstMCI CGRYCG 1 cut(s) 387
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 84
BstSFI CTRYAG 1 cut(s) 292
BstV1I GCAGC 2 cut(s) 347, 418
BstXI CCANNNNNNTGG 1 cut(s) 92
BsuRI GGCC 1 cut(s) 152
BtsCI GGATG 3 cut(s) 183, 256, 369
BtsI GCAGTG 1 cut(s) 343
BtsIMutI CAGTG 3 cut(s) 285, 334, 343
Cac8I GCNNGC 1 cut(s) 421
Cfr13I GGNCC 1 cut(s) 150
Csp6I GTAC 1 cut(s) 196
CviAII CATG 1 cut(s) 379
CviJI RGCY 8 cut(s) 5, 31, 74, 152, 338, 419, 423, 445
CviKI_1 RGCY 8 cut(s) 5, 31, 74, 152, 338, 419, 423, 445
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 2 cut(s) 70, 154
DpnI GATC 2 cut(s) 110, 368
DpnII GATC 2 cut(s) 108, 366
DraI TTTAAA 1 cut(s) 13
DrdI GACNNNNNNGTC 1 cut(s) 134
DseDI GACNNNNNNGTC 1 cut(s) 134
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 84
FaeI CATG 1 cut(s) 382
FaiI YATR 2 cut(s) 380, 489
FaqI GGGAC 1 cut(s) 98
FatI CATG 1 cut(s) 378
FblI GTMKAC 3 cut(s) 138, 291, 383
Fnu4HI GCNGC 3 cut(s) 6, 336, 432
FokI GGATG 3 cut(s) 170, 243, 376
Fsp4HI GCNGC 3 cut(s) 6, 336, 432
FspBI CTAG 1 cut(s) 508
GluI GCNGC 3 cut(s) 6, 336, 432
HaeIII GGCC 1 cut(s) 152
HapII CCGG 1 cut(s) 339
Hin1II CATG 1 cut(s) 382
HincII GTYRAC 1 cut(s) 384
HindII GTYRAC 1 cut(s) 384
HinfI GANTC 2 cut(s) 206, 395
HpaII CCGG 1 cut(s) 339
HphI GGTGA 2 cut(s) 223, 232
Hpy166II GTNNAC 4 cut(s) 139, 292, 384, 439
Hpy188I TCNGA 1 cut(s) 157
Hpy8I GTNNAC 4 cut(s) 139, 292, 384, 439
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4V TGCA 1 cut(s) 246
HpyF3I CTNAG 2 cut(s) 70, 154
Hsp92II CATG 1 cut(s) 382
Kzo9I GATC 2 cut(s) 108, 366
LpnPI CCDG 8 cut(s) 13, 71, 98, 133, 148, 280, 352, 405
Lsp1109I GCAGC 2 cut(s) 347, 418
MaeI CTAG 1 cut(s) 508
MaeIII GTNAC 1 cut(s) 220
MalI GATC 2 cut(s) 110, 368
MboI GATC 2 cut(s) 108, 366
MboII GAAGA 2 cut(s) 239, 259
MluCI AATT 1 cut(s) 247
MlyI GAGTC 2 cut(s) 200, 404
MmeI TCCRAC 3 cut(s) 86, 143, 297
MnlI CCTC 6 cut(s) 126, 163, 211, 223, 354, 385
MseI TTAA 3 cut(s) 12, 192, 372
MspI CCGG 1 cut(s) 339
MspR9I CCNGG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 86
NdeII GATC 2 cut(s) 108, 366
NlaIII CATG 1 cut(s) 382
NlaIV GGNNCC 1 cut(s) 167
NmuCI GTSAC 1 cut(s) 220
PkrI GCNGC 3 cut(s) 7, 337, 433
PleI GAGTC 2 cut(s) 200, 403
PpsI GAGTC 2 cut(s) 200, 403
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 167
PspPI GGNCC 1 cut(s) 150
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SalI GTCGAC 1 cut(s) 382
SaqAI TTAA 3 cut(s) 12, 192, 372
SatI GCNGC 3 cut(s) 6, 336, 432
Sau3AI GATC 2 cut(s) 108, 366
Sau96I GGNCC 1 cut(s) 150
SchI GAGTC 2 cut(s) 200, 404
ScrFI CCNGG 1 cut(s) 86
SetI ASST 9 cut(s) 76, 90, 106, 138, 167, 222, 299, 378, 447
SfcI CTRYAG 1 cut(s) 292
SmlI CTYRAG 1 cut(s) 99
SmoI CTYRAG 1 cut(s) 99
Sse9I AATT 1 cut(s) 247
SsiI CCGC 1 cut(s) 434
SspMI CTAG 1 cut(s) 508
StyD4I CCNGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 289
TaqI TCGA 1 cut(s) 383
TaqII GACCGA 1 cut(s) 401
TasI AATT 1 cut(s) 247
TatI WGTACW 1 cut(s) 195
Tru1I TTAA 3 cut(s) 12, 192, 372
Tru9I TTAA 3 cut(s) 12, 192, 372
TscAI CASTG 3 cut(s) 292, 334, 350
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 3 cut(s) 5, 335, 431
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 31, 313
TspGWI ACGGA 3 cut(s) 176, 239, 390
TspRI CASTG 3 cut(s) 292, 334, 350
XmiI GTMKAC 3 cut(s) 138, 291, 383
XspI CTAG 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.