RchiOBHm_Chr1g0325721
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0013444
Physical Location & Seq
Forward (+)
13769726 .. 13772261
2536 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1023 bp
ATGGAGAAAGAGGGTAACCAGGATCAAAACCCATCTCTCCTCTCTAACAATTTGGAGTCTCCAAGATCAAAACCCTTGATTGGTAGTGACAGGCTGAAGAGAGATGAGTGGAGTGAAGGAGCTGTGTCTAGTCTTCTGGAGGCTTATGAGGCCAAATGGGTTCTCAGAAACAGAGCCAAGCTCAAAGGCCATGACTGGGAAGATGTAGCCAGACACGTCTCGTCGCGCGCCAGCTGCTCCAAGTCCCCCAAGACTCAGACGCAGTGCAAGAACAAGATTGAGTCCATGAAGAAACGCTACCGTTCCGAGTCGGCCACGGCTGATGGCTCATCTTGGCCTCTCTATCCAAGACTTGATCTTTTGTTGCGTGGCAGCGGACCACCTCCACCCACAGCAGCAGCAGCAGCAGCAACTGTTGTAGCAGCTGTAGCTACTTCACCGGCACCGCCGCAACAACCGCCGCTATCGGCTCCTCTGGCTCATCATAGCAACCACGCTCTGATGCTATTGGAGCCATCAGTGCCGGTGTCATCGCCGCCTCAACCACCGCCTCCACAGCCACCTCCGCCACATTTAGGAACTGCCCAAAATTCATACGGGTCCGATGGCGTTGATAGGGATGCCAAGGAAGATGGAGTGGGGATGAAATTATCAGACCATGCATCAGACAAGAACCCATTGGAGATAGACAGTAGCACACCAGCCCTTTATAGTGATAAGGAAAAGTTAAGGTCCAAGAGAATGAAGAGGAAAATCGAGAAGAAGACGCGAAGAAGAAGGGAGGAATTAGAGATAGCCGAGAGCATAAGATGGTTAGCCGAGGTTGTGGTAAGATCCGAGCAATCACGAATGGACACAATGAGAGACATAGAGAGGATGAGAGTTGAAGCGGAGGCCAAGAGAGGAGAGATGGATCTGAAGCGCACAGAAATTATTGCCAATACCCAGTTGGAGATTGCAAGGATCTTTGCTGCTGGTGTTGGCAAAGGTGTTGATTCTTCACTAAGAATTGGAAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

340

Amino Acids

37.54

Weight (kDa)

9.44

Isoelectric Point (pI)

64.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 34 - 120 3e-16 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54390 AT3G54390
fragaria_vesca FvH4_7g03380
malus_domestica MD02G1283400.v1.1 MD07G1048900.v1.1
prunus_persica Prupe.2G039000_v2.0.a1
pyrus_communis pycom02g24150 pycom07g03550
rosa_chinensis RchiOBHm_Chr1g0325721
rosa_laevigata RLG00000030111
rosa_multiflora Rmu_sc0000703.1_g000004
rosa_roxburghii Rroxscaffold_4G00324450
rosa_rugosa Rorug01G0053900
rosa_samantha Rh1AG069600 Rh1BG056900 Rh1CG070100 Rh1DG074700
rosa_wichuraiana Rw1G005750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 442
AccII CGCG 3 cut(s) 226, 228, 769
AciI CCGC 9 cut(s) 375, 446, 449, 458, 461, 536, 548, 566, 890
AclWI GGATC 4 cut(s) 30, 828, 921, 971
AcoI YGGCCR 1 cut(s) 312
AcsI RAATTY 1 cut(s) 589
AcuI CTGAAG 2 cut(s) 116, 938
AfiI CCNNNNNNNGG 3 cut(s) 80, 196, 575
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 1 cut(s) 887
AjiI CACGTC 1 cut(s) 217
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 5 cut(s) 122, 181, 234, 425, 431
AluI AGCT 5 cut(s) 122, 181, 234, 425, 431
Alw26I GTCTC 3 cut(s) 63, 223, 858
AlwI GGATC 4 cut(s) 30, 828, 921, 971
AlwNI CAGNNNCTG 1 cut(s) 413
AoxI GGCC 5 cut(s) 150, 187, 312, 335, 894
ApeKI GCWGC 9 cut(s) 234, 372, 395, 398, 401, 404, 407, 422, 971
ApoI RAATTY 1 cut(s) 589
AspLEI GCGC 3 cut(s) 228, 230, 924
AspS9I GGNCC 3 cut(s) 377, 600, 732
AsuHPI GGTGA 1 cut(s) 429
AvaII GGWCC 3 cut(s) 377, 600, 732
BanI GGYRCC 1 cut(s) 442
BarI GAAGNNNNNNTAC 2 cut(s) 281, 313
BbsI GAAGAC 2 cut(s) 125, 770
BbvI GCAGC 9 cut(s) 221, 384, 407, 410, 413, 416, 419, 434, 958
BccI CCATC 7 cut(s) 40, 317, 523, 599, 626, 804, 904
BceAI ACGGC 1 cut(s) 333
BciT130I CCWGG 1 cut(s) 20
BcoDI GTCTC 3 cut(s) 63, 223, 858
BfaI CTAG 1 cut(s) 129
BfmI CTRYAG 1 cut(s) 426
Bme1390I CCNGG 1 cut(s) 20
Bme18I GGWCC 3 cut(s) 377, 600, 732
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 3 cut(s) 377, 600, 732
BmiI GGNNCC 4 cut(s) 444, 471, 513, 601
BmrFI CCNGG 1 cut(s) 20
BmrI ACTGGG 2 cut(s) 205, 940
BmsI GCATC 3 cut(s) 492, 610, 671
BmuI ACTGGG 2 cut(s) 205, 940
BpiI GAAGAC 2 cut(s) 125, 770
BplI GAGNNNNNCTC 2 cut(s) 165, 197
BpmI CTGGAG 1 cut(s) 158
BsaJI CCNNGG 3 cut(s) 315, 624, 819
Bsc4I CCNNNNNNNGG 3 cut(s) 80, 196, 575
Bse118I RCCGGY 2 cut(s) 439, 523
Bse1I ACTGG 2 cut(s) 200, 946
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 3 cut(s) 315, 624, 819
BseGI GGATG 3 cut(s) 625, 648, 882
BseLI CCNNNNNNNGG 3 cut(s) 80, 196, 575
BseMII CTCAG 2 cut(s) 178, 269
BseNI ACTGG 2 cut(s) 200, 946
BsePI GCGCGC 1 cut(s) 226
BseRI GAGGAG 3 cut(s) 29, 462, 918
BseXI GCAGC 9 cut(s) 221, 384, 407, 410, 413, 416, 419, 434, 958
Bsh1236I CGCG 3 cut(s) 226, 228, 769
BshFI GGCC 5 cut(s) 152, 189, 314, 337, 896
BshNI GGYRCC 1 cut(s) 442
BsiSI CCGG 2 cut(s) 440, 524
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 3 cut(s) 80, 196, 575
BsmAI GTCTC 3 cut(s) 63, 223, 858
BsmBI CGTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 229
BsnI GGCC 5 cut(s) 152, 189, 314, 337, 896
Bsp143I GATC 6 cut(s) 22, 65, 355, 833, 913, 963
BspACI CCGC 9 cut(s) 375, 446, 449, 458, 461, 536, 548, 566, 890
BspANI GGCC 5 cut(s) 152, 189, 314, 337, 896
BspCNI CTCAG 2 cut(s) 177, 268
BspFNI CGCG 3 cut(s) 226, 228, 769
BspLI GGNNCC 4 cut(s) 444, 471, 513, 601
BspPI GGATC 4 cut(s) 30, 828, 921, 971
BspT107I GGYRCC 1 cut(s) 442
BsrFI RCCGGY 2 cut(s) 439, 523
BsrI ACTGG 2 cut(s) 200, 946
BssAI RCCGGY 2 cut(s) 439, 523
BssECI CCNNGG 3 cut(s) 315, 624, 819
BssHII GCGCGC 1 cut(s) 226
BssMI GATC 6 cut(s) 22, 65, 355, 833, 913, 963
BssT1I CCWWGG 1 cut(s) 624
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 3 cut(s) 302, 415, 692
Bst6I CTCTTC 2 cut(s) 92, 740
BstC8I GCNNGC 2 cut(s) 228, 232
BstDEI CTNAG 3 cut(s) 164, 255, 1004
BstDSI CCRYGG 1 cut(s) 315
BstEII GGTNACC 1 cut(s) 14
BstF5I GGATG 3 cut(s) 625, 648, 882
BstFNI CGCG 3 cut(s) 226, 228, 769
BstHHI GCGC 3 cut(s) 228, 230, 924
BstKTI GATC 6 cut(s) 25, 68, 358, 836, 916, 966
BstMAI GTCTC 3 cut(s) 63, 223, 858
BstMBI GATC 6 cut(s) 22, 65, 355, 833, 913, 963
BstNI CCWGG 1 cut(s) 20
BstPI GGTNACC 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 18
BstSFI CTRYAG 1 cut(s) 426
BstUI CGCG 3 cut(s) 226, 228, 769
BstV1I GCAGC 9 cut(s) 221, 384, 407, 410, 413, 416, 419, 434, 958
BstV2I GAAGAC 2 cut(s) 125, 770
BstX2I RGATCY 3 cut(s) 833, 913, 963
BstYI RGATCY 3 cut(s) 833, 913, 963
BsuRI GGCC 5 cut(s) 152, 189, 314, 337, 896
BtgI CCRYGG 1 cut(s) 315
BtgZI GCGATG 1 cut(s) 516
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 3 cut(s) 625, 648, 882
BtsI GCAGTG 1 cut(s) 269
BtsIMutI CAGTG 2 cut(s) 269, 525
Cac8I GCNNGC 2 cut(s) 228, 232
CaiI CAGNNNCTG 1 cut(s) 413
CfoI GCGC 3 cut(s) 228, 230, 924
Cfr10I RCCGGY 2 cut(s) 439, 523
Cfr13I GGNCC 3 cut(s) 377, 600, 732
CseI GACGC 2 cut(s) 268, 775
CviAII CATG 3 cut(s) 191, 286, 659
DdeI CTNAG 3 cut(s) 164, 255, 1004
DpnI GATC 6 cut(s) 24, 67, 357, 835, 915, 965
DpnII GATC 6 cut(s) 22, 65, 355, 833, 913, 963
EaeI YGGCCR 1 cut(s) 312
Eam1104I CTCTTC 2 cut(s) 92, 740
EarI CTCTTC 2 cut(s) 92, 740
EciI GGCGGA 1 cut(s) 555
Eco130I CCWWGG 1 cut(s) 624
Eco47I GGWCC 3 cut(s) 377, 600, 732
Eco57I CTGAAG 2 cut(s) 116, 938
Eco91I GGTNACC 1 cut(s) 14
EcoO65I GGTNACC 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 624
EcoT22I ATGCAT 1 cut(s) 664
ErhI CCWWGG 1 cut(s) 624
Esp3I CGTCTC 1 cut(s) 223
FaeI CATG 3 cut(s) 194, 289, 662
FaiI YATR 9 cut(s) 147, 192, 287, 486, 595, 660, 711, 806, 869
FaqI GGGAC 1 cut(s) 229
FatI CATG 3 cut(s) 190, 285, 658
FokI GGATG 3 cut(s) 632, 655, 889
FspBI CTAG 1 cut(s) 129
GlaI GCGC 3 cut(s) 227, 229, 923
GsuI CTGGAG 1 cut(s) 158
HaeIII GGCC 5 cut(s) 152, 189, 314, 337, 896
HapII CCGG 2 cut(s) 440, 524
HgaI GACGC 2 cut(s) 268, 775
HhaI GCGC 3 cut(s) 228, 230, 924
Hin1II CATG 3 cut(s) 194, 289, 662
Hin6I GCGC 3 cut(s) 226, 228, 922
HinP1I GCGC 3 cut(s) 226, 228, 922
HinfI GANTC 5 cut(s) 56, 253, 281, 308, 995
HpaII CCGG 2 cut(s) 440, 524
HphI GGTGA 1 cut(s) 429
Hpy188I TCNGA 9 cut(s) 167, 258, 307, 501, 604, 655, 667, 838, 918
Hpy188III TCNNGA 3 cut(s) 137, 757, 846
Hpy99I CGWCG 1 cut(s) 226
HpyAV CCTTC 2 cut(s) 110, 771
HpyCH4III ACNGT 3 cut(s) 302, 415, 692
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 3 cut(s) 267, 662, 959
HpyF3I CTNAG 3 cut(s) 164, 255, 1004
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 3 cut(s) 194, 289, 662
HspAI GCGC 3 cut(s) 226, 228, 922
Kzo9I GATC 6 cut(s) 22, 65, 355, 833, 913, 963
LmnI GCTCC 4 cut(s) 119, 242, 475, 511
Lsp1109I GCAGC 9 cut(s) 221, 384, 407, 410, 413, 416, 419, 434, 958
LweI GCATC 3 cut(s) 492, 610, 671
MaeI CTAG 1 cut(s) 129
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 2 cut(s) 14, 86
MalI GATC 6 cut(s) 24, 67, 357, 835, 915, 965
MboI GATC 6 cut(s) 22, 65, 355, 833, 913, 963
MflI RGATCY 3 cut(s) 833, 913, 963
MluCI AATT 6 cut(s) 49, 589, 647, 785, 930, 1008
MlyI GAGTC 4 cut(s) 65, 247, 290, 317
MmeI TCCRAC 1 cut(s) 930
Mph1103I ATGCAT 1 cut(s) 664
MseI TTAA 1 cut(s) 728
MspA1I CMGCKG 3 cut(s) 234, 375, 425
MspI CCGG 2 cut(s) 440, 524
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
MvnI CGCG 3 cut(s) 226, 228, 769
NdeII GATC 6 cut(s) 22, 65, 355, 833, 913, 963
NlaIII CATG 3 cut(s) 194, 289, 662
NlaIV GGNNCC 4 cut(s) 444, 471, 513, 601
NmeAIII GCCGAG 2 cut(s) 823, 844
NmuCI GTSAC 1 cut(s) 86
NsiI ATGCAT 1 cut(s) 664
PauI GCGCGC 1 cut(s) 226
PfeI GAWTC 1 cut(s) 995
PleI GAGTC 4 cut(s) 64, 247, 289, 316
PpsI GAGTC 4 cut(s) 64, 247, 289, 316
Psp6I CCWGG 1 cut(s) 18
PspEI GGTNACC 1 cut(s) 14
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 4 cut(s) 444, 471, 513, 601
PspPI GGNCC 3 cut(s) 377, 600, 732
PstNI CAGNNNCTG 1 cut(s) 413
PsuI RGATCY 3 cut(s) 833, 913, 963
PteI GCGCGC 1 cut(s) 226
PvuII CAGCTG 2 cut(s) 234, 425
SaqAI TTAA 1 cut(s) 728
Sau3AI GATC 6 cut(s) 22, 65, 355, 833, 913, 963
Sau96I GGNCC 3 cut(s) 377, 600, 732
SchI GAGTC 4 cut(s) 65, 247, 290, 317
ScrFI CCNGG 1 cut(s) 20
SfaNI GCATC 3 cut(s) 492, 610, 671
SfcI CTRYAG 1 cut(s) 426
SinI GGWCC 3 cut(s) 377, 600, 732
Sse9I AATT 6 cut(s) 49, 589, 647, 785, 930, 1008
SsiI CCGC 9 cut(s) 375, 446, 449, 458, 461, 536, 548, 566, 890
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 18
StyI CCWWGG 1 cut(s) 624
TaaI ACNGT 3 cut(s) 302, 415, 692
TaiI ACGT 1 cut(s) 219
TaqI TCGA 1 cut(s) 756
TasI AATT 6 cut(s) 49, 589, 647, 785, 930, 1008
TauI GCSGC 3 cut(s) 451, 463, 538
TfiI GAWTC 1 cut(s) 995
Tru1I TTAA 1 cut(s) 728
Tru9I TTAA 1 cut(s) 728
TscAI CASTG 2 cut(s) 269, 525
TseFI GTSAC 1 cut(s) 86
TseI GCWGC 9 cut(s) 234, 372, 395, 398, 401, 404, 407, 422, 971
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 4 cut(s) 302, 582, 659, 758
TspRI CASTG 2 cut(s) 269, 525
VpaK11BI GGWCC 3 cut(s) 377, 600, 732
XapI RAATTY 1 cut(s) 589
XcmI CCANNNNNNNNNTGG 1 cut(s) 946
XspI CTAG 1 cut(s) 129
Zsp2I ATGCAT 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.