RchiOBHm_Chr1g0320191

Aminotransferase class-V

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0005987
Physical Location & Seq
Reverse (-)
7841668 .. 7842618
951 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 906 bp
ATGGCCTCCTCCCCCGACCACAACCACACCCTGAACGGCGATTCCAACACCCACGCCTCCAAAAAGCCCAAACTCTCCTTCATCACCCCCTCCGAAATCGCCGCCGAATTCTCCCACCATGACCCCACCATCGCCCGAATCAACAACGGCAGCTTCGGGTCCTGCCCCGACTCCGTCCTCCAGGCCCAGCGCCGCTGGCAGCTCAAGTACCTCTCCCAACCCGATCACTTCTACTTCAACCACCTCCAAGCCGGCATCCTCCACTCCCGCACCCTCATCAAGGACCTCATCAACGCCGACCACGTCAACGAGGTCTCCATCGTCGACAACGCCACCACCGCCGCCGCCATCGTCCTCCAGCAGGCCGCCTGGGGCTTCTCCGAGAGCAAGTTCGAGCAGGGCGATGCCGTTGCCTACTTCACTCGCGCCGGCGGGCACGTCATTAAGGTACCCTTGCCGTTTCCTTTGAATTCCAACGATGAGATTGTAACCGATTTTAAGAAGGCTTTGGAGAAGGGGAAGGCTAATGGTAGGAGGGTTAGGTTAGCTGTGATTGATCATATTACTTCAATGCCGTGTGTGGTTATACCGGTTAAGGAGTTGGTTAAGATTTGTAGGGAGGAGGGAGTTGATCAGGTTTTCGTCGATGCGGCACACAGCATTGGGTGCACTGAGGTTGATATGAAGGAGATTGGGGCTAATTATTATACTAGTAATTTGCACAAGTGGTTCTTTTGCCCGCCGTTGATTGCGTTTTTGTATTGTAGGAAGTCGCCCAAGGGTGTGGAATTGCACCACCCGGTGGTTTCCCATGAGTATGGGAATGGATTGGCTATTGAAAGTGCTTGGATTGGGACTAGGGATTACAGCCCTCAGTTGGTTGTAAGTGTCATTTCTATATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 map00270
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

301

Amino Acids

33.32

Weight (kDa)

6.59

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_5 PF00266 56 - 259 5.9e-11 Aminotransferase class-V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 448
AccB1I GGYRCC 1 cut(s) 448
AccB7I CCANNNNNTGG 1 cut(s) 802
AccI GTMKAC 1 cut(s) 324
AccII CGCG 1 cut(s) 426
AcsI RAATTY 2 cut(s) 107, 469
AdeI CACNNNGTG 1 cut(s) 802
AfaI GTAC 2 cut(s) 209, 450
AfiI CCNNNNNNNGG 4 cut(s) 280, 361, 802, 877
AgeI ACCGGT 1 cut(s) 589
AgsI TTSAA 4 cut(s) 238, 469, 570, 839
AhlI ACTAGT 1 cut(s) 710
AjiI CACGTC 2 cut(s) 304, 439
AjnI CCWGG 2 cut(s) 180, 368
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AloI GAACNNNNNNTCC 2 cut(s) 26, 58
AluBI AGCT 3 cut(s) 153, 202, 548
AluI AGCT 3 cut(s) 153, 202, 548
Alw21I GWGCWC 1 cut(s) 671
Alw26I GTCTC 1 cut(s) 319
Alw44I GTGCAC 1 cut(s) 667
AoxI GGCC 3 cut(s) 3, 183, 363
ApaLI GTGCAC 1 cut(s) 667
ApeKI GCWGC 2 cut(s) 150, 199
ApoI RAATTY 2 cut(s) 107, 469
AsiGI ACCGGT 1 cut(s) 589
Asp718I GGTACC 1 cut(s) 448
AspLEI GCGC 2 cut(s) 192, 428
AspS9I GGNCC 3 cut(s) 159, 184, 283
AsuC2I CCSGG 1 cut(s) 800
AsuHPI GGTGA 1 cut(s) 76
AvaII GGWCC 2 cut(s) 159, 283
BaeGI GKGCMC 2 cut(s) 438, 671
BanI GGYRCC 1 cut(s) 448
Bbv12I GWGCWC 1 cut(s) 671
BbvI GCAGC 2 cut(s) 162, 211
BccI CCATC 3 cut(s) 137, 326, 356
BceAI ACGGC 6 cut(s) 52, 163, 392, 442, 559, 727
BcgI CGANNNNNNTGC 2 cut(s) 392, 426
BciT130I CCWGG 2 cut(s) 182, 370
BclI TGATCA 2 cut(s) 556, 631
BcnI CCSGG 1 cut(s) 800
BcoDI GTCTC 1 cut(s) 319
BcuI ACTAGT 1 cut(s) 710
BfaI CTAG 2 cut(s) 711, 858
BfoI RGCGCY 1 cut(s) 193
BisI GCNGC 8 cut(s) 102, 151, 193, 200, 342, 345, 366, 651
BlsI GCNGC 8 cut(s) 103, 152, 194, 201, 343, 346, 367, 652
Bme1390I CCNGG 3 cut(s) 182, 370, 800
Bme18I GGWCC 2 cut(s) 159, 283
BmgBI CACGTC 2 cut(s) 304, 439
BmgT120I GGNCC 3 cut(s) 159, 184, 283
BmiI GGNNCC 2 cut(s) 160, 450
BmrFI CCNGG 3 cut(s) 182, 370, 800
BmsI GCATC 3 cut(s) 264, 394, 637
BpmI CTGGAG 2 cut(s) 164, 341
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 800
BsaI GGTCTC 1 cut(s) 319
BsaJI CCNNGG 2 cut(s) 369, 777
BsaWI WCCGGW 1 cut(s) 589
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bsc4I CCNNNNNNNGG 4 cut(s) 280, 361, 802, 877
Bse118I RCCGGY 3 cut(s) 251, 428, 589
BseBI CCWGG 2 cut(s) 182, 370
BseDI CCNNGG 2 cut(s) 369, 777
BseGI GGATG 1 cut(s) 255
BseLI CCNNNNNNNGG 4 cut(s) 280, 361, 802, 877
BseMII CTCAG 2 cut(s) 663, 887
BseRI GAGGAG 1 cut(s) 635
BseSI GKGCMC 2 cut(s) 438, 671
BseXI GCAGC 2 cut(s) 162, 211
BseYI CCCAGC 1 cut(s) 186
Bsh1236I CGCG 1 cut(s) 426
BshFI GGCC 3 cut(s) 5, 185, 365
BshNI GGYRCC 1 cut(s) 448
BshTI ACCGGT 1 cut(s) 589
BsiHKAI GWGCWC 1 cut(s) 671
BsiSI CCGG 4 cut(s) 252, 429, 590, 800
BslFI GGGAC 1 cut(s) 868
BslI CCNNNNNNNGG 4 cut(s) 280, 361, 802, 877
BsmAI GTCTC 1 cut(s) 319
BsmFI GGGAC 1 cut(s) 868
BsnI GGCC 3 cut(s) 5, 185, 365
Bso31I GGTCTC 1 cut(s) 319
Bsp1286I GDGCHC 2 cut(s) 438, 671
Bsp143I GATC 3 cut(s) 223, 556, 631
BspANI GGCC 3 cut(s) 5, 185, 365
BspCNI CTCAG 2 cut(s) 664, 886
BspFNI CGCG 1 cut(s) 426
BspLI GGNNCC 2 cut(s) 160, 450
BspT107I GGYRCC 1 cut(s) 448
BspTNI GGTCTC 1 cut(s) 319
BsrFI RCCGGY 3 cut(s) 251, 428, 589
BssAI RCCGGY 3 cut(s) 251, 428, 589
BssECI CCNNGG 2 cut(s) 369, 777
BssMI GATC 3 cut(s) 223, 556, 631
BssT1I CCWWGG 1 cut(s) 777
Bst2UI CCWGG 2 cut(s) 182, 370
BstAPI GCANNNNNTGC 1 cut(s) 666
BstC8I GCNNGC 6 cut(s) 197, 253, 363, 430, 434, 740
BstDEI CTNAG 2 cut(s) 672, 873
BstENI CCTNNNNNAGG 2 cut(s) 278, 359
BstF5I GGATG 1 cut(s) 255
BstFNI CGCG 1 cut(s) 426
BstH2I RGCGCY 1 cut(s) 193
BstHHI GCGC 2 cut(s) 192, 428
BstKTI GATC 3 cut(s) 226, 559, 634
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 3 cut(s) 223, 556, 631
BstMWI GCNNNNNNNGC 3 cut(s) 196, 338, 666
BstNI CCWGG 2 cut(s) 182, 370
BstSCI CCNGG 3 cut(s) 180, 368, 798
BstSLI GKGCMC 2 cut(s) 438, 671
BstUI CGCG 1 cut(s) 426
BstV1I GCAGC 2 cut(s) 162, 211
BstXI CCANNNNNNTGG 2 cut(s) 784, 818
BsuRI GGCC 3 cut(s) 5, 185, 365
BtgZI GCGATG 2 cut(s) 115, 417
BtrI CACGTC 2 cut(s) 304, 439
BtsCI GGATG 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 669
Cac8I GCNNGC 6 cut(s) 197, 253, 363, 430, 434, 740
CfoI GCGC 2 cut(s) 192, 428
Cfr10I RCCGGY 3 cut(s) 251, 428, 589
Cfr13I GGNCC 3 cut(s) 159, 184, 283
Csp6I GTAC 2 cut(s) 208, 449
CspAI ACCGGT 1 cut(s) 589
CviAII CATG 2 cut(s) 119, 812
CviQI GTAC 2 cut(s) 208, 449
DdeI CTNAG 2 cut(s) 672, 873
DpnI GATC 3 cut(s) 225, 558, 633
DpnII GATC 3 cut(s) 223, 556, 631
DraIII CACNNNGTG 1 cut(s) 802
Eco130I CCWWGG 1 cut(s) 777
Eco31I GGTCTC 1 cut(s) 319
Eco47I GGWCC 2 cut(s) 159, 283
EcoNI CCTNNNNNAGG 2 cut(s) 278, 359
EcoO109I RGGNCCY 2 cut(s) 159, 283
EcoRI GAATTC 2 cut(s) 107, 469
EcoRII CCWGG 2 cut(s) 180, 368
EcoT14I CCWWGG 1 cut(s) 777
ErhI CCWWGG 1 cut(s) 777
FaeI CATG 2 cut(s) 122, 815
FaiI YATR 8 cut(s) 120, 561, 587, 683, 708, 813, 819, 899
FalI AAGNNNNNCTT 4 cut(s) 437, 469, 716, 748
FaqI GGGAC 1 cut(s) 868
FatI CATG 2 cut(s) 118, 811
FauI CCCGC 3 cut(s) 275, 425, 747
FbaI TGATCA 2 cut(s) 556, 631
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 8 cut(s) 102, 151, 193, 200, 342, 345, 366, 651
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 8 cut(s) 102, 151, 193, 200, 342, 345, 366, 651
FspBI CTAG 2 cut(s) 711, 858
GlaI GCGC 2 cut(s) 191, 427
GluI GCNGC 8 cut(s) 102, 151, 193, 200, 342, 345, 366, 651
GsaI CCCAGC 1 cut(s) 190
GsuI CTGGAG 2 cut(s) 164, 341
HaeII RGCGCY 1 cut(s) 193
HaeIII GGCC 3 cut(s) 5, 185, 365
HapII CCGG 4 cut(s) 252, 429, 590, 800
HhaI GCGC 2 cut(s) 192, 428
Hin1II CATG 2 cut(s) 122, 815
Hin6I GCGC 2 cut(s) 190, 426
HinP1I GCGC 2 cut(s) 190, 426
HincII GTYRAC 2 cut(s) 307, 325
HindII GTYRAC 2 cut(s) 307, 325
HinfI GANTC 3 cut(s) 41, 138, 170
HpaII CCGG 4 cut(s) 252, 429, 590, 800
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 3 cut(s) 307, 325, 669
Hpy188I TCNGA 2 cut(s) 94, 382
Hpy8I GTNNAC 3 cut(s) 307, 325, 669
Hpy99I CGWCG 2 cut(s) 326, 647
HpyAV CCTTC 5 cut(s) 88, 496, 508, 514, 679
HpyCH4IV ACGT 2 cut(s) 303, 438
HpyCH4V TGCA 3 cut(s) 669, 721, 793
HpyF10VI GCNNNNNNNGC 3 cut(s) 196, 338, 666
HpyF3I CTNAG 2 cut(s) 672, 873
HpySE526I ACGT 2 cut(s) 303, 438
Hsp92II CATG 2 cut(s) 122, 815
HspAI GCGC 2 cut(s) 190, 426
KpnI GGTACC 1 cut(s) 452
KroI GCCGGC 2 cut(s) 251, 428
KroNI GCCGGC 2 cut(s) 253, 430
Ksp22I TGATCA 2 cut(s) 556, 631
Kzo9I GATC 3 cut(s) 223, 556, 631
Lsp1109I GCAGC 2 cut(s) 162, 211
LweI GCATC 3 cut(s) 264, 394, 637
MaeI CTAG 2 cut(s) 711, 858
MaeII ACGT 2 cut(s) 303, 438
MaeIII GTNAC 1 cut(s) 487
MalI GATC 3 cut(s) 225, 558, 633
MboI GATC 3 cut(s) 223, 556, 631
MhlI GDGCHC 2 cut(s) 438, 671
MluCI AATT 5 cut(s) 107, 469, 700, 715, 788
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 2 cut(s) 69, 498
MreI CGCCGGCG 1 cut(s) 428
MroNI GCCGGC 2 cut(s) 251, 428
MseI TTAA 4 cut(s) 444, 498, 594, 606
MslI CAYNNNNRTG 1 cut(s) 816
MspA1I CMGCKG 1 cut(s) 195
MspI CCGG 4 cut(s) 252, 429, 590, 800
MspR9I CCNGG 3 cut(s) 182, 370, 800
MvaI CCWGG 2 cut(s) 182, 370
MvnI CGCG 1 cut(s) 426
MwoI GCNNNNNNNGC 3 cut(s) 196, 338, 666
NaeI GCCGGC 2 cut(s) 253, 430
NciI CCSGG 1 cut(s) 800
NdeII GATC 3 cut(s) 223, 556, 631
NgoMIV GCCGGC 2 cut(s) 251, 428
NlaIII CATG 2 cut(s) 122, 815
NlaIV GGNNCC 2 cut(s) 160, 450
PcsI WCGNNNNNNNCGW 2 cut(s) 300, 399
PdiI GCCGGC 2 cut(s) 253, 430
PfeI GAWTC 2 cut(s) 41, 138
PflFI GACNNNGTC 2 cut(s) 173, 302
PflMI CCANNNNNTGG 1 cut(s) 802
PinAI ACCGGT 1 cut(s) 589
PkrI GCNGC 8 cut(s) 103, 152, 194, 201, 343, 346, 367, 652
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PpuMI RGGWCCY 2 cut(s) 159, 283
Psp5II RGGWCCY 2 cut(s) 159, 283
Psp6I CCWGG 2 cut(s) 180, 368
PspFI CCCAGC 1 cut(s) 186
PspGI CCWGG 2 cut(s) 180, 368
PspN4I GGNNCC 2 cut(s) 160, 450
PspPI GGNCC 3 cut(s) 159, 184, 283
PspPPI RGGWCCY 2 cut(s) 159, 283
PsyI GACNNNGTC 2 cut(s) 173, 302
RsaI GTAC 2 cut(s) 209, 450
RsaNI GTAC 2 cut(s) 208, 449
RseI CAYNNNNRTG 1 cut(s) 816
SalI GTCGAC 1 cut(s) 323
SaqAI TTAA 4 cut(s) 444, 498, 594, 606
SatI GCNGC 8 cut(s) 102, 151, 193, 200, 342, 345, 366, 651
Sau3AI GATC 3 cut(s) 223, 556, 631
Sau96I GGNCC 3 cut(s) 159, 184, 283
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 3 cut(s) 182, 370, 800
SduI GDGCHC 2 cut(s) 438, 671
SfaNI GCATC 3 cut(s) 264, 394, 637
SgrAI CRCCGGYG 1 cut(s) 428
SinI GGWCC 2 cut(s) 159, 283
SmiMI CAYNNNNRTG 1 cut(s) 816
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SpeI ACTAGT 1 cut(s) 710
Sse9I AATT 5 cut(s) 107, 469, 700, 715, 788
SspMI CTAG 2 cut(s) 711, 858
StyD4I CCNGG 3 cut(s) 180, 368, 798
StyI CCWWGG 1 cut(s) 777
TaiI ACGT 2 cut(s) 306, 441
TaqI TCGA 3 cut(s) 324, 393, 645
TasI AATT 5 cut(s) 107, 469, 700, 715, 788
TauI GCSGC 6 cut(s) 104, 195, 344, 347, 368, 653
TfiI GAWTC 2 cut(s) 41, 138
Tru1I TTAA 4 cut(s) 444, 498, 594, 606
Tru9I TTAA 4 cut(s) 444, 498, 594, 606
TscAI CASTG 1 cut(s) 676
TseI GCWGC 2 cut(s) 150, 199
TspDTI ATGAA 2 cut(s) 70, 698
TspGWI ACGGA 1 cut(s) 163
TspRI CASTG 1 cut(s) 676
Tth111I GACNNNGTC 2 cut(s) 173, 302
Van91I CCANNNNNTGG 1 cut(s) 802
VneI GTGCAC 1 cut(s) 667
VpaK11BI GGWCC 2 cut(s) 159, 283
XagI CCTNNNNNAGG 2 cut(s) 278, 359
XapI RAATTY 2 cut(s) 107, 469
XmiI GTMKAC 1 cut(s) 324
XspI CTAG 2 cut(s) 711, 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.