Rroxscaffold_4G00323780

Plant family of unknown function (DUF810)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
54811547 .. 54829382
17836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00323780.1

Sequence Viewer

Length: 3495 bp
ATGGACGAGGAAAATGCTGTGGAGCTTTTACAGAGGTTTCGCCGCGACAGGCGAATACTGCTTGATTTTGTACTGGCTGGTAGCTTAATCAAGAAGGTCATAATGCCTCCCGGGGCGGTTACGCTGGACGATGTGGATCTAGACCAAGTCAGTGTTGATTATGTGCTCAATTGTGCTAGGAAAGGTGGAATGCTTGAACTGTCTGAGGCTATTAGAGACTATCATGACCACACCGGGTTGCCTCAAATGAATAATTCTGGTTCTACTGGTGAATACTTTTTGGTTACGAATCCTGAGTCTTACGGTTCTCCTCCAAAGAGGGTACCACCACCTGTTCCAGACTACACACCGCCTCCTGTTCTCGCGCCACCTCCTGTAATCACACCATCTATTCCAGACCTTGACTCATCTCCAGTCGCATCGAATGTATCACAATCTGAATCTTTTAACTCCACACAAGTTCGAGAACTTACTGTAGATGATATTGAAGATTTTGAGGATGATGATTTAGATGAGACTGACAGTCTCAGGATTTCAAGAAGGATTCGTAATGATGCTGCTGATCTTGCTCTTGGACTGCCTTCTTTTAAAACAGGTATTATAGAAGATGATCTCCGTGAGACTGCATATGAAATCCTCTTGGCGTGTGCTGGCGCTGCAGGGGGTCTCATTGTGCCATCAAAAGAGAAAAAGAAAGACAAAAGGTCAAAGCTGATGAGGAAACTAGGACGTAGTAGAAGTGAAAATGTTGTGAGTCAGTCTCAACGAGCACCTGGGATGGTTGGTTTGTTGGAGGCCATGCGTGTCCAGATGGAGATATCTGAGGCAATGGACATCAGAACTAGACAAGGGCTGCTGAATGCACTAGCAGGAAAAGTGGGAAAAAGAATGGATGCCCTACTAGTTCCTTTGGAACTTTTATGTTGTATTTCAAGGTCAGAATTTTCTGACAAGAAGGCTTACATACGATGGCAGAAAAGGCAGTTGAATATACTAGAGGAGGGGCTTCTTAATCACACTGCTGTTGGATTTGGGGAGTCTGGACGGAAGGCGAGTGAGTTGAGGATTCTTTTAGCAAAGATTGAAGAATCTGAGTCTCTTCCACCCTCCACTGGTGAACTCCAACGAACAGAATGCTTGAGATCTCTTCGAGAGATTACTGCTCCACTTGCTGAGAGGCCTGCTCGGGGTGACTTGACTGGTGAAGTATGCCACTGGGCAGATGGTTATCATTTGAATGTTAGACTATATGAGAAGCTGCTTGTCAGTGTCTTCGATATGTTAGACGAGGGAAAGCTAACTGAGGAAGTGGAAGAAATACTTGAGCTCTTGAAGTCAACATGGCGTGTTTTAGGAATCACGGAGACCATTCATTACACCTGCTATGCATGGGTCTTATTCCGTCAGGGCAGTATTCTTGAGATTGCTGGGTACCATAAGCAAATTAAAGATTTTTCTGATGAGGCTTACCTTGATGGTTGGTTTGCTGGCCTTGTGCTTGATATCTGTTCTTTGGCCGACCATGCACTTCATGTTGATCCCATCATATTACAGTTGGGTCATGTTTTTCCATTTCTGAAAGTTGCATCTCTTAGTAGAGGTATAAGGATACTCATGGTGTATGTTTTCATAGATAAGCATGTTGTCACCAGTGAGCAAGGAATTTTACAACATGCCATTGAACAGTTAAAGAAAATACCATTGAAGGAACAAAGGGGACCGCAAGAGAGGTTACACTTGAAAAGTTTGCTTTCCAGAGTTGAAGGCAAACAGGGCTACCAAGATTTGTCTTTCTTACAGTCCTTTTTGTCTCCCATTCAGAAATGGGCTGATAAGCAACTTGGAGACTACCACCTGCACTTCGCTGAGGTGCCAGTTATGATGGAGAATATAGTGACAGTTGCAATGATTACTCGGAGGCTTCTTCTGGAGGAACCTGAAGCAGCAACGATGCAATCTACATCTGCCACTGATCGAGATCAAATAGAATCTTATATATCATCTTCTATCAAGAATGCATTTACAAGGATCTTGCAATCTCTTGAAAAATCAGACACTAAGCATGAACATCATTTGGCATTGCTTGCTGAAGAGACCAAGAAACTTTTGAAAAAGGACGCGACCTTGTTTATGCCAATTTTATCTCAGAGGCATCCACAAGCAACTGCTGTCTCATGCTCGCTTCTTCATAGGCTTTATGGCAACAAGTTGAAACCTTTTCTTGGTGTTGCTGAGCATCTGACCGAGGATGTGGTATCTGTATTTCCTGCCGCCGATGACCTTGAGCAGTACATTATGGATCTTATTTTGTCGTCTTGTGGAGAGGAAACTGCAGATATATACTCTAGGAAAATAGTTCCTTACCAGATTGAGTCTATATCTGGAACATTAGTGATGCGTTGGGTCAATTCACAACTTGCGAGGATCTTAGGTTGGGTTGAACGGGCTATTCAACAAGAGAGTTGGGACCCAATATCACCTCAACAGCGGCATGGGAGTTCAATAGTTGAAGTATTTAGAATTGTGGAGGAGACTGTTGACCAATTTTTTGAGCTTAAGGTTCCAATGAGGTCTTCAGAATTGAGTAGCCTGTTTCGTGGAGTTGACAATGCATTTCAAGTTTATGCAAATAACGTCATTGACAAATTGGCTACTAAGGAGGACTTAATTCCACCTGTGCCCATTCTCACACGATACAAGAAGGAAGCTGGAATAAAGGCTTTTGTAAAAAAGGAACTATTTGACCCTAGGTTGCCTGATGAGAGAAGGTCTACTGAAATTAATGTTCGAACCACTCCAACCCTCTGTGTTCAGTTGAACACACTTTATTATGCAATCAATGAGCTGAATAAGTTGGAAGATGGCATTTGGGAGCGATGGACGAGGAAGAAGCCCCGCCAAAAGTTTATCAAGAAATCCTTAGATGAGAAATCTAAAAGTTTCATGCAGAAGGACACATTTGATGGGAGTAGGAAAGATATAAACGCTGCCATAGACCGAATATGCGAGTTCACCGGAACTAAAATTATCTTTTGGGATTTGAGGGAACCATTTATCAACAACTTATATAAACCAAGTGTTTCTCTTTCTAGGGATCGTATTGTGACAAGTCTCCTTCAAGCAACACTGGATGGCTTACTCCGTGTCCTATTAGATGGGGGCCCATCCCGAGTTTTCTCTTTGGGCGATGGAAAGCTATTAGAAGAAGATTTAGAGGTCCTCAAGGAGTTTTTTATCTCTGGTGGAGATGGGCTTCCACGAGGAGTGGTCGAAAATCAGGTATCCCGTGTTCGGCTTGTGGTAAAGTTGCACAGTTATGAGACTCGAGAACTGATCGACGACTTAAAATCTTCAAGTGGCCTGGAACTGCAGGGTGGTAGAAGCAAACTAGGAGCTGATTCTAAGACTCTATTGCGAATATTATGTCACCGTGGTGATTCAGAGGCCTCCCAATTTGTCAAGAAACAATACAAGATCCCGAAGTCCTCTGCTTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1164

Amino Acids

131.36

Weight (kDa)

5.87

Isoelectric Point (pI)

49.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_PATROL1 PF25761 796 - 1031 2.6e-67 PATROL1-like, TPR repeats
TPR_PATROL1 PF25761 1031 - 1162 2e-43 PATROL1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1388, 1863
Acc36I ACCTGC 2 cut(s) 1388, 1863
Acc65I GGTACC 2 cut(s) 322, 1431
AccB1I GGYRCC 3 cut(s) 322, 1431, 1870
AccI GTMKAC 1 cut(s) 2771
AccII CGCG 3 cut(s) 45, 365, 2120
AciI CCGC 7 cut(s) 43, 116, 350, 1721, 2271, 2488, 2896
AclWI GGATC 7 cut(s) 144, 1532, 2036, 2307, 2432, 3102, 3469
AcoI YGGCCR 1 cut(s) 1515
AcsI RAATTY 2 cut(s) 941, 1662
AcuI CTGAAG 3 cut(s) 1959, 2109, 2559
AfaI GTAC 4 cut(s) 72, 324, 1433, 2291
AfiI CCNNNNNNNGG 4 cut(s) 1112, 1187, 2222, 3291
AflII CTTAAG 1 cut(s) 2555
AhdI GACNNNNNGTC 2 cut(s) 522, 703
AhlI ACTAGT 1 cut(s) 901
AjnI CCWGG 2 cut(s) 772, 3360
AjuI GAANNNNNNNTTGG 2 cut(s) 2557, 2589
AleI CACNNNNGTG 1 cut(s) 3432
Alw21I GWGCWC 3 cut(s) 168, 772, 1329
AlwI GGATC 7 cut(s) 144, 1532, 2036, 2307, 2432, 3102, 3469
Ama87I CYCGRG 4 cut(s) 110, 1185, 3168, 3324
AoxI GGCC 7 cut(s) 795, 1178, 1489, 1515, 3160, 3358, 3444
ApaI GGGCCC 1 cut(s) 3164
ApeKI GCWGC 6 cut(s) 557, 656, 853, 1258, 1943, 2987
ApoI RAATTY 2 cut(s) 941, 1662
ArsI GACNNNNNNTTYG 6 cut(s) 281, 313, 2531, 2563, 3409, 3441
AseI ATTAAT 1 cut(s) 2781
Asp718I GGTACC 2 cut(s) 322, 1431
AspA2I CCTAGG 1 cut(s) 2747
AspLEI GCGC 2 cut(s) 367, 656
AspS9I GGNCC 5 cut(s) 1718, 2467, 3160, 3161, 3217
AsuC2I CCSGG 3 cut(s) 111, 112, 235
AsuHPI GGTGA 9 cut(s) 281, 1127, 1202, 1214, 1639, 2469, 3004, 3419, 3446
AsuII TTCGAA 1 cut(s) 2788
AvaI CYCGRG 4 cut(s) 110, 1185, 3168, 3324
AvaII GGWCC 3 cut(s) 1718, 2467, 3217
AvrII CCTAGG 1 cut(s) 2747
BaeGI GKGCMC 2 cut(s) 2682, 3164
BanI GGYRCC 3 cut(s) 322, 1431, 1870
BanII GRGCYC 2 cut(s) 1329, 3164
BauI CACGAG 1 cut(s) 3258
BbsI GAAGAC 2 cut(s) 1264, 2565
Bbv12I GWGCWC 3 cut(s) 168, 772, 1329
BbvCI CCTCAGC 1 cut(s) 1866
BbvI GCAGC 6 cut(s) 544, 643, 840, 1245, 1955, 2974
BcgI CGANNNNNNTGC 3 cut(s) 30, 1116, 1150
BciT130I CCWGG 2 cut(s) 774, 3362
BciVI GTATCC 2 cut(s) 1602, 3292
BcnI CCSGG 3 cut(s) 111, 112, 235
BcuI ACTAGT 1 cut(s) 901
BfmI CTRYAG 4 cut(s) 474, 657, 2331, 3368
BfoI RGCGCY 1 cut(s) 657
BfrI CTTAAG 1 cut(s) 2555
BfuAI ACCTGC 2 cut(s) 1388, 1863
BfuI GTATCC 2 cut(s) 1602, 3292
BglII AGATCT 1 cut(s) 1142
BisI GCNGC 9 cut(s) 43, 558, 657, 854, 1259, 1944, 2271, 2489, 2988
BlnI CCTAGG 1 cut(s) 2747
BlpI GCTNAGC 1 cut(s) 2232
BlsI GCNGC 9 cut(s) 44, 559, 658, 855, 1260, 1945, 2272, 2490, 2989
Bme1390I CCNGG 5 cut(s) 111, 112, 235, 774, 3362
Bme18I GGWCC 3 cut(s) 1718, 2467, 3217
BmeRI GACNNNNNGTC 2 cut(s) 522, 703
BmeT110I CYCGRG 4 cut(s) 110, 1185, 3168, 3324
BmgT120I GGNCC 5 cut(s) 1718, 2467, 3160, 3161, 3217
BmrFI CCNGG 5 cut(s) 111, 112, 235, 774, 3362
BmrI ACTGGG 1 cut(s) 1225
BmsI GCATC 8 cut(s) 428, 544, 883, 1595, 1941, 2161, 2245, 2385
BmuI ACTGGG 1 cut(s) 1225
BpiI GAAGAC 2 cut(s) 1264, 2565
BplI GAGNNNNNCTC 4 cut(s) 745, 777, 1168, 1200
BpmI CTGGAG 2 cut(s) 396, 1949
Bpu10I CCTNAGC 1 cut(s) 1866
Bpu1102I GCTNAGC 1 cut(s) 2232
Bpu14I TTCGAA 1 cut(s) 2788
BpuEI CTTGAG 5 cut(s) 1159, 1343, 1439, 2303, 3206
BpuMI CCSGG 3 cut(s) 111, 112, 235
BsaBI GATNNNNATC 3 cut(s) 135, 1227, 1977
BsaI GGTCTC 3 cut(s) 671, 1358, 2087
BsaJI CCNNGG 6 cut(s) 110, 111, 773, 2244, 2747, 3430
BsaWI WCCGGW 1 cut(s) 3014
BsaXI ACNNNNNCTCC 2 cut(s) 337, 367
Bsc4I CCNNNNNNNGG 4 cut(s) 1112, 1187, 2222, 3291
Bse1I ACTGG 9 cut(s) 78, 271, 413, 1117, 1204, 1220, 1650, 1874, 3132
Bse3DI GCAATG 3 cut(s) 834, 1911, 2078
Bse8I GATNNNNATC 3 cut(s) 135, 1227, 1977
BseBI CCWGG 2 cut(s) 774, 3362
BseDI CCNNGG 6 cut(s) 110, 111, 773, 2244, 2747, 3430
BseGI GGATG 7 cut(s) 505, 783, 898, 2152, 2254, 3136, 3164
BseJI GATNNNNATC 3 cut(s) 135, 1227, 1977
BseLI CCNNNNNNNGG 4 cut(s) 1112, 1187, 2222, 3291
BseMI GCAATG 3 cut(s) 834, 1911, 2078
BseNI ACTGG 9 cut(s) 78, 271, 413, 1117, 1204, 1220, 1650, 1874, 3132
BseRI GAGGAG 4 cut(s) 300, 1013, 2543, 3276
BseSI GKGCMC 2 cut(s) 2682, 3164
BseXI GCAGC 6 cut(s) 544, 643, 840, 1245, 1955, 2974
BseYI CCCAGC 1 cut(s) 1427
BsgI GTGCAG 1 cut(s) 1841
Bsh1236I CGCG 3 cut(s) 45, 365, 2120
BshFI GGCC 7 cut(s) 797, 1180, 1491, 1517, 3162, 3360, 3446
BshNI GGYRCC 3 cut(s) 322, 1431, 1870
BsiHKAI GWGCWC 3 cut(s) 168, 772, 1329
BsiHKCI CYCGRG 4 cut(s) 110, 1185, 3168, 3324
BsiSI CCGG 3 cut(s) 111, 234, 3015
BslFI GGGAC 2 cut(s) 1731, 2480
BslI CCNNNNNNNGG 4 cut(s) 1112, 1187, 2222, 3291
BsmFI GGGAC 2 cut(s) 1731, 2480
BsmI GAATGC 4 cut(s) 195, 865, 1139, 2020
BsnI GGCC 7 cut(s) 797, 1180, 1491, 1517, 3162, 3360, 3446
Bso31I GGTCTC 3 cut(s) 671, 1358, 2087
BsoBI CYCGRG 4 cut(s) 110, 1185, 3168, 3324
Bsp119I TTCGAA 1 cut(s) 2788
Bsp120I GGGCCC 1 cut(s) 3160
Bsp1286I GDGCHC 5 cut(s) 168, 772, 1329, 2682, 3164
Bsp1720I GCTNAGC 1 cut(s) 2232
BspACI CCGC 7 cut(s) 43, 116, 350, 1721, 2271, 2488, 2896
BspANI GGCC 7 cut(s) 797, 1180, 1491, 1517, 3162, 3360, 3446
BspFNI CGCG 3 cut(s) 45, 365, 2120
BspHI TCATGA 1 cut(s) 223
BspMAI CTGCAG 3 cut(s) 661, 2335, 3372
BspMI ACCTGC 2 cut(s) 1388, 1863
BspPI GGATC 7 cut(s) 144, 1532, 2036, 2307, 2432, 3102, 3469
BspT104I TTCGAA 1 cut(s) 2788
BspT107I GGYRCC 3 cut(s) 322, 1431, 1870
BspTI CTTAAG 1 cut(s) 2555
BspTNI GGTCTC 3 cut(s) 671, 1358, 2087
BsrDI GCAATG 3 cut(s) 834, 1911, 2078
BsrI ACTGG 9 cut(s) 78, 271, 413, 1117, 1204, 1220, 1650, 1874, 3132
BssECI CCNNGG 6 cut(s) 110, 111, 773, 2244, 2747, 3430
BssSI CACGAG 1 cut(s) 3258
BssT1I CCWWGG 1 cut(s) 2747
Bst2BI CACGAG 1 cut(s) 3258
Bst2UI CCWGG 2 cut(s) 774, 3362
Bst6I CTCTTC 3 cut(s) 1104, 1152, 2085
BstAFI CTTAAG 1 cut(s) 2555
BstAPI GCANNNNNTGC 1 cut(s) 2084
BstBI TTCGAA 1 cut(s) 2788
BstC8I GCNNGC 5 cut(s) 652, 1182, 1489, 2085, 2180
BstDSI CCRYGG 1 cut(s) 3430
BstF5I GGATG 7 cut(s) 505, 783, 898, 2152, 2254, 3136, 3164
BstFNI CGCG 3 cut(s) 45, 365, 2120
BstH2I RGCGCY 1 cut(s) 657
BstHHI GCGC 2 cut(s) 367, 656
BstMWI GCNNNNNNNGC 8 cut(s) 58, 566, 656, 979, 1169, 1523, 1773, 2084
BstNI CCWGG 2 cut(s) 774, 3362
BstNSI RCATGY 2 cut(s) 1643, 1676
BstSCI CCNGG 5 cut(s) 109, 110, 233, 772, 3360
BstSFI CTRYAG 4 cut(s) 474, 657, 2331, 3368
BstSLI GKGCMC 2 cut(s) 2682, 3164
BstUI CGCG 3 cut(s) 45, 365, 2120
BstV1I GCAGC 6 cut(s) 544, 643, 840, 1245, 1955, 2974
BstV2I GAAGAC 2 cut(s) 1264, 2565
BstX2I RGATCY 6 cut(s) 136, 1142, 2028, 2299, 2424, 3474
BstYI RGATCY 6 cut(s) 136, 1142, 2028, 2299, 2424, 3474
BsuI GTATCC 2 cut(s) 1602, 3292
BsuRI GGCC 7 cut(s) 797, 1180, 1491, 1517, 3162, 3360, 3446
BtgI CCRYGG 1 cut(s) 3430
BtgZI GCGATG 2 cut(s) 2890, 3201
BtsCI GGATG 7 cut(s) 505, 783, 898, 2152, 2254, 3136, 3164
BtsI GCAGTG 1 cut(s) 1017
BtsIMutI CAGTG 8 cut(s) 157, 1017, 1110, 1213, 1273, 1657, 1968, 3125
BveI ACCTGC 2 cut(s) 1388, 1863
Cac8I GCNNGC 5 cut(s) 652, 1182, 1489, 2085, 2180
CciI TCATGA 1 cut(s) 223
CfoI GCGC 2 cut(s) 367, 656
Cfr13I GGNCC 5 cut(s) 1718, 2467, 3160, 3161, 3217
Cfr9I CCCGGG 1 cut(s) 110
CseI GACGC 1 cut(s) 2126
Csp6I GTAC 4 cut(s) 71, 323, 1432, 2290
CviQI GTAC 4 cut(s) 71, 323, 1432, 2290
DraI TTTAAA 1 cut(s) 589
DriI GACNNNNNGTC 2 cut(s) 522, 703
EaeI YGGCCR 1 cut(s) 1515
Eam1104I CTCTTC 3 cut(s) 1104, 1152, 2085
Eam1105I GACNNNNNGTC 2 cut(s) 522, 703
EarI CTCTTC 3 cut(s) 1104, 1152, 2085
Ecl136II GAGCTC 1 cut(s) 1327
Eco130I CCWWGG 1 cut(s) 2747
Eco147I AGGCCT 2 cut(s) 1180, 3446
Eco24I GRGCYC 2 cut(s) 1329, 3164
Eco31I GGTCTC 3 cut(s) 671, 1358, 2087
Eco32I GATATC 2 cut(s) 819, 1504
Eco47I GGWCC 3 cut(s) 1718, 2467, 3217
Eco53kI GAGCTC 1 cut(s) 1327
Eco57I CTGAAG 3 cut(s) 1959, 2109, 2559
Eco88I CYCGRG 4 cut(s) 110, 1185, 3168, 3324
EcoICRI GAGCTC 1 cut(s) 1327
EcoO109I RGGNCCY 3 cut(s) 2467, 3160, 3217
EcoRII CCWGG 2 cut(s) 772, 3360
EcoRV GATATC 2 cut(s) 819, 1504
EcoT14I CCWWGG 1 cut(s) 2747
EcoT22I ATGCAT 3 cut(s) 1390, 2020, 2614
EcoT38I GRGCYC 2 cut(s) 1329, 3164
ErhI CCWWGG 1 cut(s) 2747
FalI AAGNNNNNCTT 6 cut(s) 1305, 1337, 2648, 2680, 2903, 2935
FaqI GGGAC 2 cut(s) 1731, 2480
FauI CCCGC 1 cut(s) 2903
FauNDI CATATG 1 cut(s) 628
FblI GTMKAC 1 cut(s) 2771
Fnu4HI GCNGC 9 cut(s) 43, 558, 657, 854, 1259, 1944, 2271, 2489, 2988
FokI GGATG 7 cut(s) 512, 790, 905, 2139, 2261, 3143, 3151
FriOI GRGCYC 2 cut(s) 1329, 3164
Fsp4HI GCNGC 9 cut(s) 43, 558, 657, 854, 1259, 1944, 2271, 2489, 2988
GlaI GCGC 2 cut(s) 366, 655
GluI GCNGC 9 cut(s) 43, 558, 657, 854, 1259, 1944, 2271, 2489, 2988
GsaI CCCAGC 1 cut(s) 1431
GsuI CTGGAG 2 cut(s) 396, 1949
HaeII RGCGCY 1 cut(s) 657
HaeIII GGCC 7 cut(s) 797, 1180, 1491, 1517, 3162, 3360, 3446
HapII CCGG 3 cut(s) 111, 234, 3015
HgaI GACGC 1 cut(s) 2126
HhaI GCGC 2 cut(s) 367, 656
Hin6I GCGC 2 cut(s) 365, 654
HinP1I GCGC 2 cut(s) 365, 654
HincII GTYRAC 3 cut(s) 1338, 2539, 2605
HindII GTYRAC 3 cut(s) 1338, 2539, 2605
HpaII CCGG 3 cut(s) 111, 234, 3015
HphI GGTGA 9 cut(s) 281, 1127, 1202, 1214, 1639, 2469, 3004, 3419, 3446
Hpy166II GTNNAC 6 cut(s) 1118, 1338, 2539, 2605, 2772, 3012
Hpy8I GTNNAC 6 cut(s) 1118, 1338, 2539, 2605, 2772, 3012
Hpy99I CGWCG 1 cut(s) 3341
HpyCH4IV ACGT 2 cut(s) 730, 2634
HpyF10VI GCNNNNNNNGC 8 cut(s) 58, 566, 656, 979, 1169, 1523, 1773, 2084
HpySE526I ACGT 2 cut(s) 730, 2634
HspAI GCGC 2 cut(s) 365, 654
KflI GGGWCCC 1 cut(s) 2467
KpnI GGTACC 2 cut(s) 326, 1435
LmnI GCTCC 4 cut(s) 22, 1168, 2872, 3392
Lsp1109I GCAGC 6 cut(s) 544, 643, 840, 1245, 1955, 2974
LweI GCATC 8 cut(s) 428, 544, 883, 1595, 1941, 2161, 2245, 2385
MaeII ACGT 2 cut(s) 730, 2634
MaeIII GTNAC 8 cut(s) 118, 283, 1190, 1645, 1731, 1894, 3103, 3425
MfeI CAATTG 1 cut(s) 169
MflI RGATCY 6 cut(s) 136, 1142, 2028, 2299, 2424, 3474
MhlI GDGCHC 5 cut(s) 168, 772, 1329, 2682, 3164
MlyI GAGTC 8 cut(s) 305, 398, 763, 1046, 1103, 2381, 3316, 3400
MmeI TCCRAC 5 cut(s) 771, 1006, 1147, 2822, 2835
Mph1103I ATGCAT 3 cut(s) 1390, 2020, 2614
MslI CAYNNNNRTG 3 cut(s) 1236, 3315, 3432
MspA1I CMGCKG 1 cut(s) 2488
MspCI CTTAAG 1 cut(s) 2555
MspI CCGG 3 cut(s) 111, 234, 3015
MspR9I CCNGG 5 cut(s) 111, 112, 235, 774, 3362
MunI CAATTG 1 cut(s) 169
Mva1269I GAATGC 4 cut(s) 195, 865, 1139, 2020
MvaI CCWGG 2 cut(s) 774, 3362
MvnI CGCG 3 cut(s) 45, 365, 2120
MwoI GCNNNNNNNGC 8 cut(s) 58, 566, 656, 979, 1169, 1523, 1773, 2084
NciI CCSGG 3 cut(s) 111, 112, 235
NdeI CATATG 1 cut(s) 628
NmuCI GTSAC 5 cut(s) 1190, 1645, 1894, 3103, 3425
NsiI ATGCAT 3 cut(s) 1390, 2020, 2614
NspI RCATGY 2 cut(s) 1643, 1676
NspV TTCGAA 1 cut(s) 2788
OliI CACNNNNGTG 1 cut(s) 3432
PaeR7I CTCGAG 1 cut(s) 3324
PagI TCATGA 1 cut(s) 223
PaqCI CACCTGC 2 cut(s) 1388, 1863
PceI AGGCCT 2 cut(s) 1180, 3446
PctI GAATGC 4 cut(s) 195, 865, 1139, 2020
PfeI GAWTC 9 cut(s) 289, 440, 544, 1066, 1088, 1356, 1988, 3398, 3437
PflFI GACNNNGTC 1 cut(s) 146
PkrI GCNGC 9 cut(s) 44, 559, 658, 855, 1260, 1945, 2272, 2490, 2989
PleI GAGTC 8 cut(s) 304, 398, 762, 1045, 1102, 2380, 3316, 3400
PpsI GAGTC 8 cut(s) 304, 398, 762, 1045, 1102, 2380, 3316, 3400
PpuMI RGGWCCY 2 cut(s) 2467, 3217
PshBI ATTAAT 1 cut(s) 2781
Psp124BI GAGCTC 1 cut(s) 1329
Psp5II RGGWCCY 2 cut(s) 2467, 3217
Psp6I CCWGG 2 cut(s) 772, 3360
PspFI CCCAGC 1 cut(s) 1427
PspGI CCWGG 2 cut(s) 772, 3360
PspOMI GGGCCC 1 cut(s) 3160
PspPI GGNCC 5 cut(s) 1718, 2467, 3160, 3161, 3217
PspPPI RGGWCCY 2 cut(s) 2467, 3217
PsrI GAACNNNNNNTAC 2 cut(s) 3273, 3305
PstI CTGCAG 3 cut(s) 661, 2335, 3372
PsuI RGATCY 6 cut(s) 136, 1142, 2028, 2299, 2424, 3474
PsyI GACNNNGTC 1 cut(s) 146
RsaI GTAC 4 cut(s) 72, 324, 1433, 2291
RsaNI GTAC 4 cut(s) 71, 323, 1432, 2290
RseI CAYNNNNRTG 3 cut(s) 1236, 3315, 3432
SacI GAGCTC 1 cut(s) 1329
SatI GCNGC 9 cut(s) 43, 558, 657, 854, 1259, 1944, 2271, 2489, 2988
Sau96I GGNCC 5 cut(s) 1718, 2467, 3160, 3161, 3217
SchI GAGTC 8 cut(s) 305, 398, 763, 1046, 1103, 2381, 3316, 3400
ScrFI CCNGG 5 cut(s) 111, 112, 235, 774, 3362
SduI GDGCHC 5 cut(s) 168, 772, 1329, 2682, 3164
SfaNI GCATC 8 cut(s) 428, 544, 883, 1595, 1941, 2161, 2245, 2385
SfcI CTRYAG 4 cut(s) 474, 657, 2331, 3368
Sfr274I CTCGAG 1 cut(s) 3324
SfuI TTCGAA 1 cut(s) 2788
SinI GGWCC 3 cut(s) 1718, 2467, 3217
SlaI CTCGAG 1 cut(s) 3324
SmaI CCCGGG 1 cut(s) 112
SmiMI CAYNNNNRTG 3 cut(s) 1236, 3315, 3432
SmlI CTYRAG 7 cut(s) 1138, 1322, 1418, 2282, 2555, 3221, 3324
SmoI CTYRAG 7 cut(s) 1138, 1322, 1418, 2282, 2555, 3221, 3324
SpeI ACTAGT 1 cut(s) 901
SseBI AGGCCT 2 cut(s) 1180, 3446
SsiI CCGC 7 cut(s) 43, 116, 350, 1721, 2271, 2488, 2896
SspI AATATT 1 cut(s) 3420
SstI GAGCTC 1 cut(s) 1329
StuI AGGCCT 2 cut(s) 1180, 3446
StyD4I CCNGG 5 cut(s) 109, 110, 233, 772, 3360
StyI CCWWGG 1 cut(s) 2747
TaiI ACGT 2 cut(s) 733, 2637
TaqI TCGA 9 cut(s) 422, 463, 1150, 1275, 1975, 2788, 3270, 3325, 3336
TaqII GACCGA 2 cut(s) 2258, 3012
TatI WGTACW 2 cut(s) 70, 2289
TauI GCSGC 3 cut(s) 45, 2273, 2491
TfiI GAWTC 9 cut(s) 289, 440, 544, 1066, 1088, 1356, 1988, 3398, 3437
TscAI CASTG 8 cut(s) 157, 1024, 1117, 1220, 1273, 1657, 1975, 3132
TseFI GTSAC 5 cut(s) 1190, 1645, 1894, 3103, 3425
TseI GCWGC 6 cut(s) 557, 656, 853, 1258, 1943, 2987
Tsp45I GTSAC 5 cut(s) 1190, 1645, 1894, 3103, 3425
TspDTI ATGAA 8 cut(s) 263, 645, 1361, 1520, 1618, 2079, 2177, 2932
TspGWI ACGGA 5 cut(s) 605, 1060, 1376, 1391, 3131
TspMI CCCGGG 1 cut(s) 110
TspRI CASTG 8 cut(s) 157, 1024, 1117, 1220, 1273, 1657, 1975, 3132
Tth111I GACNNNGTC 1 cut(s) 146
Vha464I CTTAAG 1 cut(s) 2555
VpaK11BI GGWCC 3 cut(s) 1718, 2467, 3217
VspI ATTAAT 1 cut(s) 2781
XapI RAATTY 2 cut(s) 941, 1662
XbaI TCTAGA 1 cut(s) 139
XceI RCATGY 2 cut(s) 1643, 1676
XcmI CCANNNNNNNNNTGG 1 cut(s) 1220
XhoI CTCGAG 1 cut(s) 3324
XmaI CCCGGG 1 cut(s) 110
XmaJI CCTAGG 1 cut(s) 2747
XmiI GTMKAC 1 cut(s) 2771
Zsp2I ATGCAT 3 cut(s) 1390, 2020, 2614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.