RchiOBHm_Chr1g0326411

Plant family of unknown function (DUF810)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0005738
Physical Location & Seq
Reverse (-)
14903796 .. 14921454
17659 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 3336 bp
ATGGACGAGGAAAATGCTGTGGAGCTTTTACAGAGGTTTCGCCGCGACAGGCGAATACTGCTTGATTTTATACTGGCTGGTAGCTTAATCAAGAAGGTCATAATGCCTCCCGGGGCGGTTACGCTGGACGATGTGGATCTAGACCAAGTCAGTGTTGATTATGTGCTCAATTGTGCTAAGAAAGGTGGAATGCTTGAACTGTCTGAGGCTATTAGGGACTATCATGACCATACCGGGTTGCCTCAAATGAATAATTCTGGTTCTACTGGTGAATACTTTTTGGTTACGAATCCTGAGTCTTACGGTTCTCCTCCAAAGAGGGCACCACCACCTGTTCCAGACTACACACCGCCTCCTGTTCTCGCGCCACCTCCTGTAATCACACCATCTATTCCAGACCTTGACTCATATCCAGTCGAATCGAATGTATCACAATCTGAATCTTTTAACTCCACACAAGTTCGAGAACTTACTGTAGATGATATTGAAGATTTTGAGGATGATGATTTAGATGAGACTGACAGTCTCAGGATTTCAAGAAGGATTCGTAATGATGCTGCTGATCTTGCTCTTGGATTGCCTTCTTTTAAAACAGGTATTATAGAGGATGATCTCCGCGAGACTGCATATGAAATCCTCTTGGCGTGTGCTGGTGCTGCAGGGGGTCTCATTGTGCCATCAAAAGAGAAAAAGAAAGACAAAAGGTCAAAGCTGATGAGGAAACTAGGACGTAGTAGAAGTGAAAATGTTGTGAGTCAGTCTCAACGAGCACCTGGGATGGTTGGTTTGTTGGAAGCCATGCGTGTCCAGATGGAGATATCTGAGGCAATGGACATCAGAACTAGACAAGGGCTGCTGAATGCACTAGCAGGAAAAGTGGGAAAAAGAATGGATGCCCTACTTGTTCCTTTGGAACTTTTATGTTGTATTTCACGGTCAGAATTTTCTGACAAGAAGGCTTATATACGATGGCAGAAAAGGCAGTTGAATATACTAGAGGAGGGGCTTCTTAATCACACTGCTGTTGGATTTGGGGAGTCTGGACGGAAGGCGAGTGAGTTGAGGATTCTTTTAGCAAAGATTGAAGAATCTGAGTCTCTTCCACCCTCCACCGGTGAACTCCAACGAACAGAATGCTTGAGATCTCTTCGAGAGATTACTGCTCCACTTGCTGAGAGGCCTGCTCGGGGTGACTTGACTGGTGAAGTATGCCACTGGGCAGATGGTTATCATTTGAATGTTAGACTATATGAGAAGCTGCTTGTCAGTGTCTTTGATATGTTAGATGAGGGAAAGCTAACTGAGGAAGTGGAAGAAATACTTGAGCTCTTGAAGTCAACATGGCGTGTTTTAGGTATCACGGAGACCATTCATTACACCTGCTATGCATGGGTCTTATTCCGTCAGCATGTTGTTACCAGTGAGCAAGGAATTTTACAACATGCCATTGAACAGTTAAAGAAAATACCATTGAAGGAACAAAGGGGACCGCAAGAGAGGTTACACTTGAAAAGTTTGCATTCCAGAGTTGAAGGCAAACAGGGTTACCAAGATTTATCTTTCTTACAGTCCTTTTTGTCTCCCATTCAGAAATGGGCTGATAAGCAACTTGGAGACTACCACCTGCACTTCGCTGAGGTGTCAGTTATGATGGAGAATATAGTGACAGTTGCGATGATTACTCGGAGGCTTCTTCTGGAGGAACCTGAAGCAGCTACGATGCAATCTACATCTGCCACTGATCGAGATCAAATAGAATCTTATATATCATCTTCTATCAAGAATGCATTTACAAGGATCTTGCAGTCTCTTGAAAAATCAGACACCAAGCACGAACATCATTTGGCATTGCTTGCTGAAGAGACCAAGAAACTTTTGAAAAAGGACACAGCCTTGTTTATGCCAATTTTATCTCAGAGGCATCCACAAGCAACTGCTGTCTCATCCTCGCTGCTTCATAGGCTTTATGGCAACAAGTTGAAACCTTTTCTTGGTGTTGCTGAGCATCTGACCGAGGATGTGGTATCTGTATTTCCTGCTGCTGACGACCTTGAGCAGTACGTGATGGAACTTATTTTGTCGTCTTGTGGAGAGGAAACTGCAGAGATATACTCTAGGAAAATAGTTCCTTACCAGATTGAGTCTATATCTGGAACATTAGTGATGCGTTGGGTCAATTCACAACTTGCGAGGATCTTAGGTTGGGTTGAACGGGCTATTCAACAAGAGAGGTGGGACCCAATATCACCTCAACAGCGGCATGGGAGTTCAATAGTTGAAGTATTTAGAATTGTAGAGGAGACTGTTGACCAATTTTTTGAGCTTAAGGTTCCAATGAGGTCTTCAGAATTGAGTAGCCTGTTTCGTGGAGTTGACAATGCATTTCAAGTTTATGCAAATCACGTCATTGACAAATTGGCTACAAAGGAGGACTTGATTCCACCTGTGCCCATTCTCACACGATACAAGAAGGAAGCTGGGATAAAGGCTTTTGTAAAAAAGGAACTATTTGACCCTAGGTTGCCTGATGAGAGAAGGTCTACGGAAATTAATGTTCGAACCACTCCAACCCTCTGTGTTCAGTTGAACACACTTTATTATGCAATCAATGAGTTGAATAAGTTGGAAGATGGCATTTGGGAGCGATGGACGAGGAAGAAGCCCCGCCAAAAGTTTATCAAGAAATCCTTGGATGAGAAATCTAAAAGTTTCATGCAGAAGGACACATTTGATGGGAGTAGGAAAGATATAAACGCTGCAATAGACCGAATATGCGAGTTCACCGGAACTAAAATTATCTTTTGGGATTTGAGGGAACCATTTATCAACAACTTATATAAACCAAGTGTTTCTCTTTCTAGGTTCGAGGCAGTGATCGAACCACTTGATATGGAACTTTGTCAACTATGTGATATAATTGTGGAACCACTCAGGGATCGTATTGTGACAAGTCTCCTTCAAGCAACACTGGACGGCTTACTCCGTGTCCTATTAGATGGGGGCCCATCCCGAGTTTTCTCTTTGGGCGATGGAAAACTATTAGAAGAAGATTTAGAGGTCCTCAAGGAGTTTTTTATCTCTGGTGGAGATGGGCTTCCACGAGGAGTGGTTGAAAATCAGGTATCACGCGTTCGGCTTGTGGTAAAGTTGCACAGTTATGAGACTCGAGAACTGATCGATGACTTAAAATCTTCAAGTGGCCTGGAACTGCAGGGTGGTAGAAGCAAACTAGGAGCTGATTCTAAGACTCTATTGCGAATATTATGTCACCGGGGTGATTCAGAGGCCTCCCAATTTGTGAAGAGACAATACAAGATCCCGAAGTCCTCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009987 GO:0010118 GO:0016020 GO:0030054 GO:0044424 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF810

Protein Analysis

1111

Amino Acids

125.76

Weight (kDa)

5.74

Isoelectric Point (pI)

51.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_PATROL1 PF25761 719 - 1109 3.7e-126 PATROL1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1388, 1632
Acc36I ACCTGC 2 cut(s) 1388, 1632
AccB1I GGYRCC 1 cut(s) 322
AccI GTMKAC 1 cut(s) 2540
AccII CGCG 4 cut(s) 45, 365, 618, 3129
AciI CCGC 7 cut(s) 43, 116, 350, 616, 1490, 2257, 2665
AclWI GGATC 5 cut(s) 144, 1805, 2201, 2943, 3310
AcsI RAATTY 2 cut(s) 941, 1431
AcuI CTGAAG 3 cut(s) 1728, 1878, 2328
AfaI GTAC 1 cut(s) 2060
AfiI CCNNNNNNNGG 3 cut(s) 1112, 1187, 1991
AflII CTTAAG 1 cut(s) 2324
AflIII ACRYGT 1 cut(s) 3127
AgeI ACCGGT 1 cut(s) 1112
AhdI GACNNNNNGTC 2 cut(s) 522, 703
AjiI CACGTC 1 cut(s) 2404
AjnI CCWGG 2 cut(s) 772, 3201
AjuI GAANNNNNNNTTGG 2 cut(s) 2326, 2358
AleI CACNNNNGTG 1 cut(s) 3273
Alw21I GWGCWC 3 cut(s) 168, 772, 1329
AlwI GGATC 5 cut(s) 144, 1805, 2201, 2943, 3310
Ama87I CYCGRG 4 cut(s) 110, 1185, 3009, 3165
AoxI GGCC 4 cut(s) 1178, 3001, 3199, 3285
ApaI GGGCCC 1 cut(s) 3005
ApeKI GCWGC 8 cut(s) 557, 656, 853, 1258, 1712, 1951, 2039, 2756
ApoI RAATTY 2 cut(s) 941, 1431
ArsI GACNNNNNNTTYG 6 cut(s) 281, 313, 2300, 2332, 3250, 3282
AseI ATTAAT 1 cut(s) 2550
AsiGI ACCGGT 1 cut(s) 1112
AspA2I CCTAGG 1 cut(s) 2516
AspLEI GCGC 1 cut(s) 367
AspS9I GGNCC 5 cut(s) 1487, 2236, 3001, 3002, 3058
AsuC2I CCSGG 4 cut(s) 111, 112, 235, 3272
AsuHPI GGTGA 8 cut(s) 281, 1127, 1202, 1214, 2238, 2773, 3260, 3287
AsuII TTCGAA 1 cut(s) 2557
AvaI CYCGRG 4 cut(s) 110, 1185, 3009, 3165
AvaII GGWCC 3 cut(s) 1487, 2236, 3058
AvrII CCTAGG 1 cut(s) 2516
BaeGI GKGCMC 3 cut(s) 325, 2451, 3005
BanI GGYRCC 1 cut(s) 322
BanII GRGCYC 2 cut(s) 1329, 3005
BarI GAAGNNNNNNTAC 2 cut(s) 3293, 3325
BauI CACGAG 1 cut(s) 3099
BbsI GAAGAC 1 cut(s) 2334
Bbv12I GWGCWC 3 cut(s) 168, 772, 1329
BbvCI CCTCAGC 1 cut(s) 1635
BbvI GCAGC 8 cut(s) 544, 643, 840, 1245, 1724, 1938, 2026, 2743
BceAI ACGGC 1 cut(s) 2989
BcgI CGANNNNNNTGC 3 cut(s) 30, 1116, 1150
BciT130I CCWGG 2 cut(s) 774, 3203
BcnI CCSGG 4 cut(s) 111, 112, 235, 3272
BfaI CTAG 9 cut(s) 140, 725, 843, 866, 995, 2115, 2517, 2859, 3230
BfmI CTRYAG 4 cut(s) 474, 657, 2100, 3209
BfrI CTTAAG 1 cut(s) 2324
BfuAI ACCTGC 2 cut(s) 1388, 1632
BglII AGATCT 1 cut(s) 1142
BlnI CCTAGG 1 cut(s) 2516
BlpI GCTNAGC 1 cut(s) 2001
Bme1390I CCNGG 6 cut(s) 111, 112, 235, 774, 3203, 3272
Bme18I GGWCC 3 cut(s) 1487, 2236, 3058
BmeRI GACNNNNNGTC 2 cut(s) 522, 703
BmeT110I CYCGRG 4 cut(s) 110, 1185, 3009, 3165
BmgBI CACGTC 1 cut(s) 2404
BmgT120I GGNCC 5 cut(s) 1487, 2236, 3001, 3002, 3058
BmrFI CCNGG 6 cut(s) 111, 112, 235, 774, 3203, 3272
BmrI ACTGGG 1 cut(s) 1225
BmsI GCATC 6 cut(s) 544, 883, 1710, 1930, 2014, 2154
BmuI ACTGGG 1 cut(s) 1225
BpiI GAAGAC 1 cut(s) 2334
BplI GAGNNNNNCTC 6 cut(s) 745, 777, 1168, 1200, 2096, 2128
BpmI CTGGAG 1 cut(s) 1718
Bpu10I CCTNAGC 1 cut(s) 1635
Bpu1102I GCTNAGC 1 cut(s) 2001
Bpu14I TTCGAA 1 cut(s) 2557
BpuEI CTTGAG 4 cut(s) 1159, 1343, 2072, 3047
BpuMI CCSGG 4 cut(s) 111, 112, 235, 3272
Bsa29I ATCGAT 1 cut(s) 3177
BsaAI YACGTR 1 cut(s) 2062
BsaBI GATNNNNATC 3 cut(s) 135, 1227, 1746
BsaI GGTCTC 3 cut(s) 671, 1358, 1856
BsaJI CCNNGG 7 cut(s) 110, 111, 773, 2013, 2516, 2688, 3271
BsaWI WCCGGW 2 cut(s) 1112, 2783
BsaXI ACNNNNNCTCC 2 cut(s) 337, 367
Bsc4I CCNNNNNNNGG 3 cut(s) 1112, 1187, 1991
Bse118I RCCGGY 1 cut(s) 1112
Bse1I ACTGG 7 cut(s) 78, 271, 413, 1204, 1220, 1419, 2973
Bse3DI GCAATG 2 cut(s) 834, 1847
Bse8I GATNNNNATC 3 cut(s) 135, 1227, 1746
BseBI CCWGG 2 cut(s) 774, 3203
BseCI ATCGAT 1 cut(s) 3177
BseDI CCNNGG 7 cut(s) 110, 111, 773, 2013, 2516, 2688, 3271
BseGI GGATG 9 cut(s) 505, 613, 783, 898, 1921, 1943, 2023, 2698, 3005
BseJI GATNNNNATC 3 cut(s) 135, 1227, 1746
BseLI CCNNNNNNNGG 3 cut(s) 1112, 1187, 1991
BseMI GCAATG 2 cut(s) 834, 1847
BseNI ACTGG 7 cut(s) 78, 271, 413, 1204, 1220, 1419, 2973
BseRI GAGGAG 4 cut(s) 300, 1013, 2312, 3117
BseSI GKGCMC 3 cut(s) 325, 2451, 3005
BseXI GCAGC 8 cut(s) 544, 643, 840, 1245, 1724, 1938, 2026, 2743
BseYI CCCAGC 1 cut(s) 2477
BsgI GTGCAG 1 cut(s) 1610
Bsh1236I CGCG 4 cut(s) 45, 365, 618, 3129
BshFI GGCC 4 cut(s) 1180, 3003, 3201, 3287
BshNI GGYRCC 1 cut(s) 322
BshTI ACCGGT 1 cut(s) 1112
BshVI ATCGAT 1 cut(s) 3177
BsiHKAI GWGCWC 3 cut(s) 168, 772, 1329
BsiHKCI CYCGRG 4 cut(s) 110, 1185, 3009, 3165
BsiSI CCGG 5 cut(s) 111, 234, 1113, 2784, 3271
BslFI GGGAC 3 cut(s) 230, 1500, 2249
BslI CCNNNNNNNGG 3 cut(s) 1112, 1187, 1991
BsmFI GGGAC 3 cut(s) 230, 1500, 2249
BsmI GAATGC 5 cut(s) 195, 865, 1139, 1519, 1789
BsnI GGCC 4 cut(s) 1180, 3003, 3201, 3287
Bso31I GGTCTC 3 cut(s) 671, 1358, 1856
BsoBI CYCGRG 4 cut(s) 110, 1185, 3009, 3165
Bsp119I TTCGAA 1 cut(s) 2557
Bsp120I GGGCCC 1 cut(s) 3001
Bsp1286I GDGCHC 6 cut(s) 168, 325, 772, 1329, 2451, 3005
Bsp1720I GCTNAGC 1 cut(s) 2001
BspACI CCGC 7 cut(s) 43, 116, 350, 616, 1490, 2257, 2665
BspANI GGCC 4 cut(s) 1180, 3003, 3201, 3287
BspDI ATCGAT 1 cut(s) 3177
BspFNI CGCG 4 cut(s) 45, 365, 618, 3129
BspHI TCATGA 1 cut(s) 223
BspMAI CTGCAG 3 cut(s) 661, 2104, 3213
BspMI ACCTGC 2 cut(s) 1388, 1632
BspPI GGATC 5 cut(s) 144, 1805, 2201, 2943, 3310
BspT104I TTCGAA 1 cut(s) 2557
BspT107I GGYRCC 1 cut(s) 322
BspTI CTTAAG 1 cut(s) 2324
BspTNI GGTCTC 3 cut(s) 671, 1358, 1856
BsrDI GCAATG 2 cut(s) 834, 1847
BsrFI RCCGGY 1 cut(s) 1112
BsrI ACTGG 7 cut(s) 78, 271, 413, 1204, 1220, 1419, 2973
BssAI RCCGGY 1 cut(s) 1112
BssECI CCNNGG 7 cut(s) 110, 111, 773, 2013, 2516, 2688, 3271
BssSI CACGAG 1 cut(s) 3099
BssT1I CCWWGG 2 cut(s) 2516, 2688
Bst2BI CACGAG 1 cut(s) 3099
Bst2UI CCWGG 2 cut(s) 774, 3203
Bst6I CTCTTC 4 cut(s) 1104, 1152, 1854, 3296
BstAFI CTTAAG 1 cut(s) 2324
BstAPI GCANNNNNTGC 1 cut(s) 1853
BstBAI YACGTR 1 cut(s) 2062
BstBI TTCGAA 1 cut(s) 2557
BstC8I GCNNGC 2 cut(s) 1182, 1854
BstEII GGTNACC 1 cut(s) 1544
BstF5I GGATG 9 cut(s) 505, 613, 783, 898, 1921, 1943, 2023, 2698, 3005
BstFNI CGCG 4 cut(s) 45, 365, 618, 3129
BstHHI GCGC 1 cut(s) 367
BstMWI GCNNNNNNNGC 7 cut(s) 58, 566, 656, 979, 1169, 1853, 1960
BstNI CCWGG 2 cut(s) 774, 3203
BstNSI RCATGY 2 cut(s) 1412, 1445
BstPI GGTNACC 1 cut(s) 1544
BstSCI CCNGG 6 cut(s) 109, 110, 233, 772, 3201, 3270
BstSFI CTRYAG 4 cut(s) 474, 657, 2100, 3209
BstSLI GKGCMC 3 cut(s) 325, 2451, 3005
BstUI CGCG 4 cut(s) 45, 365, 618, 3129
BstV1I GCAGC 8 cut(s) 544, 643, 840, 1245, 1724, 1938, 2026, 2743
BstV2I GAAGAC 1 cut(s) 2334
BstX2I RGATCY 5 cut(s) 136, 1142, 1797, 2193, 3315
BstYI RGATCY 5 cut(s) 136, 1142, 1797, 2193, 3315
Bsu15I ATCGAT 1 cut(s) 3177
BsuRI GGCC 4 cut(s) 1180, 3003, 3201, 3287
BsuTUI ATCGAT 1 cut(s) 3177
BtgZI GCGATG 3 cut(s) 1688, 2659, 3042
BtrI CACGTC 1 cut(s) 2404
BtsCI GGATG 9 cut(s) 505, 613, 783, 898, 1921, 1943, 2023, 2698, 3005
BtsI GCAGTG 2 cut(s) 1017, 2877
BtsIMutI CAGTG 8 cut(s) 157, 1017, 1213, 1273, 1426, 1737, 2877, 2966
BveI ACCTGC 2 cut(s) 1388, 1632
Cac8I GCNNGC 2 cut(s) 1182, 1854
CciI TCATGA 1 cut(s) 223
CfoI GCGC 1 cut(s) 367
Cfr10I RCCGGY 1 cut(s) 1112
Cfr13I GGNCC 5 cut(s) 1487, 2236, 3001, 3002, 3058
Cfr9I CCCGGG 1 cut(s) 110
ClaI ATCGAT 1 cut(s) 3177
Csp6I GTAC 1 cut(s) 2059
CspAI ACCGGT 1 cut(s) 1112
CspCI CAANNNNNGTGG 2 cut(s) 2213, 2248
CviAII CATG 8 cut(s) 224, 799, 1341, 1389, 1409, 1442, 2261, 2713
CviQI GTAC 1 cut(s) 2059
DraI TTTAAA 1 cut(s) 589
DriI GACNNNNNGTC 2 cut(s) 522, 703
Eam1104I CTCTTC 4 cut(s) 1104, 1152, 1854, 3296
Eam1105I GACNNNNNGTC 2 cut(s) 522, 703
EarI CTCTTC 4 cut(s) 1104, 1152, 1854, 3296
Ecl136II GAGCTC 1 cut(s) 1327
Eco130I CCWWGG 2 cut(s) 2516, 2688
Eco147I AGGCCT 2 cut(s) 1180, 3287
Eco24I GRGCYC 2 cut(s) 1329, 3005
Eco31I GGTCTC 3 cut(s) 671, 1358, 1856
Eco32I GATATC 1 cut(s) 819
Eco47I GGWCC 3 cut(s) 1487, 2236, 3058
Eco53kI GAGCTC 1 cut(s) 1327
Eco57I CTGAAG 3 cut(s) 1728, 1878, 2328
Eco88I CYCGRG 4 cut(s) 110, 1185, 3009, 3165
Eco91I GGTNACC 1 cut(s) 1544
EcoICRI GAGCTC 1 cut(s) 1327
EcoO109I RGGNCCY 3 cut(s) 2236, 3001, 3058
EcoO65I GGTNACC 1 cut(s) 1544
EcoRII CCWGG 2 cut(s) 772, 3201
EcoRV GATATC 1 cut(s) 819
EcoT14I CCWWGG 2 cut(s) 2516, 2688
EcoT22I ATGCAT 3 cut(s) 1390, 1789, 2383
EcoT38I GRGCYC 2 cut(s) 1329, 3005
ErhI CCWWGG 2 cut(s) 2516, 2688
FaeI CATG 8 cut(s) 227, 802, 1344, 1392, 1412, 1445, 2264, 2716
FalI AAGNNNNNCTT 6 cut(s) 1305, 1337, 2417, 2449, 2672, 2704
FaqI GGGAC 3 cut(s) 230, 1500, 2249
FatI CATG 8 cut(s) 223, 798, 1340, 1388, 1408, 1441, 2260, 2712
FauI CCCGC 1 cut(s) 2672
FauNDI CATATG 1 cut(s) 628
FblI GTMKAC 1 cut(s) 2540
FokI GGATG 9 cut(s) 512, 620, 790, 905, 1908, 1930, 2030, 2705, 2992
FriOI GRGCYC 2 cut(s) 1329, 3005
FspBI CTAG 9 cut(s) 140, 725, 843, 866, 995, 2115, 2517, 2859, 3230
GlaI GCGC 1 cut(s) 366
GsaI CCCAGC 1 cut(s) 2481
GsuI CTGGAG 1 cut(s) 1718
HaeIII GGCC 4 cut(s) 1180, 3003, 3201, 3287
HapII CCGG 5 cut(s) 111, 234, 1113, 2784, 3271
HhaI GCGC 1 cut(s) 367
Hin1II CATG 8 cut(s) 227, 802, 1344, 1392, 1412, 1445, 2264, 2716
Hin6I GCGC 1 cut(s) 365
HinP1I GCGC 1 cut(s) 365
HincII GTYRAC 4 cut(s) 1338, 2308, 2374, 2903
HindII GTYRAC 4 cut(s) 1338, 2308, 2374, 2903
HpaII CCGG 5 cut(s) 111, 234, 1113, 2784, 3271
HphI GGTGA 8 cut(s) 281, 1127, 1202, 1214, 2238, 2773, 3260, 3287
Hpy166II GTNNAC 7 cut(s) 1118, 1338, 2308, 2374, 2541, 2781, 2903
Hpy8I GTNNAC 7 cut(s) 1118, 1338, 2308, 2374, 2541, 2781, 2903
HpyCH4IV ACGT 3 cut(s) 730, 2061, 2403
HpyF10VI GCNNNNNNNGC 7 cut(s) 58, 566, 656, 979, 1169, 1853, 1960
HpySE526I ACGT 3 cut(s) 730, 2061, 2403
Hsp92II CATG 8 cut(s) 227, 802, 1344, 1392, 1412, 1445, 2264, 2716
HspAI GCGC 1 cut(s) 365
KflI GGGWCCC 1 cut(s) 2236
LmnI GCTCC 4 cut(s) 22, 1168, 2641, 3233
Lsp1109I GCAGC 8 cut(s) 544, 643, 840, 1245, 1724, 1938, 2026, 2743
LweI GCATC 6 cut(s) 544, 883, 1710, 1930, 2014, 2154
MaeI CTAG 9 cut(s) 140, 725, 843, 866, 995, 2115, 2517, 2859, 3230
MaeII ACGT 3 cut(s) 730, 2061, 2403
MaeIII GTNAC 9 cut(s) 118, 283, 1190, 1414, 1500, 1544, 1663, 2944, 3266
MfeI CAATTG 1 cut(s) 169
MflI RGATCY 5 cut(s) 136, 1142, 1797, 2193, 3315
MhlI GDGCHC 6 cut(s) 168, 325, 772, 1329, 2451, 3005
MluI ACGCGT 1 cut(s) 3127
MlyI GAGTC 8 cut(s) 305, 398, 763, 1046, 1103, 2150, 3157, 3241
MmeI TCCRAC 5 cut(s) 771, 1006, 1147, 2591, 2604
Mph1103I ATGCAT 3 cut(s) 1390, 1789, 2383
MseI TTAA 8 cut(s) 86, 447, 588, 1011, 1457, 2325, 2550, 3185
MslI CAYNNNNRTG 3 cut(s) 1236, 3156, 3273
MspA1I CMGCKG 1 cut(s) 2257
MspCI CTTAAG 1 cut(s) 2324
MspI CCGG 5 cut(s) 111, 234, 1113, 2784, 3271
MspR9I CCNGG 6 cut(s) 111, 112, 235, 774, 3203, 3272
MunI CAATTG 1 cut(s) 169
Mva1269I GAATGC 5 cut(s) 195, 865, 1139, 1519, 1789
MvaI CCWGG 2 cut(s) 774, 3203
MvnI CGCG 4 cut(s) 45, 365, 618, 3129
MwoI GCNNNNNNNGC 7 cut(s) 58, 566, 656, 979, 1169, 1853, 1960
NciI CCSGG 4 cut(s) 111, 112, 235, 3272
NdeI CATATG 1 cut(s) 628
NlaIII CATG 8 cut(s) 227, 802, 1344, 1392, 1412, 1445, 2264, 2716
NmuCI GTSAC 4 cut(s) 1190, 1663, 2944, 3266
NsiI ATGCAT 3 cut(s) 1390, 1789, 2383
NspI RCATGY 2 cut(s) 1412, 1445
NspV TTCGAA 1 cut(s) 2557
OliI CACNNNNGTG 1 cut(s) 3273
PaeR7I CTCGAG 1 cut(s) 3165
PagI TCATGA 1 cut(s) 223
PaqCI CACCTGC 2 cut(s) 1388, 1632
PceI AGGCCT 2 cut(s) 1180, 3287
PctI GAATGC 5 cut(s) 195, 865, 1139, 1519, 1789
PflFI GACNNNGTC 1 cut(s) 146
PinAI ACCGGT 1 cut(s) 1112
PleI GAGTC 8 cut(s) 304, 398, 762, 1045, 1102, 2149, 3157, 3241
PpsI GAGTC 8 cut(s) 304, 398, 762, 1045, 1102, 2149, 3157, 3241
Ppu21I YACGTR 1 cut(s) 2062
PpuMI RGGWCCY 2 cut(s) 2236, 3058
PshBI ATTAAT 1 cut(s) 2550
Psp124BI GAGCTC 1 cut(s) 1329
Psp5II RGGWCCY 2 cut(s) 2236, 3058
Psp6I CCWGG 2 cut(s) 772, 3201
PspEI GGTNACC 1 cut(s) 1544
PspFI CCCAGC 1 cut(s) 2477
PspGI CCWGG 2 cut(s) 772, 3201
PspOMI GGGCCC 1 cut(s) 3001
PspPI GGNCC 5 cut(s) 1487, 2236, 3001, 3002, 3058
PspPPI RGGWCCY 2 cut(s) 2236, 3058
PsrI GAACNNNNNNTAC 2 cut(s) 3114, 3146
PstI CTGCAG 3 cut(s) 661, 2104, 3213
PsuI RGATCY 5 cut(s) 136, 1142, 1797, 2193, 3315
PsyI GACNNNGTC 1 cut(s) 146
RsaI GTAC 1 cut(s) 2060
RsaNI GTAC 1 cut(s) 2059
RseI CAYNNNNRTG 3 cut(s) 1236, 3156, 3273
SacI GAGCTC 1 cut(s) 1329
SaqAI TTAA 8 cut(s) 86, 447, 588, 1011, 1457, 2325, 2550, 3185
Sau96I GGNCC 5 cut(s) 1487, 2236, 3001, 3002, 3058
SchI GAGTC 8 cut(s) 305, 398, 763, 1046, 1103, 2150, 3157, 3241
ScrFI CCNGG 6 cut(s) 111, 112, 235, 774, 3203, 3272
SduI GDGCHC 6 cut(s) 168, 325, 772, 1329, 2451, 3005
SfaNI GCATC 6 cut(s) 544, 883, 1710, 1930, 2014, 2154
SfcI CTRYAG 4 cut(s) 474, 657, 2100, 3209
Sfr274I CTCGAG 1 cut(s) 3165
SfuI TTCGAA 1 cut(s) 2557
SgrAI CRCCGGYG 1 cut(s) 1112
SinI GGWCC 3 cut(s) 1487, 2236, 3058
SlaI CTCGAG 1 cut(s) 3165
SmaI CCCGGG 1 cut(s) 112
SmiMI CAYNNNNRTG 3 cut(s) 1236, 3156, 3273
SmlI CTYRAG 6 cut(s) 1138, 1322, 2051, 2324, 3062, 3165
SmoI CTYRAG 6 cut(s) 1138, 1322, 2051, 2324, 3062, 3165
SseBI AGGCCT 2 cut(s) 1180, 3287
SsiI CCGC 7 cut(s) 43, 116, 350, 616, 1490, 2257, 2665
SspI AATATT 1 cut(s) 3261
SspMI CTAG 9 cut(s) 140, 725, 843, 866, 995, 2115, 2517, 2859, 3230
SstI GAGCTC 1 cut(s) 1329
StuI AGGCCT 2 cut(s) 1180, 3287
StyD4I CCNGG 6 cut(s) 109, 110, 233, 772, 3201, 3270
StyI CCWWGG 2 cut(s) 2516, 2688
TaiI ACGT 3 cut(s) 733, 2064, 2406
TaqII GACCGA 2 cut(s) 2027, 2781
TauI GCSGC 2 cut(s) 45, 2260
Tru1I TTAA 8 cut(s) 86, 447, 588, 1011, 1457, 2325, 2550, 3185
Tru9I TTAA 8 cut(s) 86, 447, 588, 1011, 1457, 2325, 2550, 3185
TscAI CASTG 8 cut(s) 157, 1024, 1220, 1273, 1426, 1744, 2877, 2973
TseFI GTSAC 4 cut(s) 1190, 1663, 2944, 3266
TseI GCWGC 8 cut(s) 557, 656, 853, 1258, 1712, 1951, 2039, 2756
Tsp45I GTSAC 4 cut(s) 1190, 1663, 2944, 3266
TspDTI ATGAA 5 cut(s) 263, 645, 1361, 1946, 2701
TspGWI ACGGA 5 cut(s) 1060, 1376, 1391, 2558, 2972
TspMI CCCGGG 1 cut(s) 110
TspRI CASTG 8 cut(s) 157, 1024, 1220, 1273, 1426, 1744, 2877, 2973
Tth111I GACNNNGTC 1 cut(s) 146
Vha464I CTTAAG 1 cut(s) 2324
VpaK11BI GGWCC 3 cut(s) 1487, 2236, 3058
VspI ATTAAT 1 cut(s) 2550
XapI RAATTY 2 cut(s) 941, 1431
XbaI TCTAGA 1 cut(s) 139
XceI RCATGY 2 cut(s) 1412, 1445
XcmI CCANNNNNNNNNTGG 1 cut(s) 1220
XhoI CTCGAG 1 cut(s) 3165
XmaI CCCGGG 1 cut(s) 110
XmaJI CCTAGG 1 cut(s) 2516
XmiI GTMKAC 1 cut(s) 2540
XspI CTAG 9 cut(s) 140, 725, 843, 866, 995, 2115, 2517, 2859, 3230
Zsp2I ATGCAT 3 cut(s) 1390, 1789, 2383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.