RchiOBHm_Chr2g0174601

lysine histidine transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0008192
Physical Location & Seq
Forward (+)
87147630 .. 87149743
2114 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1335 bp
ATGGATGAGCAACCGGAGAAGCAAGGAAAGATAGATGAACAACTACGGAGGCAGAAGGAAATTGATGACTGGCTTCCAATTACTTCATCAAGGAATGCAAAATGGTGGTACTCAGCTTTCCACAATGTCACTGCCATGGTTGGAGCTGGTGTCCTCAGTCTTCCCTTTGCCATGTCTAATCTTGGATGGGGTCCTGGTGTAGTTATTCTGATATTATCATGGGTGATTACTTTATTCACATTATGGCAAATGGTTGAGATGCATGAAATGGTTCCGGGAAAGCGGTTTGATAGGTACCATGAACTGGGTCAACATGCCTTTGGTGAAAAGCTTGGTCTTTGGATTGTGGTGCCCCAACAGCTGATCTGCGAAGTTGGCGTGGACATTGTGTACATGGTCACTGGAGGAAAATCGCTGCAGAAGGTCCATAACATAGTTCATAAAGACGAGAAAGACTCAATCAAACTCAGTTACTTTATCATGATATTTGCCTCTGCTCATTTTGTACTTGCTCATCTCCCCAACTTCAACTCCATATCTGGGGTGTCTTTGGCAGCAGCAGTCATGTCATTAAGTTACTCTACTATTGCATGGACGGCTTCAATCCATAAGGGTGTTCAGGCAGATGTAGACTATGGTTATTTAGCCCCCAGCACATCAGGAACAGTCTTTAACTTCTTCAGTGCCTTGGGCGACGTTGCTTTTGCCTATGCAGGCCACAATGTGGTTCTGGAGATTCAAGCAACAATCCCTTCCACACCTGAAACCCCATCGAAGAAGCCTATGTGGAGGGGTGTTGTGATAGCCTACATAGTTGTGGCTTTGTGCTATTTTCCAGTGGCTCTCATTGGATACTACACCTTTGGCAACAAAGTTGAGGACAACATCTTAATATCATTGGAGAAACCTGAATGGCTCATCATAATGGCAAACATGTTTGTTGTTGTCCATGTTATTGGGAGTTATCAGCTATATGCAATGCCAGTGTTTGACATGATAGAAACTGTCCTGGTAAAGAAACTAGAGTTCAGGCCAACTACAACTCTTCGCTTCATTTCACGCAATTTATATGTTGCATTCACAATGTTCGTCGGTATTACTTTTCCCTTCTTTGGTGGACTTCTGGGATTCTTTGGCGGATTTGCCTTTTCCCCAACAACATACTTTCTCCCTTGCATCATGTGGCTTGCCATCAAGAAACCGCGAAAGTTTAGCTTATCTTGGATCGTTAACTGGATTTGCATTACATTGGGAGTCATGCTCATGATCCTATCACCTATTGGAGGCTTAAGGAGTATCATACTTCAAGCCAAGAACTACAAGTTCTACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

444

Amino Acids

50.01

Weight (kDa)

8.66

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 32 - 428 4.6e-110 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 37 - 202 2.8e-09 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 294
AccB1I GGYRCC 2 cut(s) 294, 349
AccB7I CCANNNNNTGG 2 cut(s) 304, 724
AccI GTMKAC 1 cut(s) 630
AccII CGCG 1 cut(s) 1204
AciI CCGC 3 cut(s) 283, 1137, 1202
AclWI GGATC 2 cut(s) 1232, 1261
AcuI CTGAAG 1 cut(s) 664
AdeI CACNNNGTG 1 cut(s) 724
AfaI GTAC 4 cut(s) 110, 296, 392, 507
AfiI CCNNNNNNNGG 5 cut(s) 304, 540, 724, 1112, 1283
AflII CTTAAG 1 cut(s) 1288
AflIII ACRYGT 1 cut(s) 933
AgsI TTSAA 4 cut(s) 529, 603, 740, 1307
AjnI CCWGG 2 cut(s) 193, 1008
AluBI AGCT 6 cut(s) 116, 146, 331, 361, 970, 1215
AluI AGCT 6 cut(s) 116, 146, 331, 361, 970, 1215
AlwI GGATC 2 cut(s) 1232, 1261
AoxI GGCC 2 cut(s) 715, 1031
ApeKI GCWGC 3 cut(s) 415, 554, 557
ArsI GACNNNNNNTTYG 2 cut(s) 686, 718
Asp700I GAANNNNTTC 1 cut(s) 270
Asp718I GGTACC 1 cut(s) 294
AspS9I GGNCC 2 cut(s) 191, 424
AsuC2I CCSGG 1 cut(s) 276
AsuHPI GGTGA 3 cut(s) 235, 335, 1266
AvaII GGWCC 2 cut(s) 191, 424
BaeGI GKGCMC 1 cut(s) 354
BanI GGYRCC 2 cut(s) 294, 349
BbsI GAAGAC 1 cut(s) 152
BbvI GCAGC 3 cut(s) 402, 566, 569
BccI CCATC 3 cut(s) 180, 778, 1199
BceAI ACGGC 1 cut(s) 612
BciT130I CCWGG 2 cut(s) 195, 1010
BciVI GTATCC 1 cut(s) 845
BcnI CCSGG 1 cut(s) 276
BfaI CTAG 1 cut(s) 1022
BfmI CTRYAG 1 cut(s) 416
BfrI CTTAAG 1 cut(s) 1288
BfuI GTATCC 1 cut(s) 845
BisI GCNGC 3 cut(s) 416, 555, 558
BlsI GCNGC 3 cut(s) 417, 556, 559
Bme1390I CCNGG 3 cut(s) 195, 276, 1010
Bme18I GGWCC 2 cut(s) 191, 424
BmgT120I GGNCC 2 cut(s) 191, 424
BmiI GGNNCC 4 cut(s) 192, 273, 296, 351
BmrFI CCNGG 3 cut(s) 195, 276, 1010
BmrI ACTGGG 1 cut(s) 314
BmsI GCATC 2 cut(s) 249, 1185
BmuI ACTGGG 1 cut(s) 314
BpiI GAAGAC 1 cut(s) 152
BplI GAGNNNNNCTC 4 cut(s) 440, 472, 1245, 1277
BpmI CTGGAG 2 cut(s) 423, 752
BpuMI CCSGG 1 cut(s) 276
BsaJI CCNNGG 2 cut(s) 135, 687
BsaWI WCCGGW 1 cut(s) 13
BsaXI ACNNNNNCTCC 4 cut(s) 135, 165, 515, 545
Bsc4I CCNNNNNNNGG 5 cut(s) 304, 540, 724, 1112, 1283
Bse1I ACTGG 6 cut(s) 74, 309, 406, 836, 983, 1238
Bse3DI GCAATG 1 cut(s) 984
BseBI CCWGG 2 cut(s) 195, 1010
BseDI CCNNGG 2 cut(s) 135, 687
BseGI GGATG 2 cut(s) 10, 191
BseLI CCNNNNNNNGG 5 cut(s) 304, 540, 724, 1112, 1283
BseMI GCAATG 1 cut(s) 984
BseMII CTCAG 3 cut(s) 126, 169, 481
BseNI ACTGG 6 cut(s) 74, 309, 406, 836, 983, 1238
BseSI GKGCMC 1 cut(s) 354
BseXI GCAGC 3 cut(s) 402, 566, 569
BseYI CCCAGC 1 cut(s) 650
Bsh1236I CGCG 1 cut(s) 1204
BshFI GGCC 2 cut(s) 717, 1033
BshNI GGYRCC 2 cut(s) 294, 349
BsiSI CCGG 2 cut(s) 14, 275
BslI CCNNNNNNNGG 5 cut(s) 304, 540, 724, 1112, 1283
BsmI GAATGC 2 cut(s) 100, 1076
BsnI GGCC 2 cut(s) 717, 1033
Bsp1286I GDGCHC 1 cut(s) 354
Bsp1407I TGTACA 1 cut(s) 390
Bsp143I GATC 3 cut(s) 363, 1224, 1266
Bsp19I CCATGG 1 cut(s) 135
BspACI CCGC 3 cut(s) 283, 1137, 1202
BspANI GGCC 2 cut(s) 717, 1033
BspCNI CTCAG 3 cut(s) 125, 168, 480
BspFNI CGCG 1 cut(s) 1204
BspHI TCATGA 2 cut(s) 480, 1263
BspLI GGNNCC 4 cut(s) 192, 273, 296, 351
BspMAI CTGCAG 1 cut(s) 420
BspPI GGATC 2 cut(s) 1232, 1261
BspT107I GGYRCC 2 cut(s) 294, 349
BspTI CTTAAG 1 cut(s) 1288
BsrDI GCAATG 1 cut(s) 984
BsrGI TGTACA 1 cut(s) 390
BsrI ACTGG 6 cut(s) 74, 309, 406, 836, 983, 1238
BssECI CCNNGG 2 cut(s) 135, 687
BssMI GATC 3 cut(s) 363, 1224, 1266
BssT1I CCWWGG 2 cut(s) 135, 687
Bst2UI CCWGG 2 cut(s) 195, 1010
Bst4CI ACNGT 2 cut(s) 667, 1006
Bst6I CTCTTC 1 cut(s) 1050
BstAFI CTTAAG 1 cut(s) 1288
BstAUI TGTACA 1 cut(s) 390
BstC8I GCNNGC 2 cut(s) 715, 1188
BstDEI CTNAG 3 cut(s) 112, 155, 467
BstDSI CCRYGG 1 cut(s) 135
BstENI CCTNNNNNAGG 1 cut(s) 1281
BstF5I GGATG 2 cut(s) 10, 191
BstFNI CGCG 1 cut(s) 1204
BstKTI GATC 3 cut(s) 366, 1227, 1269
BstMBI GATC 3 cut(s) 363, 1224, 1266
BstMWI GCNNNNNNNGC 3 cut(s) 358, 375, 596
BstNI CCWGG 2 cut(s) 195, 1010
BstNSI RCATGY 2 cut(s) 317, 937
BstSCI CCNGG 3 cut(s) 193, 274, 1008
BstSFI CTRYAG 1 cut(s) 416
BstSLI GKGCMC 1 cut(s) 354
BstUI CGCG 1 cut(s) 1204
BstV1I GCAGC 3 cut(s) 402, 566, 569
BstV2I GAAGAC 1 cut(s) 152
BstXI CCANNNNNNTGG 1 cut(s) 956
BsuI GTATCC 1 cut(s) 845
BsuRI GGCC 2 cut(s) 717, 1033
BtgI CCRYGG 1 cut(s) 135
BtsCI GGATG 2 cut(s) 10, 191
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 5 cut(s) 129, 399, 688, 843, 990
Cac8I GCNNGC 2 cut(s) 715, 1188
CciI TCATGA 2 cut(s) 480, 1263
Cfr13I GGNCC 2 cut(s) 191, 424
Csp6I GTAC 4 cut(s) 109, 295, 391, 506
CviQI GTAC 4 cut(s) 109, 295, 391, 506
DdeI CTNAG 3 cut(s) 112, 155, 467
DpnI GATC 3 cut(s) 365, 1226, 1268
DpnII GATC 3 cut(s) 363, 1224, 1266
DraIII CACNNNGTG 1 cut(s) 724
Eam1104I CTCTTC 1 cut(s) 1050
EarI CTCTTC 1 cut(s) 1050
EciI GGCGGA 1 cut(s) 1152
Eco130I CCWWGG 2 cut(s) 135, 687
Eco47I GGWCC 2 cut(s) 191, 424
Eco57I CTGAAG 1 cut(s) 664
EcoNI CCTNNNNNAGG 1 cut(s) 1281
EcoO109I RGGNCCY 1 cut(s) 191
EcoRII CCWGG 2 cut(s) 193, 1008
EcoT14I CCWWGG 2 cut(s) 135, 687
EcoT22I ATGCAT 1 cut(s) 264
ErhI CCWWGG 2 cut(s) 135, 687
FalI AAGNNNNNCTT 2 cut(s) 1199, 1231
FblI GTMKAC 1 cut(s) 630
Fnu4HI GCNGC 3 cut(s) 416, 555, 558
FokI GGATG 2 cut(s) 17, 198
Fsp4HI GCNGC 3 cut(s) 416, 555, 558
FspBI CTAG 1 cut(s) 1022
GluI GCNGC 3 cut(s) 416, 555, 558
GsaI CCCAGC 1 cut(s) 654
GsuI CTGGAG 2 cut(s) 423, 752
HaeIII GGCC 2 cut(s) 717, 1033
HapII CCGG 2 cut(s) 14, 275
HincII GTYRAC 2 cut(s) 311, 1231
HindII GTYRAC 2 cut(s) 311, 1231
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 4 cut(s) 455, 736, 1128, 1254
HpaI GTTAAC 1 cut(s) 1231
HpaII CCGG 2 cut(s) 14, 275
HphI GGTGA 3 cut(s) 235, 335, 1266
Hpy166II GTNNAC 6 cut(s) 311, 382, 391, 631, 1118, 1231
Hpy188I TCNGA 1 cut(s) 210
Hpy188III TCNNGA 5 cut(s) 481, 660, 731, 1195, 1264
Hpy8I GTNNAC 6 cut(s) 311, 382, 391, 631, 1118, 1231
Hpy99I CGWCG 2 cut(s) 698, 1094
HpyAV CCTTC 4 cut(s) 49, 415, 762, 1117
HpyCH4III ACNGT 2 cut(s) 667, 1006
HpyCH4IV ACGT 1 cut(s) 696
HpyCH4V TGCA 9 cut(s) 98, 262, 418, 590, 713, 977, 1076, 1176, 1242
HpyF10VI GCNNNNNNNGC 3 cut(s) 358, 375, 596
HpyF3I CTNAG 3 cut(s) 112, 155, 467
HpySE526I ACGT 1 cut(s) 696
KpnI GGTACC 1 cut(s) 298
KspAI GTTAAC 1 cut(s) 1231
Kzo9I GATC 3 cut(s) 363, 1224, 1266
LmnI GCTCC 1 cut(s) 143
Lsp1109I GCAGC 3 cut(s) 402, 566, 569
LweI GCATC 2 cut(s) 249, 1185
MaeI CTAG 1 cut(s) 1022
MaeII ACGT 1 cut(s) 696
MaeIII GTNAC 4 cut(s) 127, 397, 470, 575
MalI GATC 3 cut(s) 365, 1226, 1268
MboI GATC 3 cut(s) 363, 1224, 1266
MboII GAAGA 4 cut(s) 152, 670, 787, 1037
MfeI CAATTG 1 cut(s) 1330
MhlI GDGCHC 1 cut(s) 354
MluCI AATT 4 cut(s) 60, 78, 1063, 1330
MlyI GAGTC 2 cut(s) 449, 1263
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 7 cut(s) 42, 164, 398, 502, 783, 871, 1277
Mph1103I ATGCAT 1 cut(s) 264
MroXI GAANNNNTTC 1 cut(s) 270
MseI TTAA 5 cut(s) 572, 672, 890, 1230, 1289
MslI CAYNNNNRTG 5 cut(s) 134, 612, 815, 923, 1262
MspA1I CMGCKG 1 cut(s) 361
MspCI CTTAAG 1 cut(s) 1288
MspI CCGG 2 cut(s) 14, 275
MspR9I CCNGG 3 cut(s) 195, 276, 1010
MunI CAATTG 1 cut(s) 1330
Mva1269I GAATGC 2 cut(s) 100, 1076
MvaI CCWGG 2 cut(s) 195, 1010
MvnI CGCG 1 cut(s) 1204
MwoI GCNNNNNNNGC 3 cut(s) 358, 375, 596
NciI CCSGG 1 cut(s) 276
NcoI CCATGG 1 cut(s) 135
NdeII GATC 3 cut(s) 363, 1224, 1266
NlaIV GGNNCC 4 cut(s) 192, 273, 296, 351
NmuCI GTSAC 2 cut(s) 127, 397
NsiI ATGCAT 1 cut(s) 264
NspI RCATGY 2 cut(s) 317, 937
PagI TCATGA 2 cut(s) 480, 1263
PciI ACATGT 1 cut(s) 933
PctI GAATGC 2 cut(s) 100, 1076
PdmI GAANNNNTTC 1 cut(s) 270
PfeI GAWTC 2 cut(s) 736, 1128
PflMI CCANNNNNTGG 2 cut(s) 304, 724
PfoI TCCNGGA 1 cut(s) 274
PkrI GCNGC 3 cut(s) 417, 556, 559
PleI GAGTC 2 cut(s) 449, 1262
PpsI GAGTC 2 cut(s) 449, 1262
PpuMI RGGWCCY 1 cut(s) 191
PscI ACATGT 1 cut(s) 933
Psp5II RGGWCCY 1 cut(s) 191
Psp6I CCWGG 2 cut(s) 193, 1008
PspFI CCCAGC 1 cut(s) 650
PspGI CCWGG 2 cut(s) 193, 1008
PspN4I GGNNCC 4 cut(s) 192, 273, 296, 351
PspPI GGNCC 2 cut(s) 191, 424
PspPPI RGGWCCY 1 cut(s) 191
PstI CTGCAG 1 cut(s) 420
PvuII CAGCTG 1 cut(s) 361
RsaI GTAC 4 cut(s) 110, 296, 392, 507
RsaNI GTAC 4 cut(s) 109, 295, 391, 506
RseI CAYNNNNRTG 5 cut(s) 134, 612, 815, 923, 1262
SaqAI TTAA 5 cut(s) 572, 672, 890, 1230, 1289
SatI GCNGC 3 cut(s) 416, 555, 558
Sau3AI GATC 3 cut(s) 363, 1224, 1266
Sau96I GGNCC 2 cut(s) 191, 424
SchI GAGTC 2 cut(s) 449, 1263
ScrFI CCNGG 3 cut(s) 195, 276, 1010
SduI GDGCHC 1 cut(s) 354
SfaNI GCATC 2 cut(s) 249, 1185
SfcI CTRYAG 1 cut(s) 416
SinI GGWCC 2 cut(s) 191, 424
SmiMI CAYNNNNRTG 5 cut(s) 134, 612, 815, 923, 1262
SmlI CTYRAG 1 cut(s) 1288
SmoI CTYRAG 1 cut(s) 1288
Sse9I AATT 4 cut(s) 60, 78, 1063, 1330
SsiI CCGC 3 cut(s) 283, 1137, 1202
SspMI CTAG 1 cut(s) 1022
StyD4I CCNGG 3 cut(s) 193, 274, 1008
StyI CCWWGG 2 cut(s) 135, 687
TaaI ACNGT 2 cut(s) 667, 1006
TaiI ACGT 1 cut(s) 699
TaqI TCGA 1 cut(s) 773
TasI AATT 4 cut(s) 60, 78, 1063, 1330
TatI WGTACW 2 cut(s) 390, 505
TfiI GAWTC 2 cut(s) 736, 1128
Tru1I TTAA 5 cut(s) 572, 672, 890, 1230, 1289
Tru9I TTAA 5 cut(s) 572, 672, 890, 1230, 1289
TscAI CASTG 5 cut(s) 136, 406, 688, 843, 990
TseFI GTSAC 2 cut(s) 127, 397
TseI GCWGC 3 cut(s) 415, 554, 557
Tsp45I GTSAC 2 cut(s) 127, 397
TspDTI ATGAA 6 cut(s) 51, 75, 279, 315, 428, 1042
TspGWI ACGGA 1 cut(s) 61
TspRI CASTG 5 cut(s) 136, 406, 688, 843, 990
Van91I CCANNNNNTGG 2 cut(s) 304, 724
Vha464I CTTAAG 1 cut(s) 1288
VpaK11BI GGWCC 2 cut(s) 191, 424
XagI CCTNNNNNAGG 1 cut(s) 1281
XceI RCATGY 2 cut(s) 317, 937
XmiI GTMKAC 1 cut(s) 630
XmnI GAANNNNTTC 1 cut(s) 270
XspI CTAG 1 cut(s) 1022
Zsp2I ATGCAT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.