Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008044

Physical Location & Seq

Genomic Coordinates Reverse (-)

3446849 .. 3453996

Gene Structure 7148 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1485 bp

ATGGTTGAGAAGCTCATTGTCAAGTTGATGTACGACAGTTCTCAGCCTCACCACTATCTCGCAGGAAACTTTGCTCCGGTTATTGAGGAAACGCCTCCCACTAAGGACCTCAATGTCATCGGCCATCTTCCTGATTGCTTGAATGGAGAGTTTGTAAGGGTTGGCCCCAACCCCAAGTTTGCCCCGGTTGCTGGATATCACTGGTTTGATGGAGATGGTATGATTCATGGTATGCGGATCAAGGATGGAAAAGCAACATATGTCTCCCGCTATGTAAAGACATCACGTCTTAAGCAAGAAGAGTACTTTGGAGGTGCCAAATTTATGAAGATTGGAGACCTTAAGGGGCTTTTTGGTTTACTCATGGTTTACATGCAGCAGCTGAGAGCTAAACTGAAAATATTAGATATTTCATATGGACATGGGACAGGTAACACAGCTCTCATATATCACCATGGGAAACTTCTAGCTCTTTCAGAGGGAGACAAACCTTATGTTCTCAAAGTTTTGGAAGATGGAGATCTGCAAACAGTTGGCTTGTTGGATTATGACAAGAGATTGAAGCATTCCTTCACTGCTCATCCAAAGGTTGACCCTTTCACTGGGGAGATGTTTACATTTGGCTATTTGCATGATCCACCATATGTCACATACAGAGTAATTTCAAAGGATGGTTTCATGCATGATCCTATACCTATAACAGTACCAGCTCCTATCATGATGCATGATTTTGCCATTACTGAGAACTATGCAATTTTCATGGATCTTCCCTTGTATTTCAGACCAAAGGAAATGGTTAAGGAAGGCAAGCTGATATTCTCATTTGATGAAACAAAAAAAGCTCGCTTTGGTGTCCTTCCACGTTATGCAAAGGATGATTTGCTAATCAGATGGTTTGAGCTTCCAAATTGCTTCATTTTCCATAATGCTGGAATTGCAGACCTTCTGTACTTATCAAGGATTACTGAAGTTAATTTGGCCCCACTTTGGTATGAGATGAGATTCAACTTAAAAACCGGTTTAGCAACACAGAAGAAATTATCTGAATCAGATGTAGATTTTCCTAGGGTGAATGAGAGCTACACTGGAAGGAAGCAACGCTATGTATATGGAACCACACTGGATAGCATTGTGAGGGTGACAGGGATAGTCAAGTTTGATCTGCATGCTGCACCTGAGGTTGGAAAAACGAAAATTGAGGTTGGAGGAAACGTCCAAGGTCTTTATGACCTGGGACCTGGTAGATTTGGTTCTGAGGCTATTTTTGTCCCCCGTGTTCCTGGTATTACTAAAGAAGAAGATGATGGCTACTTGATATTCTTTGTACATGATGAGATTACTGGAAAATCAGCAATTCATGTACTAGATGCAAAAACAATGTCCAGTGATCCTGTTGCAATTGTTGAGTTGCCTCACAGAGTTCCATATGGGTTCCATGCCTTCTTTATGACAGAGGAGCAATTGCAAGAACAAGCTAAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPE65

Protein Analysis

494

Amino Acids

56.04

Weight (kDa)

6.56

Isoelectric Point (pI)

33.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	24 - 310	8.6e-85	Retinal pigment epithelial membrane protein
RPE65	PF03055	329 - 483	3.8e-41	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008044)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63520
fragaria_vesca	FvH4_7g01130 FvH4_7g01130 FvH4_7g01130
malus_domestica	MD02G1309700.v1.1 MD07G1011500.v1.1
prunus_persica	Prupe.2G014700_v2.0.a1 Prupe.2G014700_v2.0.a1
pyrus_communis	pycom02g26070 pycom02g26080 pycom07g00960
rosa_chinensis	RchiOBHm_Chr1g0316181 RchiOBHm_Chr1g0316311
rosa_laevigata	RLG00000030681 RLG00000030689
rosa_multiflora	Rmu_sc0002531.1_g000009 Rmu_sc0008559.1_g000002
rosa_roxburghii	Rroxscaffold_4G00331080 Rroxscaffold_4G00331110
rosa_rugosa	Rorug01G0009600
rosa_samantha	Rh1AG019400 Rh1BG014400 Rh1DG014400
rosa_wichuraiana	Rw1G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	113
AccB1I	GGYRCC	1 cut(s)	314
AciI	CCGC	2 cut(s)	235, 268
AclWI	GGATC	5 cut(s)	245, 629, 680, 771, 1382
AcoI	YGGCCR	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	320
AcuI	CTGAAG	1 cut(s)	987
AfaI	GTAC	6 cut(s)	32, 305, 705, 950, 1326, 1362
AfiI	CCNNNNNNNGG	4 cut(s)	191, 602, 987, 1181
AflII	CTTAAG	2 cut(s)	290, 341
AgeI	ACCGGT	1 cut(s)	1016
AgsI	TTSAA	4 cut(s)	142, 562, 666, 1006
AhdI	GACNNNNNGTC	1 cut(s)	285
AjiI	CACGTC	1 cut(s)	287
AjnI	CCWGG	3 cut(s)	1230, 1237, 1279
AjuI	GAANNNNNNNTTGG	2 cut(s)	291, 323
Alw26I	GTCTC	3 cut(s)	268, 330, 477
AlwI	GGATC	5 cut(s)	245, 629, 680, 771, 1382
AlwNI	CAGNNNCTG	1 cut(s)	382
AoxI	GGCC	3 cut(s)	121, 163, 978
ApeKI	GCWGC	3 cut(s)	376, 379, 1169
ApoI	RAATTY	1 cut(s)	320
ArsI	GACNNNNNNTTYG	2 cut(s)	1364, 1396
AsiGI	ACCGGT	1 cut(s)	1016
AspA2I	CCTAGG	1 cut(s)	1064
AspS9I	GGNCC	4 cut(s)	106, 164, 979, 1235
AsuC2I	CCSGG	1 cut(s)	185
AsuHPI	GGTGA	4 cut(s)	41, 443, 1081, 1150
AvaII	GGWCC	2 cut(s)	106, 1235
AvrII	CCTAGG	1 cut(s)	1064
AxyI	CCTNAGG	1 cut(s)	1176
BanI	GGYRCC	1 cut(s)	314
BbvI	GCAGC	3 cut(s)	388, 391, 1156
BccI	CCATC	8 cut(s)	132, 203, 209, 239, 509, 665, 885, 1298
BciT130I	CCWGG	3 cut(s)	1232, 1239, 1281
BcnI	CCSGG	1 cut(s)	185
BcoDI	GTCTC	3 cut(s)	268, 330, 477
BfaI	CTAG	3 cut(s)	467, 1065, 1364
BfrI	CTTAAG	2 cut(s)	290, 341
BglII	AGATCT	1 cut(s)	520
BisI	GCNGC	3 cut(s)	377, 380, 1170
BlnI	CCTAGG	1 cut(s)	1064
BlsI	GCNGC	3 cut(s)	378, 381, 1171
BmcAI	AGTACT	1 cut(s)	305
Bme1390I	CCNGG	4 cut(s)	185, 1232, 1239, 1281
Bme18I	GGWCC	2 cut(s)	106, 1235
BmeRI	GACNNNNNGTC	1 cut(s)	285
BmgBI	CACGTC	1 cut(s)	287
BmgT120I	GGNCC	4 cut(s)	106, 164, 979, 1235
BmiI	GGNNCC	6 cut(s)	166, 316, 981, 1114, 1236, 1433
BmrFI	CCNGG	4 cut(s)	185, 1232, 1239, 1281
BmrI	ACTGGG	1 cut(s)	612
BmsI	GCATC	2 cut(s)	711, 1357
BmuI	ACTGGG	1 cut(s)	612
BpuMI	CCSGG	1 cut(s)	185
BsaBI	GATNNNNATC	1 cut(s)	519
BsaI	GGTCTC	1 cut(s)	330
BsaJI	CCNNGG	5 cut(s)	183, 454, 1064, 1216, 1231
BsaWI	WCCGGW	2 cut(s)	76, 1016
BsaXI	ACNNNNNCTCC	4 cut(s)	138, 168, 1197, 1227
Bsc4I	CCNNNNNNNGG	4 cut(s)	191, 602, 987, 1181
Bse118I	RCCGGY	1 cut(s)	1016
Bse1I	ACTGG	6 cut(s)	206, 607, 1090, 1125, 1345, 1383
Bse21I	CCTNAGG	1 cut(s)	1176
Bse8I	GATNNNNATC	1 cut(s)	519
BseBI	CCWGG	3 cut(s)	1232, 1239, 1281
BseDI	CCNNGG	5 cut(s)	183, 454, 1064, 1216, 1231
BseGI	GGATG	4 cut(s)	250, 580, 676, 880
BseJI	GATNNNNATC	1 cut(s)	519
BseLI	CCNNNNNNNGG	4 cut(s)	191, 602, 987, 1181
BseMII	CTCAG	5 cut(s)	56, 374, 732, 1167, 1245
BseNI	ACTGG	6 cut(s)	206, 607, 1090, 1125, 1345, 1383
BseRI	GAGGAG	1 cut(s)	1469
BseXI	GCAGC	3 cut(s)	388, 391, 1156
BsgI	GTGCAG	1 cut(s)	1155
BshFI	GGCC	3 cut(s)	123, 165, 980
BshNI	GGYRCC	1 cut(s)	314
BshTI	ACCGGT	1 cut(s)	1016
BsiSI	CCGG	3 cut(s)	77, 185, 1017
BslFI	GGGAC	3 cut(s)	439, 1248, 1253
BslI	CCNNNNNNNGG	4 cut(s)	191, 602, 987, 1181
BsmAI	GTCTC	3 cut(s)	268, 330, 477
BsmFI	GGGAC	3 cut(s)	439, 1248, 1253
BsmI	GAATGC	1 cut(s)	565
BsnI	GGCC	3 cut(s)	123, 165, 980
Bso31I	GGTCTC	1 cut(s)	330
Bsp1407I	TGTACA	1 cut(s)	1324
Bsp143I	GATC	7 cut(s)	237, 520, 634, 685, 763, 1159, 1387
Bsp19I	CCATGG	1 cut(s)	454
BspACI	CCGC	2 cut(s)	235, 268
BspANI	GGCC	3 cut(s)	123, 165, 980
BspCNI	CTCAG	5 cut(s)	55, 375, 733, 1168, 1246
BspHI	TCATGA	1 cut(s)	717
BspLI	GGNNCC	6 cut(s)	166, 316, 981, 1114, 1236, 1433
BspPI	GGATC	5 cut(s)	245, 629, 680, 771, 1382
BspT107I	GGYRCC	1 cut(s)	314
BspTI	CTTAAG	2 cut(s)	290, 341
BspTNI	GGTCTC	1 cut(s)	330
BsrFI	RCCGGY	1 cut(s)	1016
BsrGI	TGTACA	1 cut(s)	1324
BsrI	ACTGG	6 cut(s)	206, 607, 1090, 1125, 1345, 1383
BssAI	RCCGGY	1 cut(s)	1016
BssECI	CCNNGG	5 cut(s)	183, 454, 1064, 1216, 1231
BssMI	GATC	7 cut(s)	237, 520, 634, 685, 763, 1159, 1387
BssT1I	CCWWGG	3 cut(s)	454, 1064, 1216
Bst2UI	CCWGG	3 cut(s)	1232, 1239, 1281
Bst4CI	ACNGT	3 cut(s)	38, 532, 703
Bst6I	CTCTTC	1 cut(s)	294
BstAFI	CTTAAG	2 cut(s)	290, 341
BstAUI	TGTACA	1 cut(s)	1324
BstC8I	GCNNGC	3 cut(s)	809, 844, 1167
BstDEI	CTNAG	7 cut(s)	42, 102, 383, 741, 1176, 1254, 1476
BstDSI	CCRYGG	1 cut(s)	454
BstF5I	GGATG	4 cut(s)	250, 580, 676, 880
BstKTI	GATC	7 cut(s)	240, 523, 637, 688, 766, 1162, 1390
BstMAI	GTCTC	3 cut(s)	268, 330, 477
BstMBI	GATC	7 cut(s)	237, 520, 634, 685, 763, 1159, 1387
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 935
BstNI	CCWGG	3 cut(s)	1232, 1239, 1281
BstNSI	RCATGY	2 cut(s)	376, 1169
BstSCI	CCNGG	4 cut(s)	183, 1230, 1237, 1279
BstV1I	GCAGC	3 cut(s)	388, 391, 1156
BstX2I	RGATCY	2 cut(s)	520, 763
BstXI	CCANNNNNNTGG	1 cut(s)	929
BstYI	RGATCY	2 cut(s)	520, 763
Bsu36I	CCTNAGG	1 cut(s)	1176
BsuRI	GGCC	3 cut(s)	123, 165, 980
BtgI	CCRYGG	1 cut(s)	454
BtrI	CACGTC	1 cut(s)	287
BtsCI	GGATG	4 cut(s)	250, 580, 676, 880
BtsI	GCAGTG	1 cut(s)	573
BtsIMutI	CAGTG	6 cut(s)	199, 573, 600, 1083, 1118, 1390
Cac8I	GCNNGC	3 cut(s)	809, 844, 1167
CaiI	CAGNNNCTG	1 cut(s)	382
CciI	TCATGA	1 cut(s)	717
Cfr10I	RCCGGY	1 cut(s)	1016
Cfr13I	GGNCC	4 cut(s)	106, 164, 979, 1235
CsiI	ACCWGGT	1 cut(s)	1237
Csp6I	GTAC	6 cut(s)	31, 304, 704, 949, 1325, 1361
CspAI	ACCGGT	1 cut(s)	1016
CviQI	GTAC	6 cut(s)	31, 304, 704, 949, 1325, 1361
DdeI	CTNAG	7 cut(s)	42, 102, 383, 741, 1176, 1254, 1476
DpnI	GATC	7 cut(s)	239, 522, 636, 687, 765, 1161, 1389
DpnII	GATC	7 cut(s)	237, 520, 634, 685, 763, 1159, 1387
DrdI	GACNNNNNNGTC	1 cut(s)	113
DriI	GACNNNNNGTC	1 cut(s)	285
DseDI	GACNNNNNNGTC	1 cut(s)	113
EaeI	YGGCCR	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	294
Eam1105I	GACNNNNNGTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	294
Eco130I	CCWWGG	3 cut(s)	454, 1064, 1216
Eco31I	GGTCTC	1 cut(s)	330
Eco32I	GATATC	1 cut(s)	197
Eco47I	GGWCC	2 cut(s)	106, 1235
Eco57I	CTGAAG	1 cut(s)	987
Eco81I	CCTNAGG	1 cut(s)	1176
EcoO109I	RGGNCCY	2 cut(s)	106, 1235
EcoRII	CCWGG	3 cut(s)	1230, 1237, 1279
EcoRV	GATATC	1 cut(s)	197
EcoT14I	CCWWGG	3 cut(s)	454, 1064, 1216
EcoT22I	ATGCAT	2 cut(s)	684, 726
ErhI	CCWWGG	3 cut(s)	454, 1064, 1216
FalI	AAGNNNNNCTT	2 cut(s)	554, 586
FaqI	GGGAC	3 cut(s)	439, 1248, 1253
FauI	CCCGC	1 cut(s)	275
FauNDI	CATATG	4 cut(s)	259, 415, 643, 1426
Fnu4HI	GCNGC	3 cut(s)	377, 380, 1170
FokI	GGATG	4 cut(s)	257, 567, 683, 887
Fsp4HI	GCNGC	3 cut(s)	377, 380, 1170
FspBI	CTAG	3 cut(s)	467, 1065, 1364
GluI	GCNGC	3 cut(s)	377, 380, 1170
HaeIII	GGCC	3 cut(s)	123, 165, 980
HapII	CCGG	3 cut(s)	77, 185, 1017
HincII	GTYRAC	1 cut(s)	592
HindII	GTYRAC	1 cut(s)	592
HinfI	GANTC	3 cut(s)	223, 1002, 1046
HpaII	CCGG	3 cut(s)	77, 185, 1017
HphI	GGTGA	4 cut(s)	41, 443, 1081, 1150
Hpy166II	GTNNAC	4 cut(s)	359, 370, 592, 615
Hpy188I	TCNGA	6 cut(s)	478, 782, 890, 1045, 1051, 1255
Hpy188III	TCNNGA	2 cut(s)	131, 718
Hpy8I	GTNNAC	4 cut(s)	359, 370, 592, 615
HpyAV	CCTTC	6 cut(s)	580, 797, 866, 953, 1083, 1450
HpyCH4III	ACNGT	3 cut(s)	38, 532, 703
HpyCH4IV	ACGT	3 cut(s)	286, 862, 1212
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 935
HpyF3I	CTNAG	7 cut(s)	42, 102, 383, 741, 1176, 1254, 1476
HpySE526I	ACGT	3 cut(s)	286, 862, 1212
Kzo9I	GATC	7 cut(s)	237, 520, 634, 685, 763, 1159, 1387
LmnI	GCTCC	3 cut(s)	79, 715, 1456
Lsp1109I	GCAGC	3 cut(s)	388, 391, 1156
LweI	GCATC	2 cut(s)	711, 1357
MabI	ACCWGGT	1 cut(s)	1237
MaeI	CTAG	3 cut(s)	467, 1065, 1364
MaeII	ACGT	3 cut(s)	286, 862, 1212
MaeIII	GTNAC	3 cut(s)	431, 646, 1138
MalI	GATC	7 cut(s)	239, 522, 636, 687, 765, 1161, 1389
MboI	GATC	7 cut(s)	237, 520, 634, 685, 763, 1159, 1387
MboII	GAAGA	8 cut(s)	119, 311, 340, 524, 758, 1045, 1307, 1310
MfeI	CAATTG	2 cut(s)	1398, 1460
MflI	RGATCY	2 cut(s)	520, 763
MmeI	TCCRAC	3 cut(s)	522, 1162, 1183
Mph1103I	ATGCAT	2 cut(s)	684, 726
MseI	TTAA	5 cut(s)	291, 342, 798, 972, 1010
MspA1I	CMGCKG	1 cut(s)	382
MspCI	CTTAAG	2 cut(s)	290, 341
MspI	CCGG	3 cut(s)	77, 185, 1017
MspR9I	CCNGG	4 cut(s)	185, 1232, 1239, 1281
MunI	CAATTG	2 cut(s)	1398, 1460
Mva1269I	GAATGC	1 cut(s)	565
MvaI	CCWGG	3 cut(s)	1232, 1239, 1281
MwoI	GCNNNNNNNGC	2 cut(s)	188, 935
NciI	CCSGG	1 cut(s)	185
NcoI	CCATGG	1 cut(s)	454
NdeI	CATATG	4 cut(s)	259, 415, 643, 1426
NdeII	GATC	7 cut(s)	237, 520, 634, 685, 763, 1159, 1387
NlaIV	GGNNCC	6 cut(s)	166, 316, 981, 1114, 1236, 1433
NmuCI	GTSAC	2 cut(s)	646, 1138
NsiI	ATGCAT	2 cut(s)	684, 726
NspI	RCATGY	2 cut(s)	376, 1169
PaeI	GCATGC	1 cut(s)	1169
PagI	TCATGA	1 cut(s)	717
PctI	GAATGC	1 cut(s)	565
PfeI	GAWTC	3 cut(s)	223, 1002, 1046
PinAI	ACCGGT	1 cut(s)	1016
PkrI	GCNGC	3 cut(s)	378, 381, 1171
PpuMI	RGGWCCY	2 cut(s)	106, 1235
Psp5II	RGGWCCY	2 cut(s)	106, 1235
Psp6I	CCWGG	3 cut(s)	1230, 1237, 1279
PspGI	CCWGG	3 cut(s)	1230, 1237, 1279
PspN4I	GGNNCC	6 cut(s)	166, 316, 981, 1114, 1236, 1433
PspPI	GGNCC	4 cut(s)	106, 164, 979, 1235
PspPPI	RGGWCCY	2 cut(s)	106, 1235
PsrI	GAACNNNNNNTAC	2 cut(s)	1234, 1266
PstNI	CAGNNNCTG	1 cut(s)	382
PsuI	RGATCY	2 cut(s)	520, 763
PvuII	CAGCTG	1 cut(s)	382
RsaI	GTAC	6 cut(s)	32, 305, 705, 950, 1326, 1362
RsaNI	GTAC	6 cut(s)	31, 304, 704, 949, 1325, 1361
SaqAI	TTAA	5 cut(s)	291, 342, 798, 972, 1010
SatI	GCNGC	3 cut(s)	377, 380, 1170
Sau3AI	GATC	7 cut(s)	237, 520, 634, 685, 763, 1159, 1387
Sau96I	GGNCC	4 cut(s)	106, 164, 979, 1235
ScaI	AGTACT	1 cut(s)	305
ScrFI	CCNGG	4 cut(s)	185, 1232, 1239, 1281
SexAI	ACCWGGT	1 cut(s)	1237
SfaNI	GCATC	2 cut(s)	711, 1357
SinI	GGWCC	2 cut(s)	106, 1235
SmlI	CTYRAG	2 cut(s)	290, 341
SmoI	CTYRAG	2 cut(s)	290, 341
SphI	GCATGC	1 cut(s)	1169
SsiI	CCGC	2 cut(s)	235, 268
SspI	AATATT	1 cut(s)	402
SspMI	CTAG	3 cut(s)	467, 1065, 1364
StyD4I	CCNGG	4 cut(s)	183, 1230, 1237, 1279
StyI	CCWWGG	3 cut(s)	454, 1064, 1216
TaaI	ACNGT	3 cut(s)	38, 532, 703
TaiI	ACGT	3 cut(s)	289, 865, 1215
TatI	WGTACW	4 cut(s)	303, 948, 1324, 1360
TfiI	GAWTC	3 cut(s)	223, 1002, 1046
Tru1I	TTAA	5 cut(s)	291, 342, 798, 972, 1010
Tru9I	TTAA	5 cut(s)	291, 342, 798, 972, 1010
TscAI	CASTG	6 cut(s)	206, 580, 607, 1090, 1125, 1390
TseFI	GTSAC	2 cut(s)	646, 1138
TseI	GCWGC	3 cut(s)	376, 379, 1169
Tsp45I	GTSAC	2 cut(s)	646, 1138
TspDTI	ATGAA	8 cut(s)	215, 341, 402, 667, 748, 843, 904, 1346
TspRI	CASTG	6 cut(s)	206, 580, 607, 1090, 1125, 1390
Vha464I	CTTAAG	2 cut(s)	290, 341
VpaK11BI	GGWCC	2 cut(s)	106, 1235
XapI	RAATTY	1 cut(s)	320
XceI	RCATGY	2 cut(s)	376, 1169
XmaJI	CCTAGG	1 cut(s)	1064
XspI	CTAG	3 cut(s)	467, 1065, 1364
ZrmI	AGTACT	1 cut(s)	305
Zsp2I	ATGCAT	2 cut(s)	684, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.