RchiOBHm_Chr2g0174061

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0006519
Physical Location & Seq
Forward (+)
86793953 .. 86796628
2676 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 693 bp
ATGCCCGAGGTACATTGTTCGAGAGAAAGGAGTAAGGCAGCATGGAAAGTAATTGAGGAGTATTTAATGCCCTATGTAGAGAAAGAGCGGTATCAGATTCCGAGAACGTGTAGGCTGCACCCTGATAATGATCTGTACAGAGATCAGGAACAGCACAAAATCCGAATAGATATATATGAATGGCAGTGTGGATACTGTAAGAAGAGATTTTACGAGGAGAAGTTTCTTGACAAGCATTTTGACAACAGGCATCACAATTTGCTGAATGTGAGTCATAGTAGGTGCTTAGCAGATGTCTGTGGTGCGTTGCACTGTGATGTTGCAATGGGTGCTGCCCCACACAAGACCAAGTGCAATCCTGCTGCTGCTGCACGGAATAAACATCTGTGTGAGGGTCTAGCGGATAGTTGTTTTCCAGTCAATCAGGGTCCTTCAGCAAACCGTTTACATGAATTCTTTTTACGCCAATTCTGTGATGCCCTCACTTGCACTGGACGCCAGAAACCATTCTCTCAAGGACGCAAGAAGAGGAGGATGAGTATATCTTACATTGTTATTTCTGTTCTGACTTTGATGCTGCTCCTCCTTTACTATACTTATCTTTACATCTACAGAAGTGGAATTAAAAGGGGAACTCAAGACCTGAAACGAGTCTCACTTACGCAGAGTGGAAGGAAGAAAAAGCCCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

26.99

Weight (kDa)

9.45

Isoelectric Point (pI)

49.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 88
AciI CCGC 2 cut(s) 88, 401
AcsI RAATTY 1 cut(s) 452
AcuI CTGAAG 1 cut(s) 417
AcyI GRCGYC 1 cut(s) 496
AfaI GTAC 2 cut(s) 12, 137
AflIII ACRYGT 1 cut(s) 107
Alw26I GTCTC 1 cut(s) 658
Ama87I CYCGRG 1 cut(s) 5
ApeKI GCWGC 7 cut(s) 38, 115, 332, 362, 365, 368, 577
ApoI RAATTY 1 cut(s) 452
ArsI GACNNNNNNTTYG 2 cut(s) 221, 253
Asp700I GAANNNNTTC 1 cut(s) 506
AspS9I GGNCC 1 cut(s) 428
AvaI CYCGRG 1 cut(s) 5
AvaII GGWCC 1 cut(s) 428
BarI GAAGNNNNNNTAC 2 cut(s) 194, 226
BbvI GCAGC 7 cut(s) 50, 102, 319, 349, 352, 355, 564
BciVI GTATCC 1 cut(s) 185
BcoDI GTCTC 1 cut(s) 658
BfaI CTAG 1 cut(s) 398
BfmI CTRYAG 1 cut(s) 610
BfuI GTATCC 1 cut(s) 185
BisI GCNGC 7 cut(s) 39, 116, 333, 363, 366, 369, 578
BlpI GCTNAGC 1 cut(s) 286
BlsI GCNGC 7 cut(s) 40, 117, 334, 364, 367, 370, 579
Bme18I GGWCC 1 cut(s) 428
BmeT110I CYCGRG 1 cut(s) 5
BmgT120I GGNCC 1 cut(s) 428
BmiI GGNNCC 1 cut(s) 429
BmsI GCATC 3 cut(s) 259, 466, 564
Bpu1102I GCTNAGC 1 cut(s) 286
BpuEI CTTGAG 2 cut(s) 498, 621
BsaBI GATNNNNATC 1 cut(s) 129
BsaHI GRCGYC 1 cut(s) 496
BsaJI CCNNGG 1 cut(s) 6
BsaXI ACNNNNNCTCC 2 cut(s) 523, 553
Bse1I ACTGG 2 cut(s) 416, 496
Bse3DI GCAATG 1 cut(s) 330
Bse8I GATNNNNATC 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 1 cut(s) 540
BseJI GATNNNNATC 1 cut(s) 129
BseMI GCAATG 1 cut(s) 330
BseNI ACTGG 2 cut(s) 416, 496
BseRI GAGGAG 4 cut(s) 71, 230, 544, 572
BseXI GCAGC 7 cut(s) 50, 102, 319, 349, 352, 355, 564
BsgI GTGCAG 2 cut(s) 101, 354
BsiHKCI CYCGRG 1 cut(s) 5
BsmAI GTCTC 1 cut(s) 658
BsoBI CYCGRG 1 cut(s) 5
Bsp1407I TGTACA 1 cut(s) 135
Bsp143I GATC 2 cut(s) 130, 142
Bsp1720I GCTNAGC 1 cut(s) 286
BspACI CCGC 2 cut(s) 88, 401
BspLI GGNNCC 1 cut(s) 429
BsrBI CCGCTC 1 cut(s) 88
BsrDI GCAATG 1 cut(s) 330
BsrGI TGTACA 1 cut(s) 135
BsrI ACTGG 2 cut(s) 416, 496
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 2 cut(s) 130, 142
BssNI GRCGYC 1 cut(s) 496
Bst4CI ACNGT 3 cut(s) 197, 314, 443
Bst6I CTCTTC 2 cut(s) 197, 521
BstACI GRCGYC 1 cut(s) 496
BstAPI GCANNNNNTGC 1 cut(s) 329
BstAUI TGTACA 1 cut(s) 135
BstDEI CTNAG 2 cut(s) 286, 690
BstF5I GGATG 1 cut(s) 540
BstKTI GATC 2 cut(s) 133, 145
BstMAI GTCTC 1 cut(s) 658
BstMBI GATC 2 cut(s) 130, 142
BstMWI GCNNNNNNNGC 3 cut(s) 329, 368, 495
BstSFI CTRYAG 1 cut(s) 610
BstV1I GCAGC 7 cut(s) 50, 102, 319, 349, 352, 355, 564
BsuI GTATCC 1 cut(s) 185
BtsCI GGATG 1 cut(s) 540
BtsI GCAGTG 1 cut(s) 191
BtsIMutI CAGTG 3 cut(s) 191, 310, 489
Cfr13I GGNCC 1 cut(s) 428
CseI GACGC 2 cut(s) 504, 528
Csp6I GTAC 2 cut(s) 11, 136
CviAII CATG 2 cut(s) 42, 449
CviJI RGCY 2 cut(s) 115, 685
CviKI_1 RGCY 2 cut(s) 115, 685
CviQI GTAC 2 cut(s) 11, 136
DdeI CTNAG 2 cut(s) 286, 690
DpnI GATC 2 cut(s) 132, 144
DpnII GATC 2 cut(s) 130, 142
Eam1104I CTCTTC 2 cut(s) 197, 521
EarI CTCTTC 2 cut(s) 197, 521
Eco47I GGWCC 1 cut(s) 428
Eco57I CTGAAG 1 cut(s) 417
Eco88I CYCGRG 1 cut(s) 5
EcoO109I RGGNCCY 1 cut(s) 428
EcoRI GAATTC 1 cut(s) 452
FaeI CATG 2 cut(s) 45, 452
FaiI YATR 9 cut(s) 43, 75, 173, 175, 177, 276, 450, 542, 594
FatI CATG 2 cut(s) 41, 448
Fnu4HI GCNGC 7 cut(s) 39, 116, 333, 363, 366, 369, 578
FokI GGATG 1 cut(s) 547
Fsp4HI GCNGC 7 cut(s) 39, 116, 333, 363, 366, 369, 578
FspBI CTAG 1 cut(s) 398
GluI GCNGC 7 cut(s) 39, 116, 333, 363, 366, 369, 578
HgaI GACGC 2 cut(s) 504, 528
Hin1I GRCGYC 1 cut(s) 496
Hin1II CATG 2 cut(s) 45, 452
HinfI GANTC 3 cut(s) 97, 271, 651
Hpy166II GTNNAC 1 cut(s) 446
Hpy188I TCNGA 4 cut(s) 96, 102, 164, 567
Hpy188III TCNNGA 4 cut(s) 21, 146, 227, 638
Hpy8I GTNNAC 1 cut(s) 446
HpyAV CCTTC 2 cut(s) 441, 666
HpyCH4III ACNGT 3 cut(s) 197, 314, 443
HpyCH4IV ACGT 1 cut(s) 107
HpyCH4V TGCA 6 cut(s) 118, 310, 323, 354, 371, 489
HpyF10VI GCNNNNNNNGC 3 cut(s) 329, 368, 495
HpyF3I CTNAG 2 cut(s) 286, 690
HpySE526I ACGT 1 cut(s) 107
Hsp92I GRCGYC 1 cut(s) 496
Hsp92II CATG 2 cut(s) 45, 452
Kzo9I GATC 2 cut(s) 130, 142
LmnI GCTCC 1 cut(s) 585
LpnPI CCDG 9 cut(s) 131, 135, 232, 372, 410, 429, 477, 512, 656
Lsp1109I GCAGC 7 cut(s) 50, 102, 319, 349, 352, 355, 564
LweI GCATC 3 cut(s) 259, 466, 564
MaeI CTAG 1 cut(s) 398
MaeII ACGT 1 cut(s) 107
MalI GATC 2 cut(s) 132, 144
MbiI CCGCTC 1 cut(s) 88
MboI GATC 2 cut(s) 130, 142
MboII GAAGA 3 cut(s) 214, 538, 688
MluCI AATT 5 cut(s) 51, 256, 452, 467, 621
MlyI GAGTC 2 cut(s) 280, 660
MnlI CCTC 7 cut(s) 49, 208, 385, 491, 522, 525, 593
MroXI GAANNNNTTC 1 cut(s) 506
MseI TTAA 2 cut(s) 65, 624
MslI CAYNNNNRTG 2 cut(s) 315, 387
MwoI GCNNNNNNNGC 3 cut(s) 329, 368, 495
NdeII GATC 2 cut(s) 130, 142
NlaIII CATG 2 cut(s) 45, 452
NlaIV GGNNCC 1 cut(s) 429
PdmI GAANNNNTTC 1 cut(s) 506
PfeI GAWTC 1 cut(s) 97
PkrI GCNGC 7 cut(s) 40, 117, 334, 364, 367, 370, 579
PleI GAGTC 2 cut(s) 279, 659
PpsI GAGTC 2 cut(s) 279, 659
PpuMI RGGWCCY 1 cut(s) 428
Psp5II RGGWCCY 1 cut(s) 428
PspN4I GGNNCC 1 cut(s) 429
PspPI GGNCC 1 cut(s) 428
PspPPI RGGWCCY 1 cut(s) 428
RsaI GTAC 2 cut(s) 12, 137
RsaNI GTAC 2 cut(s) 11, 136
RseI CAYNNNNRTG 2 cut(s) 315, 387
SaqAI TTAA 2 cut(s) 65, 624
SatI GCNGC 7 cut(s) 39, 116, 333, 363, 366, 369, 578
Sau3AI GATC 2 cut(s) 130, 142
Sau96I GGNCC 1 cut(s) 428
SchI GAGTC 2 cut(s) 280, 660
SetI ASST 4 cut(s) 12, 110, 284, 645
SfaNI GCATC 3 cut(s) 259, 466, 564
SfcI CTRYAG 1 cut(s) 610
SinI GGWCC 1 cut(s) 428
SmiMI CAYNNNNRTG 2 cut(s) 315, 387
SmlI CTYRAG 2 cut(s) 513, 636
SmoI CTYRAG 2 cut(s) 513, 636
Sse9I AATT 5 cut(s) 51, 256, 452, 467, 621
SsiI CCGC 2 cut(s) 88, 401
SspMI CTAG 1 cut(s) 398
TaaI ACNGT 3 cut(s) 197, 314, 443
TaiI ACGT 1 cut(s) 110
TaqI TCGA 1 cut(s) 20
TasI AATT 5 cut(s) 51, 256, 452, 467, 621
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 1 cut(s) 97
Tru1I TTAA 2 cut(s) 65, 624
Tru9I TTAA 2 cut(s) 65, 624
TscAI CASTG 3 cut(s) 191, 317, 496
TseI GCWGC 7 cut(s) 38, 115, 332, 362, 365, 368, 577
TspDTI ATGAA 2 cut(s) 192, 465
TspGWI ACGGA 1 cut(s) 388
TspRI CASTG 3 cut(s) 191, 317, 496
VpaK11BI GGWCC 1 cut(s) 428
XapI RAATTY 1 cut(s) 452
XmnI GAANNNNTTC 1 cut(s) 506
XspI CTAG 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.