Rh1BG062300

Plant family of unknown function (DUF810)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0005738
Physical Location & Seq
Reverse (-)
9202430 .. 9219186
16757 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG062300.1

Sequence Viewer

Length: 3234 bp
ATGCCTCCCGGGGCGGTTACGCTGGACGATGTCGATCTTGACCAAGTCAGTGTTGATTATGTGCTCAATTGTGCTAAGAAAGGTGGAATGCTTGAACTGTCTGAGGCTATTAGAGACTATCATGACCATACCGGGTTGCCTCAAATGAATAATTCTGGTTCTGCTGGTGAATACTTTTTGGTTACGAATCCTGAGTCTTACGGTTCTCCTCCAAAGAGGGCACCACCACCTGTTCCAGACTACACACCGCCTCCTGTTCTCGCGCCACCTCCTGTAATCACACCATCTATTCCAGACCTTGACTCATCTCCAGTCGCATCGAATATATCACAATCTGAATCTTTTAACTCCACACAAGTTCGAGAACTTACTGTAGATGATATTGAAGATTTTGAGGATGATGATTTAGATGAGACTGACAGTCTCAGGATTTCAAGAAGGATTCGTAATGATGCTGCTGATCTTGCTCTTGGACTGCCTTCTTTTAAAACAGGTATTATAGAAGATGATCTCCGCGAGACTGCATATGAAATCCTCTTGGCGTGTGCTGGCGCTGCAGGGGGTCTCATTGTGCCATCAAAAGAGAAAAAGAAAGACAAAAGGTCAAAGCTGATGAGGAAACTAGGACGTAGTAGAAGTGAAAATGTTGTGAGTCAGTCTCAACGAGCACCTGGGATGGTTGGTTTGTTGGAAGCCATGCGTGTCCAGATGGAGATATCTGAGGCAATGGACATCAGAACTAGACAAGGGCTGCTGAATGCACTAGCAGGAAAAGTGGGAAAAAGAATGGATGCCCTACTAGTTCCTTTGGAACTTTTATGTTGTATTTCACGGTCAGAATTTTCTGACAAGAAGGCTTATATACGATGGCAGAAAAGGCAGTTGAATATACTAGAGGAGGGGCTTCTTAATCACACTGCTGTTGGATTTGGGGAGTCTGGACGGAAGGCGAGTGAGTTGAGGATTCTTTTAGCAAAGATTGAAGAATCTGAGTTTCTTCCACCCTCCACCGGTGAACTCCAACGAACAGAATGCTTGAGATCTCTTGGAGAAATTACTGCTCCACTTGCTGAGAGGCCTGCTCGGGGTGACTTGACTGGTGAAGTATGCCACTGGGCAGATGGTTATCATTTGAATGTAAGACTATATGAGAAGCTGCTTGTCAGTGTCTTCGATATGTTAGATGAGGGAAAGCTAACTGAGGAAGTGGAAGAAATACTTGAGCTCTTGAAGTCAACATGGCGTGTTTTAGGTATCACGGAGACCATTCATTACACCTGCTATGCATGGGTCTTATTCCGTCAGCATGTTGTTACCAGTGAGCAAGGAATTTTACAACATGCCATTGAACAGTTAAAGAAAATACCATTGAAGGAACAAAGGGGACCGCAAGAGAGGTTACACTTGAAAAGTTTGCATTCCAGAGTTGAAGGCAAACAGGGTTACCAAGACTTATCTTTCTTACAGTCCTTTTTGTCTCCCATTCAGAAATGGGCTGATAAGCAACTTGGAGACTACCACCTGCACTTCGCTGAGGTGTCAGTTATGATGGAGAATATAGTGACAGTTGCGATGATTACTCGGAGGCTTCTTCTGGAGGAACCTGAAGCAGCAACGATGCAATCTACATCTGCCACTGATCGAGATCAAATAGAATCTTATATATCATCTTCTATCAAGAATGCATTTACAAGGATCTTGCAGTCTCTTGAAAAATCAGACACCAAGCACGAACATCATTTGGCATTGCTTGCTGAAGAGACCAAGAAACTTTTGAAAAAGGACACGGCCTTGTTTATGCCAATTTTATCTCAGAGGCATCCACAAGCAATTGCTGTCTCATCCTCGCTTCTTCATAGGCTTTATGGCAACAAGTTGAAACCTTTTCTTGGTGTTGCTGAGCATCTGACCGAGGATGTGGTATCTGTATTTCCTGCTGCCGACGACCTTGAGCAGTACATGATGGAACTTATTTTGTCATCTTGTGGAGAGGAAACTGCAGAGATATACTCTAGGAAAATAGTTCCTTACCAGATTGAGTCTATATCTGGAACATTAGTGATGCGTTGGGTCAATTCACAACTTGCGAGGATCTTAGGTTGGGTTGAACGGGCTATTCAACAAGAGAGGTGGGACCCAATATCACCTCAACAGCGGCATGGGAGTTCAATAGTTGAAGTATTTAGAATTGTAGAGGAGACTGTTGACCAATTTTTTGAGCTTAAGGTTCCAATGAGGTCTTCAGAATTGAGTAGCCTGTTTCGTGGAGTTGACAATGCATTTCAAGTTTATGCAAATCACGTCATTGACAAATTGGCTACCAAGGAGGACTTGATTCCACCTGTGCCCATTCTCACACGATACAAGAAGGAAGCTGGGATAAAGGCTTTTGTAAAAAAGGAACTATTTGACCCTAGGTTGCCTGATGAGAGAAGGTCTACGGAAATTAATGTTCGAACCACTCCAACACTCTGTGTTCAGTTGAACACACTTTATTATGCAATCAATGAGTTGAATAAGTTGGAAGATGGCATTTGGGAGCGATGGACGAGGAAGAAGCCCCGCCAAAAGTTTATAAAGAAATCCTTAGATGAGAAATCTAAAAGTTTCATGCAGAAGGACACATTTGATGGGAGTAGGAAAGATATAAACGCTGCTATAGACCGAATATGCGAGTTCACCGGAACTAAAATTATCTTTTGGGATTTGAGGGAACCATTTATCAACAACTTATATAAACCAAGTGTTTCTCTTTCTAGGTTCGAGGCAGTGATTGAACCACTTGATATGGAACTTTGTCAACTATGTGATAGAATTGTGGAACCACTCAGGGATCGTATTGTGACAAGTCTCCTTCAAGCAACACTGGATGGCTTACTCCGTGTCCTATTAGATGGGGGCCCATCCCGAGTTTTCTCTTTGGGCGATGGAAAACTATTAGAAGAAGATTTAGAGGTCCTCAAGGAGTTTTTTATCTCTGGTGGAGATGGGCTTCCACGAGGAGTGGTCGAAAATCAGGTATCACGCGTTCGGCTTGTGGTAAAGTTGCACAGTTATGAGACTCGAGAACTGATCGACGACTTAAAATCTTCAAGTGGCCTGGAACTGCAGGGTGGTAGAAGCAAACTAGGAGCTGATTCTAAGACTCTATTGCGAATATTATGTCACCGGGGTGATTCAGAGGCCTCCCAATTTGTCAAGAAACAATACAAAATCCCGAAGTCCTCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009987 GO:0010118 GO:0016020 GO:0030054 GO:0044424 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF810

Protein Analysis

1077

Amino Acids

121.57

Weight (kDa)

5.73

Isoelectric Point (pI)

51.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_PATROL1 PF25761 685 - 1075 1.1e-125 PATROL1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2576
AarI CACCTGC 2 cut(s) 1286, 1530
Acc36I ACCTGC 2 cut(s) 1286, 1530
AccB1I GGYRCC 1 cut(s) 220
AccI GTMKAC 1 cut(s) 2438
AccII CGCG 3 cut(s) 263, 516, 3027
AciI CCGC 6 cut(s) 14, 248, 514, 1388, 2155, 2563
AclWI GGATC 3 cut(s) 1703, 2099, 2841
AcsI RAATTY 2 cut(s) 839, 1329
AcuI CTGAAG 3 cut(s) 1626, 1776, 2226
AdeI CACNNNGTG 1 cut(s) 2474
AfaI GTAC 1 cut(s) 1958
AfiI CCNNNNNNNGG 3 cut(s) 1010, 1085, 1889
AflII CTTAAG 1 cut(s) 2222
AflIII ACRYGT 1 cut(s) 3025
AgeI ACCGGT 1 cut(s) 1010
AhdI GACNNNNNGTC 2 cut(s) 420, 601
AhlI ACTAGT 1 cut(s) 799
AjiI CACGTC 1 cut(s) 2302
AjnI CCWGG 2 cut(s) 670, 3099
AjuI GAANNNNNNNTTGG 2 cut(s) 2224, 2256
AleI CACNNNNGTG 1 cut(s) 3171
AluBI AGCT 7 cut(s) 610, 1156, 1195, 1225, 2221, 2375, 3134
AluI AGCT 7 cut(s) 610, 1156, 1195, 1225, 2221, 2375, 3134
Alw21I GWGCWC 3 cut(s) 66, 670, 1227
AlwI GGATC 3 cut(s) 1703, 2099, 2841
Ama87I CYCGRG 4 cut(s) 8, 1083, 2907, 3063
AoxI GGCC 5 cut(s) 1076, 1788, 2899, 3097, 3183
ApaI GGGCCC 1 cut(s) 2903
ApeKI GCWGC 7 cut(s) 455, 554, 751, 1156, 1610, 1937, 2654
ApoI RAATTY 2 cut(s) 839, 1329
ArsI GACNNNNNNTTYG 6 cut(s) 179, 211, 2198, 2230, 3148, 3180
AseI ATTAAT 1 cut(s) 2448
AsiGI ACCGGT 1 cut(s) 1010
AspA2I CCTAGG 1 cut(s) 2414
AspLEI GCGC 2 cut(s) 265, 554
AspS9I GGNCC 5 cut(s) 1385, 2134, 2899, 2900, 2956
AsuC2I CCSGG 4 cut(s) 9, 10, 133, 3170
AsuHPI GGTGA 8 cut(s) 179, 1025, 1100, 1112, 2136, 2671, 3158, 3185
AsuII TTCGAA 1 cut(s) 2455
AvaI CYCGRG 4 cut(s) 8, 1083, 2907, 3063
AvaII GGWCC 3 cut(s) 1385, 2134, 2956
AvrII CCTAGG 1 cut(s) 2414
BaeGI GKGCMC 3 cut(s) 223, 2349, 2903
BanI GGYRCC 1 cut(s) 220
BanII GRGCYC 2 cut(s) 1227, 2903
BauI CACGAG 1 cut(s) 2997
BbsI GAAGAC 2 cut(s) 1162, 2232
Bbv12I GWGCWC 3 cut(s) 66, 670, 1227
BbvCI CCTCAGC 1 cut(s) 1533
BbvI GCAGC 7 cut(s) 442, 541, 738, 1143, 1622, 1924, 2641
BceAI ACGGC 1 cut(s) 1803
BcgI CGANNNNNNTGC 2 cut(s) 1014, 1048
BciT130I CCWGG 2 cut(s) 672, 3101
BcnI CCSGG 4 cut(s) 9, 10, 133, 3170
BcuI ACTAGT 1 cut(s) 799
BfaI CTAG 9 cut(s) 623, 741, 764, 800, 893, 2013, 2415, 2757, 3128
BfmI CTRYAG 5 cut(s) 372, 555, 1998, 2658, 3107
BfoI RGCGCY 1 cut(s) 555
BfrI CTTAAG 1 cut(s) 2222
BfuAI ACCTGC 2 cut(s) 1286, 1530
BglII AGATCT 1 cut(s) 1040
BisI GCNGC 8 cut(s) 456, 555, 752, 1157, 1611, 1938, 2156, 2655
BlnI CCTAGG 1 cut(s) 2414
BlpI GCTNAGC 1 cut(s) 1899
BlsI GCNGC 8 cut(s) 457, 556, 753, 1158, 1612, 1939, 2157, 2656
Bme1390I CCNGG 6 cut(s) 9, 10, 133, 672, 3101, 3170
Bme18I GGWCC 3 cut(s) 1385, 2134, 2956
BmeRI GACNNNNNGTC 2 cut(s) 420, 601
BmeT110I CYCGRG 4 cut(s) 8, 1083, 2907, 3063
BmgBI CACGTC 1 cut(s) 2302
BmgT120I GGNCC 5 cut(s) 1385, 2134, 2899, 2900, 2956
BmrFI CCNGG 6 cut(s) 9, 10, 133, 672, 3101, 3170
BmrI ACTGGG 1 cut(s) 1123
BmsI GCATC 7 cut(s) 326, 442, 781, 1608, 1828, 1912, 2052
BmuI ACTGGG 1 cut(s) 1123
BpiI GAAGAC 2 cut(s) 1162, 2232
BplI GAGNNNNNCTC 6 cut(s) 643, 675, 1066, 1098, 1994, 2026
BpmI CTGGAG 2 cut(s) 294, 1616
Bpu10I CCTNAGC 1 cut(s) 1533
Bpu1102I GCTNAGC 1 cut(s) 1899
Bpu14I TTCGAA 1 cut(s) 2455
BpuEI CTTGAG 4 cut(s) 1057, 1241, 1970, 2945
BpuMI CCSGG 4 cut(s) 9, 10, 133, 3170
BsaBI GATNNNNATC 3 cut(s) 33, 1125, 1644
BsaI GGTCTC 3 cut(s) 569, 1256, 1754
BsaJI CCNNGG 7 cut(s) 8, 9, 671, 1911, 2322, 2414, 3169
BsaWI WCCGGW 2 cut(s) 1010, 2681
BsaXI ACNNNNNCTCC 2 cut(s) 235, 265
Bsc4I CCNNNNNNNGG 3 cut(s) 1010, 1085, 1889
Bse118I RCCGGY 1 cut(s) 1010
Bse1I ACTGG 5 cut(s) 311, 1102, 1118, 1317, 2871
Bse3DI GCAATG 2 cut(s) 732, 1745
Bse8I GATNNNNATC 3 cut(s) 33, 1125, 1644
BseBI CCWGG 2 cut(s) 672, 3101
BseDI CCNNGG 7 cut(s) 8, 9, 671, 1911, 2322, 2414, 3169
BseGI GGATG 8 cut(s) 403, 681, 796, 1819, 1841, 1921, 2875, 2903
BseJI GATNNNNATC 3 cut(s) 33, 1125, 1644
BseLI CCNNNNNNNGG 3 cut(s) 1010, 1085, 1889
BseMI GCAATG 2 cut(s) 732, 1745
BseNI ACTGG 5 cut(s) 311, 1102, 1118, 1317, 2871
BseRI GAGGAG 4 cut(s) 198, 911, 2210, 3015
BseSI GKGCMC 3 cut(s) 223, 2349, 2903
BseXI GCAGC 7 cut(s) 442, 541, 738, 1143, 1622, 1924, 2641
BseYI CCCAGC 1 cut(s) 2375
BsgI GTGCAG 1 cut(s) 1508
Bsh1236I CGCG 3 cut(s) 263, 516, 3027
BshFI GGCC 5 cut(s) 1078, 1790, 2901, 3099, 3185
BshNI GGYRCC 1 cut(s) 220
BshTI ACCGGT 1 cut(s) 1010
BsiHKAI GWGCWC 3 cut(s) 66, 670, 1227
BsiHKCI CYCGRG 4 cut(s) 8, 1083, 2907, 3063
BsiSI CCGG 5 cut(s) 9, 132, 1011, 2682, 3169
BslFI GGGAC 2 cut(s) 1398, 2147
BslI CCNNNNNNNGG 3 cut(s) 1010, 1085, 1889
BsmFI GGGAC 2 cut(s) 1398, 2147
BsmI GAATGC 5 cut(s) 93, 763, 1037, 1417, 1687
BsnI GGCC 5 cut(s) 1078, 1790, 2901, 3099, 3185
Bso31I GGTCTC 3 cut(s) 569, 1256, 1754
BsoBI CYCGRG 4 cut(s) 8, 1083, 2907, 3063
Bsp119I TTCGAA 1 cut(s) 2455
Bsp120I GGGCCC 1 cut(s) 2899
Bsp1286I GDGCHC 6 cut(s) 66, 223, 670, 1227, 2349, 2903
Bsp1720I GCTNAGC 1 cut(s) 1899
BspACI CCGC 6 cut(s) 14, 248, 514, 1388, 2155, 2563
BspANI GGCC 5 cut(s) 1078, 1790, 2901, 3099, 3185
BspFNI CGCG 3 cut(s) 263, 516, 3027
BspHI TCATGA 1 cut(s) 121
BspMAI CTGCAG 3 cut(s) 559, 2002, 3111
BspMI ACCTGC 2 cut(s) 1286, 1530
BspPI GGATC 3 cut(s) 1703, 2099, 2841
BspT104I TTCGAA 1 cut(s) 2455
BspT107I GGYRCC 1 cut(s) 220
BspTI CTTAAG 1 cut(s) 2222
BspTNI GGTCTC 3 cut(s) 569, 1256, 1754
BsrDI GCAATG 2 cut(s) 732, 1745
BsrFI RCCGGY 1 cut(s) 1010
BsrI ACTGG 5 cut(s) 311, 1102, 1118, 1317, 2871
BssAI RCCGGY 1 cut(s) 1010
BssECI CCNNGG 7 cut(s) 8, 9, 671, 1911, 2322, 2414, 3169
BssSI CACGAG 1 cut(s) 2997
BssT1I CCWWGG 2 cut(s) 2322, 2414
Bst2BI CACGAG 1 cut(s) 2997
Bst2UI CCWGG 2 cut(s) 672, 3101
Bst6I CTCTTC 1 cut(s) 1752
BstAFI CTTAAG 1 cut(s) 2222
BstAPI GCANNNNNTGC 1 cut(s) 1751
BstBI TTCGAA 1 cut(s) 2455
BstC8I GCNNGC 3 cut(s) 550, 1080, 1752
BstEII GGTNACC 1 cut(s) 1442
BstF5I GGATG 8 cut(s) 403, 681, 796, 1819, 1841, 1921, 2875, 2903
BstFNI CGCG 3 cut(s) 263, 516, 3027
BstH2I RGCGCY 1 cut(s) 555
BstHHI GCGC 2 cut(s) 265, 554
BstMWI GCNNNNNNNGC 5 cut(s) 464, 554, 877, 1067, 1751
BstNI CCWGG 2 cut(s) 672, 3101
BstNSI RCATGY 2 cut(s) 1310, 1343
BstPI GGTNACC 1 cut(s) 1442
BstSCI CCNGG 6 cut(s) 7, 8, 131, 670, 3099, 3168
BstSFI CTRYAG 5 cut(s) 372, 555, 1998, 2658, 3107
BstSLI GKGCMC 3 cut(s) 223, 2349, 2903
BstUI CGCG 3 cut(s) 263, 516, 3027
BstV1I GCAGC 7 cut(s) 442, 541, 738, 1143, 1622, 1924, 2641
BstV2I GAAGAC 2 cut(s) 1162, 2232
BstX2I RGATCY 3 cut(s) 1040, 1695, 2091
BstYI RGATCY 3 cut(s) 1040, 1695, 2091
BsuRI GGCC 5 cut(s) 1078, 1790, 2901, 3099, 3185
BtgZI GCGATG 3 cut(s) 1586, 2557, 2940
BtrI CACGTC 1 cut(s) 2302
BtsCI GGATG 8 cut(s) 403, 681, 796, 1819, 1841, 1921, 2875, 2903
BtsI GCAGTG 2 cut(s) 915, 2775
BtsIMutI CAGTG 8 cut(s) 55, 915, 1111, 1171, 1324, 1635, 2775, 2864
BveI ACCTGC 2 cut(s) 1286, 1530
Cac8I GCNNGC 3 cut(s) 550, 1080, 1752
CciI TCATGA 1 cut(s) 121
CfoI GCGC 2 cut(s) 265, 554
Cfr10I RCCGGY 1 cut(s) 1010
Cfr13I GGNCC 5 cut(s) 1385, 2134, 2899, 2900, 2956
Cfr9I CCCGGG 1 cut(s) 8
Csp6I GTAC 1 cut(s) 1957
CspAI ACCGGT 1 cut(s) 1010
CspCI CAANNNNNGTGG 2 cut(s) 2111, 2146
CviAII CATG 9 cut(s) 122, 697, 1239, 1287, 1307, 1340, 1960, 2159, 2611
CviQI GTAC 1 cut(s) 1957
DraI TTTAAA 1 cut(s) 487
DraIII CACNNNGTG 1 cut(s) 2474
DriI GACNNNNNGTC 2 cut(s) 420, 601
Eam1104I CTCTTC 1 cut(s) 1752
Eam1105I GACNNNNNGTC 2 cut(s) 420, 601
EarI CTCTTC 1 cut(s) 1752
Ecl136II GAGCTC 1 cut(s) 1225
Eco130I CCWWGG 2 cut(s) 2322, 2414
Eco147I AGGCCT 2 cut(s) 1078, 3185
Eco24I GRGCYC 2 cut(s) 1227, 2903
Eco31I GGTCTC 3 cut(s) 569, 1256, 1754
Eco32I GATATC 1 cut(s) 717
Eco47I GGWCC 3 cut(s) 1385, 2134, 2956
Eco53kI GAGCTC 1 cut(s) 1225
Eco57I CTGAAG 3 cut(s) 1626, 1776, 2226
Eco88I CYCGRG 4 cut(s) 8, 1083, 2907, 3063
Eco91I GGTNACC 1 cut(s) 1442
EcoICRI GAGCTC 1 cut(s) 1225
EcoO109I RGGNCCY 3 cut(s) 2134, 2899, 2956
EcoO65I GGTNACC 1 cut(s) 1442
EcoRII CCWGG 2 cut(s) 670, 3099
EcoRV GATATC 1 cut(s) 717
EcoT14I CCWWGG 2 cut(s) 2322, 2414
EcoT22I ATGCAT 3 cut(s) 1288, 1687, 2281
EcoT38I GRGCYC 2 cut(s) 1227, 2903
ErhI CCWWGG 2 cut(s) 2322, 2414
FaeI CATG 9 cut(s) 125, 700, 1242, 1290, 1310, 1343, 1963, 2162, 2614
FalI AAGNNNNNCTT 6 cut(s) 1203, 1235, 2315, 2347, 2570, 2602
FaqI GGGAC 2 cut(s) 1398, 2147
FatI CATG 9 cut(s) 121, 696, 1238, 1286, 1306, 1339, 1959, 2158, 2610
FauI CCCGC 1 cut(s) 2570
FauNDI CATATG 1 cut(s) 526
FblI GTMKAC 1 cut(s) 2438
Fnu4HI GCNGC 8 cut(s) 456, 555, 752, 1157, 1611, 1938, 2156, 2655
FokI GGATG 8 cut(s) 410, 688, 803, 1806, 1828, 1928, 2882, 2890
FriOI GRGCYC 2 cut(s) 1227, 2903
Fsp4HI GCNGC 8 cut(s) 456, 555, 752, 1157, 1611, 1938, 2156, 2655
FspBI CTAG 9 cut(s) 623, 741, 764, 800, 893, 2013, 2415, 2757, 3128
GlaI GCGC 2 cut(s) 264, 553
GluI GCNGC 8 cut(s) 456, 555, 752, 1157, 1611, 1938, 2156, 2655
GsaI CCCAGC 1 cut(s) 2379
GsuI CTGGAG 2 cut(s) 294, 1616
HaeII RGCGCY 1 cut(s) 555
HaeIII GGCC 5 cut(s) 1078, 1790, 2901, 3099, 3185
HapII CCGG 5 cut(s) 9, 132, 1011, 2682, 3169
HhaI GCGC 2 cut(s) 265, 554
Hin1II CATG 9 cut(s) 125, 700, 1242, 1290, 1310, 1343, 1963, 2162, 2614
Hin6I GCGC 2 cut(s) 263, 552
HinP1I GCGC 2 cut(s) 263, 552
HincII GTYRAC 4 cut(s) 1236, 2206, 2272, 2801
HindII GTYRAC 4 cut(s) 1236, 2206, 2272, 2801
HpaII CCGG 5 cut(s) 9, 132, 1011, 2682, 3169
HphI GGTGA 8 cut(s) 179, 1025, 1100, 1112, 2136, 2671, 3158, 3185
Hpy166II GTNNAC 7 cut(s) 1016, 1236, 2206, 2272, 2439, 2679, 2801
Hpy8I GTNNAC 7 cut(s) 1016, 1236, 2206, 2272, 2439, 2679, 2801
Hpy99I CGWCG 2 cut(s) 1946, 3080
HpyCH4IV ACGT 2 cut(s) 628, 2301
HpyF10VI GCNNNNNNNGC 5 cut(s) 464, 554, 877, 1067, 1751
HpySE526I ACGT 2 cut(s) 628, 2301
Hsp92II CATG 9 cut(s) 125, 700, 1242, 1290, 1310, 1343, 1963, 2162, 2614
HspAI GCGC 2 cut(s) 263, 552
KflI GGGWCCC 1 cut(s) 2134
LmnI GCTCC 3 cut(s) 1066, 2539, 3131
Lsp1109I GCAGC 7 cut(s) 442, 541, 738, 1143, 1622, 1924, 2641
LweI GCATC 7 cut(s) 326, 442, 781, 1608, 1828, 1912, 2052
MaeI CTAG 9 cut(s) 623, 741, 764, 800, 893, 2013, 2415, 2757, 3128
MaeII ACGT 2 cut(s) 628, 2301
MaeIII GTNAC 9 cut(s) 16, 181, 1088, 1312, 1398, 1442, 1561, 2842, 3164
MfeI CAATTG 2 cut(s) 67, 1830
MflI RGATCY 3 cut(s) 1040, 1695, 2091
MhlI GDGCHC 6 cut(s) 66, 223, 670, 1227, 2349, 2903
MluI ACGCGT 1 cut(s) 3025
MlyI GAGTC 7 cut(s) 203, 296, 661, 944, 2048, 3055, 3139
MmeI TCCRAC 5 cut(s) 669, 904, 1045, 2489, 2502
Mph1103I ATGCAT 3 cut(s) 1288, 1687, 2281
MseI TTAA 7 cut(s) 345, 486, 909, 1355, 2223, 2448, 3083
MslI CAYNNNNRTG 3 cut(s) 1134, 3054, 3171
MspA1I CMGCKG 1 cut(s) 2155
MspCI CTTAAG 1 cut(s) 2222
MspI CCGG 5 cut(s) 9, 132, 1011, 2682, 3169
MspR9I CCNGG 6 cut(s) 9, 10, 133, 672, 3101, 3170
MunI CAATTG 2 cut(s) 67, 1830
Mva1269I GAATGC 5 cut(s) 93, 763, 1037, 1417, 1687
MvaI CCWGG 2 cut(s) 672, 3101
MvnI CGCG 3 cut(s) 263, 516, 3027
MwoI GCNNNNNNNGC 5 cut(s) 464, 554, 877, 1067, 1751
NciI CCSGG 4 cut(s) 9, 10, 133, 3170
NdeI CATATG 1 cut(s) 526
NlaIII CATG 9 cut(s) 125, 700, 1242, 1290, 1310, 1343, 1963, 2162, 2614
NmuCI GTSAC 4 cut(s) 1088, 1561, 2842, 3164
NsiI ATGCAT 3 cut(s) 1288, 1687, 2281
NspI RCATGY 2 cut(s) 1310, 1343
NspV TTCGAA 1 cut(s) 2455
OliI CACNNNNGTG 1 cut(s) 3171
PaeR7I CTCGAG 1 cut(s) 3063
PagI TCATGA 1 cut(s) 121
PaqCI CACCTGC 2 cut(s) 1286, 1530
PceI AGGCCT 2 cut(s) 1078, 3185
PctI GAATGC 5 cut(s) 93, 763, 1037, 1417, 1687
PfeI GAWTC 9 cut(s) 187, 338, 442, 964, 986, 1655, 2335, 3137, 3176
PflFI GACNNNGTC 2 cut(s) 29, 44
PinAI ACCGGT 1 cut(s) 1010
PkrI GCNGC 8 cut(s) 457, 556, 753, 1158, 1612, 1939, 2157, 2656
PleI GAGTC 7 cut(s) 202, 296, 660, 943, 2047, 3055, 3139
PpsI GAGTC 7 cut(s) 202, 296, 660, 943, 2047, 3055, 3139
PpuMI RGGWCCY 2 cut(s) 2134, 2956
PshBI ATTAAT 1 cut(s) 2448
PsiI TTATAA 1 cut(s) 2576
Psp124BI GAGCTC 1 cut(s) 1227
Psp5II RGGWCCY 2 cut(s) 2134, 2956
Psp6I CCWGG 2 cut(s) 670, 3099
PspEI GGTNACC 1 cut(s) 1442
PspFI CCCAGC 1 cut(s) 2375
PspGI CCWGG 2 cut(s) 670, 3099
PspOMI GGGCCC 1 cut(s) 2899
PspPI GGNCC 5 cut(s) 1385, 2134, 2899, 2900, 2956
PspPPI RGGWCCY 2 cut(s) 2134, 2956
PsrI GAACNNNNNNTAC 2 cut(s) 3012, 3044
PstI CTGCAG 3 cut(s) 559, 2002, 3111
PsuI RGATCY 3 cut(s) 1040, 1695, 2091
PsyI GACNNNGTC 2 cut(s) 29, 44
RsaI GTAC 1 cut(s) 1958
RsaNI GTAC 1 cut(s) 1957
RseI CAYNNNNRTG 3 cut(s) 1134, 3054, 3171
SacI GAGCTC 1 cut(s) 1227
SaqAI TTAA 7 cut(s) 345, 486, 909, 1355, 2223, 2448, 3083
SatI GCNGC 8 cut(s) 456, 555, 752, 1157, 1611, 1938, 2156, 2655
Sau96I GGNCC 5 cut(s) 1385, 2134, 2899, 2900, 2956
SchI GAGTC 7 cut(s) 203, 296, 661, 944, 2048, 3055, 3139
ScrFI CCNGG 6 cut(s) 9, 10, 133, 672, 3101, 3170
SduI GDGCHC 6 cut(s) 66, 223, 670, 1227, 2349, 2903
SfaNI GCATC 7 cut(s) 326, 442, 781, 1608, 1828, 1912, 2052
SfcI CTRYAG 5 cut(s) 372, 555, 1998, 2658, 3107
Sfr274I CTCGAG 1 cut(s) 3063
SfuI TTCGAA 1 cut(s) 2455
SgrAI CRCCGGYG 1 cut(s) 1010
SinI GGWCC 3 cut(s) 1385, 2134, 2956
SlaI CTCGAG 1 cut(s) 3063
SmaI CCCGGG 1 cut(s) 10
SmiMI CAYNNNNRTG 3 cut(s) 1134, 3054, 3171
SmlI CTYRAG 6 cut(s) 1036, 1220, 1949, 2222, 2960, 3063
SmoI CTYRAG 6 cut(s) 1036, 1220, 1949, 2222, 2960, 3063
SpeI ACTAGT 1 cut(s) 799
SseBI AGGCCT 2 cut(s) 1078, 3185
SsiI CCGC 6 cut(s) 14, 248, 514, 1388, 2155, 2563
SspI AATATT 1 cut(s) 3159
SspMI CTAG 9 cut(s) 623, 741, 764, 800, 893, 2013, 2415, 2757, 3128
SstI GAGCTC 1 cut(s) 1227
StuI AGGCCT 2 cut(s) 1078, 3185
StyD4I CCNGG 6 cut(s) 7, 8, 131, 670, 3099, 3168
StyI CCWWGG 2 cut(s) 2322, 2414
TaiI ACGT 2 cut(s) 631, 2304
TaqII GACCGA 2 cut(s) 1925, 2679
TatI WGTACW 1 cut(s) 1956
TauI GCSGC 1 cut(s) 2158
TfiI GAWTC 9 cut(s) 187, 338, 442, 964, 986, 1655, 2335, 3137, 3176
Tru1I TTAA 7 cut(s) 345, 486, 909, 1355, 2223, 2448, 3083
Tru9I TTAA 7 cut(s) 345, 486, 909, 1355, 2223, 2448, 3083
TscAI CASTG 8 cut(s) 55, 922, 1118, 1171, 1324, 1642, 2775, 2871
TseFI GTSAC 4 cut(s) 1088, 1561, 2842, 3164
TseI GCWGC 7 cut(s) 455, 554, 751, 1156, 1610, 1937, 2654
Tsp45I GTSAC 4 cut(s) 1088, 1561, 2842, 3164
TspDTI ATGAA 5 cut(s) 161, 543, 1259, 1844, 2599
TspGWI ACGGA 5 cut(s) 958, 1274, 1289, 2456, 2870
TspMI CCCGGG 1 cut(s) 8
TspRI CASTG 8 cut(s) 55, 922, 1118, 1171, 1324, 1642, 2775, 2871
Tth111I GACNNNGTC 2 cut(s) 29, 44
Vha464I CTTAAG 1 cut(s) 2222
VpaK11BI GGWCC 3 cut(s) 1385, 2134, 2956
VspI ATTAAT 1 cut(s) 2448
XapI RAATTY 2 cut(s) 839, 1329
XceI RCATGY 2 cut(s) 1310, 1343
XcmI CCANNNNNNNNNTGG 1 cut(s) 1118
XhoI CTCGAG 1 cut(s) 3063
XmaI CCCGGG 1 cut(s) 8
XmaJI CCTAGG 1 cut(s) 2414
XmiI GTMKAC 1 cut(s) 2438
XspI CTAG 9 cut(s) 623, 741, 764, 800, 893, 2013, 2415, 2757, 3128
Zsp2I ATGCAT 3 cut(s) 1288, 1687, 2281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.