RchiOBHm_Chr2g0175521

histone deubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0015292
Physical Location & Seq
Forward (+)
87697249 .. 87700307
3059 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 216 bp
ATGGAGCTACTGAGGGAGAGGCTAATTGAGTGTGGGTGGAAGGATGAAATGAAAGCTCTTTGCAGGTCATTCATAAAGAAAAAAGGAAGGAACAATGTTACTGTGGATGACCTTGTACATGTAATCACCCCAAAGGGCAGAGCCTCCATTCCTGATTCCGTAAAGGCAGAGCTGTTGCAAAGGATTCGTACGTTCCTGATGTCGGCAGCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000124 GO:0000785 GO:0001085 GO:0001091 GO:0001094 GO:0001098 GO:0001099 GO:0002791 GO:0002792 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005694 GO:0005737 GO:0005739 GO:0006325 GO:0006355 GO:0006357 GO:0006403 GO:0006405 GO:0006406 GO:0006464 GO:0006508 GO:0006611 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0008104 GO:0008134 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010639 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016569 GO:0016570 GO:0016578 GO:0016579 GO:0016973 GO:0019219 GO:0019222 GO:0019538 GO:0019904 GO:0023051 GO:0023057 GO:0030374 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031503 GO:0031935 GO:0031936 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032879 GO:0032880 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0034399 GO:0034613 GO:0036211 GO:0040029 GO:0042886 GO:0043035 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0045815 GO:0045893 GO:0045935 GO:0045944 GO:0046676 GO:0046883 GO:0046888 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050657 GO:0050658 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0050796 GO:0051028 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051168 GO:0051169 GO:0051171 GO:0051173 GO:0051179 GO:0051223 GO:0051224 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051276 GO:0051641 GO:0051649 GO:0060255 GO:0060341 GO:0060968 GO:0060969 GO:0061178 GO:0061179 GO:0065007 GO:0065008 GO:0070013 GO:0070201 GO:0070390 GO:0070461 GO:0070646 GO:0070647 GO:0070727 GO:0070742 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071819 GO:0071840 GO:0080090 GO:0090087 GO:0090276 GO:0090278 GO:0097159 GO:0140110 GO:1901363 GO:1901564 GO:1902275 GO:1902493 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903530 GO:1903531 GO:1904950 GO:1905268 GO:1905368 GO:1990234 GO:2000112 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EnY2

Protein Analysis

71

Amino Acids

8.14

Weight (kDa)

9.69

Isoelectric Point (pI)

41.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EnY2 PF10163 2 - 66 1.8e-25 Transcription factor e(y)2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015292)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27100 AT3G27100
fragaria_vesca FvH4_6g53480 FvH4_6g53480
malus_domestica MD00G1139400.v1.1 MD09G1011100.v1.1
prunus_persica Prupe.3G305900_v2.0.a1 Prupe.3G305900_v2.0.a1
pyrus_communis pycom111g00940
rosa_chinensis RchiOBHm_Chr2g0175521
rosa_laevigata RLG00000022335
rosa_multiflora Rmu_sc0021955.1_g000007
rosa_roxburghii Rroxscaffold_2G00077240
rosa_rugosa Rorug02G0585800
rosa_samantha Rh2CG639000
rosa_wichuraiana Rw2G054510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 54
AfaI GTAC 2 cut(s) 117, 190
AfiI CCNNNNNNNGG 1 cut(s) 202
AflIII ACRYGT 1 cut(s) 118
AluBI AGCT 4 cut(s) 7, 56, 172, 209
AluI AGCT 4 cut(s) 7, 56, 172, 209
ApeKI GCWGC 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 118
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BfuAI ACCTGC 1 cut(s) 54
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bsc4I CCNNNNNNNGG 1 cut(s) 202
BseGI GGATG 2 cut(s) 49, 112
BseLI CCNNNNNNNGG 1 cut(s) 202
BsiWI CGTACG 1 cut(s) 188
BslI CCNNNNNNNGG 1 cut(s) 202
Bsp1407I TGTACA 1 cut(s) 115
BspMI ACCTGC 1 cut(s) 54
BsrGI TGTACA 1 cut(s) 115
Bst4CI ACNGT 1 cut(s) 103
BstAUI TGTACA 1 cut(s) 115
BstDEI CTNAG 1 cut(s) 11
BstF5I GGATG 2 cut(s) 49, 112
BstNSI RCATGY 1 cut(s) 122
BtsCI GGATG 2 cut(s) 49, 112
BveI ACCTGC 1 cut(s) 54
Csp6I GTAC 2 cut(s) 116, 189
CviAII CATG 1 cut(s) 119
CviJI RGCY 6 cut(s) 7, 22, 56, 143, 172, 209
CviKI_1 RGCY 6 cut(s) 7, 22, 56, 143, 172, 209
CviQI GTAC 2 cut(s) 116, 189
DdeI CTNAG 1 cut(s) 11
FaeI CATG 1 cut(s) 122
FaiI YATR 2 cut(s) 74, 120
FatI CATG 1 cut(s) 118
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 2 cut(s) 56, 119
Fsp4HI GCNGC 1 cut(s) 207
GluI GCNGC 1 cut(s) 207
Hin1II CATG 1 cut(s) 122
HinfI GANTC 2 cut(s) 155, 184
HphI GGTGA 1 cut(s) 118
Hpy188III TCNNGA 2 cut(s) 152, 196
HpyAV CCTTC 2 cut(s) 34, 81
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 2 cut(s) 63, 178
HpyF3I CTNAG 1 cut(s) 11
HpySE526I ACGT 1 cut(s) 191
Hsp92II CATG 1 cut(s) 122
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 3 cut(s) 49, 165, 209
MaeII ACGT 1 cut(s) 191
MaeIII GTNAC 1 cut(s) 97
MluCI AATT 1 cut(s) 24
MnlI CCTC 3 cut(s) 6, 12, 154
MseI TTAA 1 cut(s) 214
NlaIII CATG 1 cut(s) 122
NspI RCATGY 1 cut(s) 122
PciI ACATGT 1 cut(s) 118
PfeI GAWTC 2 cut(s) 155, 184
Pfl23II CGTACG 1 cut(s) 188
PkrI GCNGC 1 cut(s) 208
PscI ACATGT 1 cut(s) 118
PspLI CGTACG 1 cut(s) 188
RsaI GTAC 2 cut(s) 117, 190
RsaNI GTAC 2 cut(s) 116, 189
SaqAI TTAA 1 cut(s) 214
SatI GCNGC 1 cut(s) 207
SetI ASST 7 cut(s) 9, 58, 68, 114, 174, 194, 211
SgeI CNNG 5 cut(s) 76, 125, 131, 164, 208
Sse9I AATT 1 cut(s) 24
TaaI ACNGT 1 cut(s) 103
TaiI ACGT 1 cut(s) 194
TasI AATT 1 cut(s) 24
TatI WGTACW 1 cut(s) 115
TfiI GAWTC 2 cut(s) 155, 184
Tru1I TTAA 1 cut(s) 214
Tru9I TTAA 1 cut(s) 214
TseI GCWGC 1 cut(s) 206
TspDTI ATGAA 3 cut(s) 60, 61, 65
TspGWI ACGGA 1 cut(s) 148
XceI RCATGY 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.