Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009424

Physical Location & Seq

Genomic Coordinates Forward (+)

11420338 .. 11424436

Gene Structure 4099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2973 bp

ATGGACGACGACGCAACGACGTCGTTCGCCGACCACAAGCTCTGCGGCTTCCTCTACGCCGTTCTCGCCGTCACTTCCCCGGCGGACCCACCCGACCTCCCCTTCGGAACGCGCTTCCGCGCAGCTCCCGACGTCAGTTTCAAATCCCAAAACGACGACGCCGTCGTCCTCTCGCCGGTGCCGGAAAACTCCTCTGATTCGGAGCAATGCGAGGGGGAATTGGGGAGGAGGACGAGGACGAGGAAGAGGAGTATAGGGCTGGTGAATGGGAGCATAAGCGTGGTGCACCAGCTTCACGCTTTGGTGATGAACAAGTGCATCAAGATCGATGCTTTGTTGGTTCGGGTTGAGGCCGCCGGCGTCGGTGGGCAACAACTCAGGGCTGTGCTGCTGGTTGATGTCTATCTTCCGATTGAGTTATGGTGTGGTTGGCAGTTTCCGAAATCGCGGTCTATTGCCGGGGCTCTGTTTCGACACTTGAGTTCTGACTGGGGGGAGAGAAGTGCAATGCTGGCTGACAAAGATTATCTTGAAAATAATCTAGGAGGTGGCAGAAACATATGGAATCTTTCTGACTGTCATGTTTTTGGTTGCAAACTGCATCATAATTTCACTGATTCTTCAAAGAAGAAGCTATTTGAGCTTCATGAAATTTTTAAGAGTTTACCTAGTGTGGCAGAGACAGGAAACCCTAGTTCTGCTAGAATACAACCAGTTGATGACTCCTGTAAAGCTGGTATTTGGGATATATCTGATGACATATTACTAAATATCCTAGCTACACTCAACCCAATGGACCTTGTTAGGGTGTCTGCAACTTGTTGCCATTTGAGAACCTTGGCTGTCTCAATCATGCCATGCATGAAACTTAAATTATTTCCTCATCAGCAGGTAGCAGTTGAATGGATGCTTCAACGTGAGAAAAAGGCTAAAGTTTTGCCCCATCCATTGTATCTGGCTTTCTCAACTGAAGATGGATTTTCTTTCTGTATTAACACTATTTCTGGAGAAATTGTCACTGGCGAAGCTCCCACTATCAGTGATTTTCATGGGGGAATGTTCTGTGATGAACCTGGACTAGGAAAGACCATAACTGCTCTTTCACTGATTCTGAAGACACAAGGAACTCTGGCAACTCCTCCAGATGGGGTACAAGTGAATTGGTGTACACATAATGGAGACCAGAAATGTGGTTATTATGAGCTTGATGGTGATGACGTGGCTGGTAGTAGTATGCTCCCAATAAAGAGGGATATGGGTCAGAAAGCTCAAAATGGTCTTGGCGATTCCAAATACTGCCGATCTAAAAGAGCCAGGCTACTTCTTGATGAGCAAATTCCAGGATTCACCAATTCATGTCCTGGCAAAGTAATGGAAACACCAGCAGCTGCATACTCTAATTCAGCAGTGTGTGTGGTTCGGTGCAGTAGGAGCTTAAGTGGCATAAAAAAAGATCTTCTGCCATCATTTCAAGGAGCATCCAGCTATCCCAAACAAACAAAGGCTGGAAAAAACTCAAGTAGATTGTCCAATGACACCTGGGTTCAGTGTGATGTATGCCGTAAGTGGCGGAAGCTTCCAGAAAGTAGTATTGCTGATGCTAGCGCGCCATGGTTCTGTAGCATGAATTCTGACCCTTTCTACCAGAGTTGTAGTGTTCCTGAAGAATCCTATGATAATTCTGAGCCAATAACGCATTTACTAGGGTTTTACACCAAGGGAACGGCTGGAGGGGAGGAACAAAATGTTTCTTTTTTCATTAGTGTGCTTAAGGAGAGGTATGCCTTGATAAATTCTATTACAAAGAAAGCCCTATCTTGGTTGGCTAAACTTTCTTCTGACCAGCTGTCAGTAATGGAGACAGTTGGTCTGCGAAGTCCTTTTGTAAGCTCTTGTGTAGAGTTGGGTGATGCCTATCCGTTTCAGGAATTATTTCAAGCATTTGGTCTCAAAAGAAGGGTAGAAAAGGGTGTTATTAAATGGTGTTACCCACGAAGTCTTAACAACATGAGTTTTGATGTTGCTGCTCTCAGAATTGCTCTATCTGTGCCATTGAACTCAGTGAGGCGGTATCTTTCAAGAGCAACTTTAATTGTTGTCCCATCAAATTTAGTTGATCACTGGGAAACGCAAATTAAGAAGCATGTCAGGCCTGGTCAGCTGCGAGTTTATGTGTGGAGTGACCATAAGAAGCCTTCTGCACACAGTCTGGCATGGGACTATGATGTTATCATAACAACATTCAGTCGTTTGAGTGCAGAGTGGGGCCCCCGTAAAAAAAGTGCACTGATGCAAGTGCATTGGCTTAGAGTCATGTTAGATGAGGGGCATACCCTTGGCCAAAGTCTTAGCTTGACAAACAAAATGCAAATGGCAGTTTCATTGATGGCTTCAAACCGTTGGATATTGACGGGAACTCCGACTCCTAATACACCCAATAGTCAACTATCACACCTTCAACCATTGCTCAAGTTCCTTCATGAGGAATCCTATGGGCGGAACTATAAGTCATGGGAAGCTGGGATTCTTAGGCCTTTTGAAGCAAAGATGGAAGAAGGACGATCACGTTTGTTGCATTTACTACATAGGTGCATGATTAGTGCTAGAAAGATAGATTTGCAGACTATTCCACCCTGCATCAAGAAAGCTACTTTTCTTGATTTTGCTGAGGAACATGCCAGAAGTTATAATGAATTGGTAGAGACAGTTAGGCGCAATATACTATTGGCTGACTGGAATGATGATTCTCATGTTGAGAGTCTTCTGAATCGAAAGCAGTGGAAATTTCGAAGTACAACTATCAAAAATGTTAGGCTATCTTGCTGTGTGGCCGGGCATATAAAAGTAACAGATGCTGGCGAAGATATTCAAGAAACAATGGATATTTTAGTTGAAAAGGGTCTACATCCCATGTCAGAGGAGTATGCTTTTATAAGATATAATATTCTTTATGGTGGCAACTGTGTCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Helicase_C SNF2_N zf-CW

Protein Analysis

990

Amino Acids

110.59

Weight (kDa)

8.35

Isoelectric Point (pI)

47.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	295 - 914	6.6e-67	SNF2-related domain
zf-CW	PF07496	513 - 556	6.1e-16	CW-type Zinc Finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54460 AT3G54460
fragaria_vesca	FvH4_7g02950 FvH4_7g02950 FvH4_7g02950
malus_domestica	MD02G1288500.v1.1 MD07G1038300.v1.1
prunus_persica	Prupe.2G034500_v2.0.a1 Prupe.2G034500_v2.0.a1
pyrus_communis	pycom07g02660
rosa_chinensis	RchiOBHm_Chr1g0323901
rosa_laevigata	RLG00000030243 RLG00000031960
rosa_multiflora	Rmu_sc0001449.1_g000002 Rmu_sc0012343.1_g000008
rosa_roxburghii	Rroxscaffold_4G00326120
rosa_rugosa	Rorug01G0040500.1
rosa_samantha	Rh1CG059700 Rh1CG060300 Rh1DG063700 Rh1DG064300
rosa_wichuraiana	Rw0G011390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2688, 2933
AasI	GACNNNNNNGTC	2 cut(s)	161, 164
AatII	GACGTC	2 cut(s)	23, 135
Acc36I	ACCTGC	1 cut(s)	880
AccB1I	GGYRCC	1 cut(s)	178
AccI	GTMKAC	1 cut(s)	2902
AccII	CGCG	4 cut(s)	112, 120, 448, 1607
AciI	CCGC	8 cut(s)	45, 83, 118, 354, 448, 1570, 2068, 2497
AcoI	YGGCCR	2 cut(s)	2338, 2829
AcsI	RAATTY	6 cut(s)	651, 1335, 1627, 1792, 2107, 2783
AcuI	CTGAAG	3 cut(s)	990, 1133, 1683
AcyI	GRCGYC	4 cut(s)	20, 132, 159, 360
AfaI	GTAC	3 cut(s)	1152, 1168, 2794
AfiI	CCNNNNNNNGG	7 cut(s)	175, 805, 1079, 1145, 1818, 2482, 2496
AflII	CTTAAG	2 cut(s)	1435, 1769
AhdI	GACNNNNNGTC	2 cut(s)	1846, 1866
AjiI	CACGTC	1 cut(s)	1219
AjnI	CCWGG	6 cut(s)	1072, 1313, 1339, 1360, 1538, 2152
AloI	GAACNNNNNNTCC	2 cut(s)	2407, 2439
Alw21I	GWGCWC	2 cut(s)	288, 2287
Alw26I	GTCTC	6 cut(s)	674, 850, 1173, 1853, 1952, 2696
Alw44I	GTGCAC	2 cut(s)	284, 2283
AlwNI	CAGNNNCTG	2 cut(s)	1388, 2855
AoxI	GGCC	6 cut(s)	351, 2150, 2266, 2338, 2531, 2829
ApaI	GGGCCC	1 cut(s)	2270
ApaLI	GTGCAC	2 cut(s)	284, 2283
ApeKI	GCWGC	6 cut(s)	122, 388, 1385, 1388, 2024, 2161
ApoI	RAATTY	6 cut(s)	651, 1335, 1627, 1792, 2107, 2783
ArsI	GACNNNNNNTTYG	4 cut(s)	86, 118, 434, 466
Asp700I	GAANNNNTTC	2 cut(s)	1932, 2865
AspLEI	GCGC	5 cut(s)	114, 122, 1607, 1609, 2715
AspS9I	GGNCC	4 cut(s)	85, 796, 2266, 2267
AsuC2I	CCSGG	3 cut(s)	80, 460, 2833
AsuHPI	GGTGA	5 cut(s)	274, 316, 1223, 1339, 1919
AsuII	TTCGAA	1 cut(s)	2788
AsuNHI	GCTAGC	1 cut(s)	1601
AvaII	GGWCC	2 cut(s)	85, 796
BaeGI	GKGCMC	3 cut(s)	288, 2270, 2287
BalI	TGGCCA	1 cut(s)	2340
BanI	GGYRCC	1 cut(s)	178
BanII	GRGCYC	2 cut(s)	466, 2270
BbsI	GAAGAC	2 cut(s)	1121, 2753
Bbv12I	GWGCWC	2 cut(s)	288, 2287
BbvCI	CCTCAGC	1 cut(s)	2667
BbvI	GCAGC	6 cut(s)	134, 375, 1375, 1397, 2011, 2148
BccI	CCATC	8 cut(s)	951, 968, 1139, 1202, 1471, 2110, 2380, 2542
BceAI	ACGGC	5 cut(s)	44, 53, 146, 1545, 1740
BcgI	CGANNNNNNTGC	3 cut(s)	37, 307, 341
BciT130I	CCWGG	6 cut(s)	1074, 1315, 1341, 1362, 1540, 2154
BclI	TGATCA	1 cut(s)	2116
BcnI	CCSGG	3 cut(s)	80, 460, 2833
BcoDI	GTCTC	6 cut(s)	674, 850, 1173, 1853, 1952, 2696
BfaI	CTAG	9 cut(s)	542, 669, 693, 702, 776, 1079, 1602, 1703, 2604
BfmI	CTRYAG	1 cut(s)	1618
BfrI	CTTAAG	2 cut(s)	1435, 1769
BfuAI	ACCTGC	1 cut(s)	880
BglII	AGATCT	1 cut(s)	1453
BisI	GCNGC	8 cut(s)	46, 123, 354, 389, 1386, 1389, 2025, 2162
BlsI	GCNGC	8 cut(s)	47, 124, 355, 390, 1387, 1390, 2026, 2163
Bme1390I	CCNGG	9 cut(s)	80, 460, 1074, 1315, 1341, 1362, 1540, 2154, 2833
Bme18I	GGWCC	2 cut(s)	85, 796
BmeRI	GACNNNNNGTC	2 cut(s)	1846, 1866
BmgBI	CACGTC	1 cut(s)	1219
BmgT120I	GGNCC	4 cut(s)	85, 796, 2266, 2267
BmiI	GGNNCC	5 cut(s)	87, 180, 2267, 2268, 2269
BmrFI	CCNGG	9 cut(s)	80, 460, 1074, 1315, 1341, 1362, 1540, 2154, 2833
BmrI	ACTGGG	2 cut(s)	499, 2131
BmtI	GCTAGC	1 cut(s)	1605
BmuI	ACTGGG	2 cut(s)	499, 2131
BpiI	GAAGAC	2 cut(s)	1121, 2753
BpmI	CTGGAG	3 cut(s)	1026, 1125, 1749
Bpu10I	CCTNAGC	1 cut(s)	2667
Bpu14I	TTCGAA	1 cut(s)	2788
BpuEI	CTTGAG	3 cut(s)	499, 1501, 2453
BpuMI	CCSGG	3 cut(s)	80, 460, 2833
Bsa29I	ATCGAT	1 cut(s)	327
BsaBI	GATNNNNATC	2 cut(s)	402, 1914
BsaHI	GRCGYC	4 cut(s)	20, 132, 159, 360
BsaI	GGTCTC	2 cut(s)	1173, 1952
BsaJI	CCNNGG	7 cut(s)	78, 459, 837, 1539, 1610, 1716, 2335
Bsc4I	CCNNNNNNNGG	7 cut(s)	175, 805, 1079, 1145, 1818, 2482, 2496
Bse118I	RCCGGY	2 cut(s)	175, 356
Bse1I	ACTGG	5 cut(s)	494, 713, 1024, 2126, 2738
Bse3DI	GCAATG	3 cut(s)	212, 513, 2462
Bse8I	GATNNNNATC	2 cut(s)	402, 1914
BseBI	CCWGG	6 cut(s)	1074, 1315, 1341, 1362, 1540, 2154
BseCI	ATCGAT	1 cut(s)	327
BseDI	CCNNGG	7 cut(s)	78, 459, 837, 1539, 1610, 1716, 2335
BseGI	GGATG	4 cut(s)	912, 943, 1478, 2905
BseJI	GATNNNNATC	2 cut(s)	402, 1914
BseLI	CCNNNNNNNGG	7 cut(s)	175, 805, 1079, 1145, 1818, 2482, 2496
BseMI	GCAATG	3 cut(s)	212, 513, 2462
BseMII	CTCAG	5 cut(s)	391, 1674, 2044, 2073, 2658
BseNI	ACTGG	5 cut(s)	494, 713, 1024, 2126, 2738
BsePI	GCGCGC	1 cut(s)	1605
BseRI	GAGGAG	5 cut(s)	181, 241, 262, 1128, 2933
BseSI	GKGCMC	3 cut(s)	288, 2270, 2287
BseXI	GCAGC	6 cut(s)	134, 375, 1375, 1397, 2011, 2148
BseYI	CCCAGC	1 cut(s)	2519
BsgI	GTGCAG	3 cut(s)	1444, 2184, 2277
Bsh1236I	CGCG	4 cut(s)	112, 120, 448, 1607
BshFI	GGCC	6 cut(s)	353, 2152, 2268, 2340, 2533, 2831
BshNI	GGYRCC	1 cut(s)	178
BshVI	ATCGAT	1 cut(s)	327
BsiHKAI	GWGCWC	2 cut(s)	288, 2287
BsiSI	CCGG	6 cut(s)	80, 176, 182, 357, 459, 2832
BslFI	GGGAC	2 cut(s)	2084, 2231
BslI	CCNNNNNNNGG	7 cut(s)	175, 805, 1079, 1145, 1818, 2482, 2496
BsmAI	GTCTC	6 cut(s)	674, 850, 1173, 1853, 1952, 2696
BsmFI	GGGAC	2 cut(s)	2084, 2231
BsnI	GGCC	6 cut(s)	353, 2152, 2268, 2340, 2533, 2831
Bso31I	GGTCTC	2 cut(s)	1173, 1952
Bsp119I	TTCGAA	1 cut(s)	2788
Bsp120I	GGGCCC	1 cut(s)	2266
Bsp1286I	GDGCHC	4 cut(s)	288, 466, 2270, 2287
Bsp1407I	TGTACA	1 cut(s)	1166
Bsp143I	GATC	5 cut(s)	324, 1301, 1453, 2116, 2561
Bsp19I	CCATGG	1 cut(s)	1610
BspACI	CCGC	8 cut(s)	45, 83, 118, 354, 448, 1570, 2068, 2497
BspANI	GGCC	6 cut(s)	353, 2152, 2268, 2340, 2533, 2831
BspCNI	CTCAG	5 cut(s)	390, 1675, 2043, 2072, 2659
BspDI	ATCGAT	1 cut(s)	327
BspFNI	CGCG	4 cut(s)	112, 120, 448, 1607
BspHI	TCATGA	2 cut(s)	646, 2479
BspLI	GGNNCC	5 cut(s)	87, 180, 2267, 2268, 2269
BspMI	ACCTGC	1 cut(s)	880
BspOI	GCTAGC	1 cut(s)	1605
BspT104I	TTCGAA	1 cut(s)	2788
BspT107I	GGYRCC	1 cut(s)	178
BspTI	CTTAAG	2 cut(s)	1435, 1769
BspTNI	GGTCTC	2 cut(s)	1173, 1952
BsrDI	GCAATG	3 cut(s)	212, 513, 2462
BsrFI	RCCGGY	2 cut(s)	175, 356
BsrGI	TGTACA	1 cut(s)	1166
BsrI	ACTGG	5 cut(s)	494, 713, 1024, 2126, 2738
BssAI	RCCGGY	2 cut(s)	175, 356
BssECI	CCNNGG	7 cut(s)	78, 459, 837, 1539, 1610, 1716, 2335
BssHII	GCGCGC	1 cut(s)	1605
BssMI	GATC	5 cut(s)	324, 1301, 1453, 2116, 2561
BssNI	GRCGYC	4 cut(s)	20, 132, 159, 360
BssT1I	CCWWGG	4 cut(s)	837, 1610, 1716, 2335
Bst2UI	CCWGG	6 cut(s)	1074, 1315, 1341, 1362, 1540, 2154
Bst4CI	ACNGT	6 cut(s)	578, 1864, 2207, 2399, 2707, 2963
Bst6I	CTCTTC	1 cut(s)	239
BstACI	GRCGYC	4 cut(s)	20, 132, 159, 360
BstAFI	CTTAAG	2 cut(s)	1435, 1769
BstAUI	TGTACA	1 cut(s)	1166
BstBI	TTCGAA	1 cut(s)	2788
BstC8I	GCNNGC	5 cut(s)	358, 513, 1603, 1607, 2857
BstDEI	CTNAG	8 cut(s)	377, 1683, 2030, 2059, 2306, 2348, 2528, 2667
BstDSI	CCRYGG	1 cut(s)	1610
BstENI	CCTNNNNNAGG	2 cut(s)	1077, 2480
BstF5I	GGATG	4 cut(s)	912, 943, 1478, 2905
BstFNI	CGCG	4 cut(s)	112, 120, 448, 1607
BstHHI	GCGC	5 cut(s)	114, 122, 1607, 1609, 2715
BstKTI	GATC	5 cut(s)	327, 1304, 1456, 2119, 2564
BstMAI	GTCTC	6 cut(s)	674, 850, 1173, 1853, 1952, 2696
BstMBI	GATC	5 cut(s)	324, 1301, 1453, 2116, 2561
BstMWI	GCNNNNNNNGC	8 cut(s)	65, 512, 640, 1431, 1440, 1693, 2149, 2158
BstNI	CCWGG	6 cut(s)	1074, 1315, 1341, 1362, 1540, 2154
BstNSI	RCATGY	2 cut(s)	2147, 2678
BstSCI	CCNGG	9 cut(s)	78, 458, 1072, 1313, 1339, 1360, 1538, 2152, 2831
BstSFI	CTRYAG	1 cut(s)	1618
BstSLI	GKGCMC	3 cut(s)	288, 2270, 2287
BstUI	CGCG	4 cut(s)	112, 120, 448, 1607
BstV1I	GCAGC	6 cut(s)	134, 375, 1375, 1397, 2011, 2148
BstV2I	GAAGAC	2 cut(s)	1121, 2753
BstX2I	RGATCY	1 cut(s)	1453
BstXI	CCANNNNNNTGG	1 cut(s)	1190
BstYI	RGATCY	1 cut(s)	1453
Bsu15I	ATCGAT	1 cut(s)	327
BsuRI	GGCC	6 cut(s)	353, 2152, 2268, 2340, 2533, 2831
BsuTUI	ATCGAT	1 cut(s)	327
BtgI	CCRYGG	1 cut(s)	1610
BtrI	CACGTC	1 cut(s)	1219
BtsCI	GGATG	4 cut(s)	912, 943, 1478, 2905
BtsI	GCAGTG	2 cut(s)	1413, 2783
BveI	ACCTGC	1 cut(s)	880
Cac8I	GCNNGC	5 cut(s)	358, 513, 1603, 1607, 2857
CaiI	CAGNNNCTG	2 cut(s)	1388, 2855
CciI	TCATGA	2 cut(s)	646, 2479
CfoI	GCGC	5 cut(s)	114, 122, 1607, 1609, 2715
Cfr10I	RCCGGY	2 cut(s)	175, 356
Cfr13I	GGNCC	4 cut(s)	85, 796, 2266, 2267
ClaI	ATCGAT	1 cut(s)	327
CseI	GACGC	3 cut(s)	20, 167, 349
Csp6I	GTAC	3 cut(s)	1151, 1167, 2793
CviQI	GTAC	3 cut(s)	1151, 1167, 2793
DdeI	CTNAG	8 cut(s)	377, 1683, 2030, 2059, 2306, 2348, 2528, 2667
DpnI	GATC	5 cut(s)	326, 1303, 1455, 2118, 2563
DpnII	GATC	5 cut(s)	324, 1301, 1453, 2116, 2561
DrdI	GACNNNNNNGTC	2 cut(s)	161, 164
DriI	GACNNNNNGTC	2 cut(s)	1846, 1866
DseDI	GACNNNNNNGTC	2 cut(s)	161, 164
EaeI	YGGCCR	2 cut(s)	2338, 2829
Eam1104I	CTCTTC	1 cut(s)	239
Eam1105I	GACNNNNNGTC	2 cut(s)	1846, 1866
EarI	CTCTTC	1 cut(s)	239
EciI	GGCGGA	3 cut(s)	98, 1585, 2512
Eco130I	CCWWGG	4 cut(s)	837, 1610, 1716, 2335
Eco147I	AGGCCT	2 cut(s)	2152, 2533
Eco24I	GRGCYC	2 cut(s)	466, 2270
Eco31I	GGTCTC	2 cut(s)	1173, 1952
Eco47I	GGWCC	2 cut(s)	85, 796
Eco57I	CTGAAG	3 cut(s)	990, 1133, 1683
EcoNI	CCTNNNNNAGG	2 cut(s)	1077, 2480
EcoO109I	RGGNCCY	2 cut(s)	2266, 2267
EcoRI	GAATTC	1 cut(s)	1627
EcoRII	CCWGG	6 cut(s)	1072, 1313, 1339, 1360, 1538, 2152
EcoT14I	CCWWGG	4 cut(s)	837, 1610, 1716, 2335
EcoT22I	ATGCAT	1 cut(s)	863
EcoT38I	GRGCYC	2 cut(s)	466, 2270
ErhI	CCWWGG	4 cut(s)	837, 1610, 1716, 2335
FalI	AAGNNNNNCTT	4 cut(s)	513, 545, 2071, 2103
FaqI	GGGAC	2 cut(s)	2084, 2231
FauNDI	CATATG	1 cut(s)	560
FbaI	TGATCA	1 cut(s)	2116
FblI	GTMKAC	1 cut(s)	2902
Fnu4HI	GCNGC	8 cut(s)	46, 123, 354, 389, 1386, 1389, 2025, 2162
FokI	GGATG	4 cut(s)	919, 930, 1465, 2892
FriOI	GRGCYC	2 cut(s)	466, 2270
Fsp4HI	GCNGC	8 cut(s)	46, 123, 354, 389, 1386, 1389, 2025, 2162
FspBI	CTAG	9 cut(s)	542, 669, 693, 702, 776, 1079, 1602, 1703, 2604
GlaI	GCGC	5 cut(s)	113, 121, 1606, 1608, 2714
GluI	GCNGC	8 cut(s)	46, 123, 354, 389, 1386, 1389, 2025, 2162
GsaI	CCCAGC	1 cut(s)	2523
GsuI	CTGGAG	3 cut(s)	1026, 1125, 1749
HaeIII	GGCC	6 cut(s)	353, 2152, 2268, 2340, 2533, 2831
HapII	CCGG	6 cut(s)	80, 176, 182, 357, 459, 2832
HgaI	GACGC	3 cut(s)	20, 167, 349
HhaI	GCGC	5 cut(s)	114, 122, 1607, 1609, 2715
Hin1I	GRCGYC	4 cut(s)	20, 132, 159, 360
Hin6I	GCGC	5 cut(s)	112, 120, 1605, 1607, 2713
HinP1I	GCGC	5 cut(s)	112, 120, 1605, 1607, 2713
HincII	GTYRAC	1 cut(s)	2444
HindII	GTYRAC	1 cut(s)	2444
HindIII	AAGCTT	1 cut(s)	1574
HpaII	CCGG	6 cut(s)	80, 176, 182, 357, 459, 2832
HphI	GGTGA	5 cut(s)	274, 316, 1223, 1339, 1919
Hpy166II	GTNNAC	7 cut(s)	286, 665, 1167, 1169, 2285, 2444, 2903
Hpy8I	GTNNAC	7 cut(s)	286, 665, 1167, 1169, 2285, 2444, 2903
Hpy99I	CGWCG	9 cut(s)	11, 14, 22, 25, 134, 158, 161, 167, 365
HpyAV	CCTTC	6 cut(s)	112, 1950, 2205, 2465, 2486, 2549
HpyCH4III	ACNGT	6 cut(s)	578, 1864, 2207, 2399, 2707, 2963
HpyCH4IV	ACGT	5 cut(s)	20, 132, 916, 1218, 2566
HpyF10VI	GCNNNNNNNGC	8 cut(s)	65, 512, 640, 1431, 1440, 1693, 2149, 2158
HpyF3I	CTNAG	8 cut(s)	377, 1683, 2030, 2059, 2306, 2348, 2528, 2667
HpySE526I	ACGT	5 cut(s)	20, 132, 916, 1218, 2566
Hsp92I	GRCGYC	4 cut(s)	20, 132, 159, 360
HspAI	GCGC	5 cut(s)	112, 120, 1605, 1607, 2713
KroI	GCCGGC	1 cut(s)	356
KroNI	GCCGGC	1 cut(s)	358
Ksp22I	TGATCA	1 cut(s)	2116
Kzo9I	GATC	5 cut(s)	324, 1301, 1453, 2116, 2561
LmnI	GCTCC	7 cut(s)	130, 202, 270, 1033, 1242, 1431, 1475
Lsp1109I	GCAGC	6 cut(s)	134, 375, 1375, 1397, 2011, 2148
MaeI	CTAG	9 cut(s)	542, 669, 693, 702, 776, 1079, 1602, 1703, 2604
MaeII	ACGT	5 cut(s)	20, 132, 916, 1218, 2566
MaeIII	GTNAC	5 cut(s)	70, 1015, 1985, 2180, 2845
MalI	GATC	5 cut(s)	326, 1303, 1455, 2118, 2563
MboI	GATC	5 cut(s)	324, 1301, 1453, 2116, 2561
MflI	RGATCY	1 cut(s)	1453
MhlI	GDGCHC	4 cut(s)	288, 466, 2270, 2287
MlsI	TGGCCA	1 cut(s)	2340
MluNI	TGGCCA	1 cut(s)	2340
MlyI	GAGTC	4 cut(s)	716, 2319, 2416, 2767
MmeI	TCCRAC	2 cut(s)	2381, 2444
Mox20I	TGGCCA	1 cut(s)	2340
Mph1103I	ATGCAT	1 cut(s)	863
MreI	CGCCGGCG	1 cut(s)	356
MroNI	GCCGGC	1 cut(s)	356
MroXI	GAANNNNTTC	2 cut(s)	1932, 2865
MscI	TGGCCA	1 cut(s)	2340
MseI	TTAA	9 cut(s)	657, 870, 993, 1436, 1770, 1977, 2001, 2090, 2136
MslI	CAYNNNNRTG	2 cut(s)	278, 1763
Msp20I	TGGCCA	1 cut(s)	2340
MspA1I	CMGCKG	3 cut(s)	1388, 1846, 2161
MspCI	CTTAAG	2 cut(s)	1435, 1769
MspI	CCGG	6 cut(s)	80, 176, 182, 357, 459, 2832
MspR9I	CCNGG	9 cut(s)	80, 460, 1074, 1315, 1341, 1362, 1540, 2154, 2833
MvaI	CCWGG	6 cut(s)	1074, 1315, 1341, 1362, 1540, 2154
MvnI	CGCG	4 cut(s)	112, 120, 448, 1607
MwoI	GCNNNNNNNGC	8 cut(s)	65, 512, 640, 1431, 1440, 1693, 2149, 2158
NaeI	GCCGGC	1 cut(s)	358
NciI	CCSGG	3 cut(s)	80, 460, 2833
NcoI	CCATGG	1 cut(s)	1610
NdeI	CATATG	1 cut(s)	560
NdeII	GATC	5 cut(s)	324, 1301, 1453, 2116, 2561
NgoMIV	GCCGGC	1 cut(s)	356
NheI	GCTAGC	1 cut(s)	1601
NlaIV	GGNNCC	5 cut(s)	87, 180, 2267, 2268, 2269
NmuCI	GTSAC	3 cut(s)	70, 1015, 2180
NsiI	ATGCAT	1 cut(s)	863
NspI	RCATGY	2 cut(s)	2147, 2678
NspV	TTCGAA	1 cut(s)	2788
PagI	TCATGA	2 cut(s)	646, 2479
PauI	GCGCGC	1 cut(s)	1605
PceI	AGGCCT	2 cut(s)	2152, 2533
PcsI	WCGNNNNNNNCGW	3 cut(s)	159, 162, 2417
PdiI	GCCGGC	1 cut(s)	358
PdmI	GAANNNNTTC	2 cut(s)	1932, 2865
PflFI	GACNNNGTC	1 cut(s)	161
PfoI	TCCNGGA	1 cut(s)	1339
PkrI	GCNGC	8 cut(s)	47, 124, 355, 390, 1387, 1390, 2026, 2163
PleI	GAGTC	4 cut(s)	716, 2318, 2416, 2766
PpsI	GAGTC	4 cut(s)	716, 2318, 2416, 2766
PsiI	TTATAA	2 cut(s)	2688, 2933
Psp6I	CCWGG	6 cut(s)	1072, 1313, 1339, 1360, 1538, 2152
PspFI	CCCAGC	1 cut(s)	2519
PspGI	CCWGG	6 cut(s)	1072, 1313, 1339, 1360, 1538, 2152
PspN4I	GGNNCC	5 cut(s)	87, 180, 2267, 2268, 2269
PspOMI	GGGCCC	1 cut(s)	2266
PspPI	GGNCC	4 cut(s)	85, 796, 2266, 2267
PstNI	CAGNNNCTG	2 cut(s)	1388, 2855
PsuI	RGATCY	1 cut(s)	1453
PsyI	GACNNNGTC	1 cut(s)	161
PteI	GCGCGC	1 cut(s)	1605
PvuII	CAGCTG	3 cut(s)	1388, 1846, 2161
RsaI	GTAC	3 cut(s)	1152, 1168, 2794
RsaNI	GTAC	3 cut(s)	1151, 1167, 2793
RseI	CAYNNNNRTG	2 cut(s)	278, 1763
SaqAI	TTAA	9 cut(s)	657, 870, 993, 1436, 1770, 1977, 2001, 2090, 2136
SatI	GCNGC	8 cut(s)	46, 123, 354, 389, 1386, 1389, 2025, 2162
Sau3AI	GATC	5 cut(s)	324, 1301, 1453, 2116, 2561
Sau96I	GGNCC	4 cut(s)	85, 796, 2266, 2267
SchI	GAGTC	4 cut(s)	716, 2319, 2416, 2767
ScrFI	CCNGG	9 cut(s)	80, 460, 1074, 1315, 1341, 1362, 1540, 2154, 2833
SduI	GDGCHC	4 cut(s)	288, 466, 2270, 2287
SfcI	CTRYAG	1 cut(s)	1618
SfuI	TTCGAA	1 cut(s)	2788
SgrAI	CRCCGGYG	2 cut(s)	175, 356
SinI	GGWCC	2 cut(s)	85, 796
SmiMI	CAYNNNNRTG	2 cut(s)	278, 1763
SmlI	CTYRAG	5 cut(s)	478, 1435, 1516, 1769, 2468
SmoI	CTYRAG	5 cut(s)	478, 1435, 1516, 1769, 2468
SseBI	AGGCCT	2 cut(s)	2152, 2533
SsiI	CCGC	8 cut(s)	45, 83, 118, 354, 448, 1570, 2068, 2497
SspI	AATATT	1 cut(s)	2944
SspMI	CTAG	9 cut(s)	542, 669, 693, 702, 776, 1079, 1602, 1703, 2604
StuI	AGGCCT	2 cut(s)	2152, 2533
StyD4I	CCNGG	9 cut(s)	78, 458, 1072, 1313, 1339, 1360, 1538, 2152, 2831
StyI	CCWWGG	4 cut(s)	837, 1610, 1716, 2335
TaaI	ACNGT	6 cut(s)	578, 1864, 2207, 2399, 2707, 2963
TaiI	ACGT	5 cut(s)	23, 135, 919, 1221, 2569
TaqI	TCGA	4 cut(s)	327, 472, 2770, 2788
TatI	WGTACW	2 cut(s)	1166, 2792
TauI	GCSGC	2 cut(s)	48, 356
Tru1I	TTAA	9 cut(s)	657, 870, 993, 1436, 1770, 1977, 2001, 2090, 2136
Tru9I	TTAA	9 cut(s)	657, 870, 993, 1436, 1770, 1977, 2001, 2090, 2136
TseFI	GTSAC	3 cut(s)	70, 1015, 2180
TseI	GCWGC	6 cut(s)	122, 388, 1385, 1388, 2024, 2161
Tsp45I	GTSAC	3 cut(s)	70, 1015, 2180
TspGWI	ACGGA	1 cut(s)	1908
Tth111I	GACNNNGTC	1 cut(s)	161
Vha464I	CTTAAG	2 cut(s)	1435, 1769
VneI	GTGCAC	2 cut(s)	284, 2283
VpaK11BI	GGWCC	2 cut(s)	85, 796
XagI	CCTNNNNNAGG	2 cut(s)	1077, 2480
XapI	RAATTY	6 cut(s)	651, 1335, 1627, 1792, 2107, 2783
XceI	RCATGY	2 cut(s)	2147, 2678
XmiI	GTMKAC	1 cut(s)	2902
XmnI	GAANNNNTTC	2 cut(s)	1932, 2865
XspI	CTAG	9 cut(s)	542, 669, 693, 702, 776, 1079, 1602, 1703, 2604
ZraI	GACGTC	2 cut(s)	21, 133
Zsp2I	ATGCAT	1 cut(s)	863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.