Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005738

Physical Location & Seq

Genomic Coordinates Forward (+)

9946088 .. 9949343

Gene Structure 3256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0060300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTTAAATAGCAAAGGGGATCTCGCTCCATCCTTAGCATCTATCAATCCCGACGGCCAGTTCTCCTTCTCCGGCTCCTGGGACGGTGAGCTTCATCTCCGTCAGAAGATGGAAGCCTTCGCCCTCTTCCTCTTCCCGCTCAACCCTCCATTCAGATCCAGTCCCCGGAAGAATTGTCTCCCACTGCTCCGGCCTCTGGGTTTGGTGAAAGGACTAATATTGGGCTCTGACATTTTTTGGGGCTGTTCTGAATCTGTTGGAGAGGGAGAGATGGCGGAATTTGCAAACCAAGGGAAGGTAATGGATCGCTGCACTTTCTGGCGATTGATTCACAGCAAACCAAAACAAGATGGTAGTGGTACCCTGCCAATTAATGACGAAGCAGAAAAAATCTTTTTGGAATTGGATAAGCTTGAGCAAAGGGAGCGCCTAAATGGTAGGGAACTTACTACGGTCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009987 GO:0010118 GO:0016020 GO:0030054 GO:0044424 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF810

Protein Analysis

153

Amino Acids

17.11

Weight (kDa)

5.73

Isoelectric Point (pI)

34.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06970
fragaria_vesca	FvH4_7g03630 FvH4_7g03630 FvH4_7g03630 FvH4_7g03630 FvH4_7g03630 FvH4_7g03630 FvH4_7g03630
malus_domestica	MD02G1278500.v1.1 MD07G1046600.v1.1
prunus_persica	Prupe.2G042100_v2.0.a1 Prupe.2G042100_v2.0.a1 Prupe.2G042100_v2.0.a1 Prupe.2G042100_v2.0.a1 Prupe.2G042100_v2.0.a1
pyrus_communis	pycom02g23870 pycom07g03350
rosa_chinensis	RchiOBHm_Chr1g0326411
rosa_laevigata	RLG00000030074
rosa_multiflora	Rmu_sc0014190.1_g000004
rosa_roxburghii	Rroxscaffold_4G00323780
rosa_rugosa	Rorug01G0060300 Rorug01G0060300
rosa_samantha	Rh1AG076300 Rh1BG062300 Rh1CG074400 Rh1DG081700
rosa_wichuraiana	Rw1G006080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	359
AccB1I	GGYRCC	1 cut(s)	359
AccBSI	CCGCTC	1 cut(s)	139
AciI	CCGC	2 cut(s)	137, 275
AclWI	GGATC	3 cut(s)	27, 150, 312
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	278
AfaI	GTAC	1 cut(s)	361
AfiI	CCNNNNNNNGG	4 cut(s)	78, 165, 196, 295
AjnI	CCWGG	1 cut(s)	77
AluBI	AGCT	2 cut(s)	91, 412
AluI	AGCT	2 cut(s)	91, 412
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	3 cut(s)	27, 150, 312
AoxI	GGCC	2 cut(s)	55, 191
ApeKI	GCWGC	1 cut(s)	309
ApoI	RAATTY	1 cut(s)	278
AseI	ATTAAT	1 cut(s)	372
Asp718I	GGTACC	1 cut(s)	359
AspLEI	GCGC	1 cut(s)	429
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	2 cut(s)	98, 217
BanI	GGYRCC	1 cut(s)	359
BanII	GRGCYC	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	296
BccI	CCATC	4 cut(s)	37, 103, 265, 344
BceAI	ACGGC	1 cut(s)	70
BciT130I	CCWGG	1 cut(s)	79
BcnI	CCSGG	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	182
BfoI	RGCGCY	1 cut(s)	430
BisI	GCNGC	1 cut(s)	310
BlsI	GCNGC	1 cut(s)	311
Bme1390I	CCNGG	2 cut(s)	79, 166
BmiI	GGNNCC	2 cut(s)	76, 361
BmrFI	CCNGG	2 cut(s)	79, 166
BmsI	GCATC	1 cut(s)	47
Bpu10I	CCTNAGC	1 cut(s)	34
BpuEI	CTTGAG	1 cut(s)	434
BpuMI	CCSGG	1 cut(s)	166
BsaJI	CCNNGG	3 cut(s)	78, 164, 289
Bsc4I	CCNNNNNNNGG	4 cut(s)	78, 165, 196, 295
Bse1I	ACTGG	2 cut(s)	58, 159
BseBI	CCWGG	1 cut(s)	79
BseDI	CCNNGG	3 cut(s)	78, 164, 289
BseGI	GGATG	1 cut(s)	29
BseLI	CCNNNNNNNGG	4 cut(s)	78, 165, 196, 295
BseNI	ACTGG	2 cut(s)	58, 159
BseXI	GCAGC	1 cut(s)	296
BsgI	GTGCAG	1 cut(s)	295
BshFI	GGCC	2 cut(s)	57, 193
BshNI	GGYRCC	1 cut(s)	359
BsiSI	CCGG	3 cut(s)	72, 166, 190
BslFI	GGGAC	2 cut(s)	95, 147
BslI	CCNNNNNNNGG	4 cut(s)	78, 165, 196, 295
BsmAI	GTCTC	1 cut(s)	182
BsmFI	GGGAC	2 cut(s)	95, 147
BsnI	GGCC	2 cut(s)	57, 193
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	3 cut(s)	19, 155, 304
BspACI	CCGC	2 cut(s)	137, 275
BspANI	GGCC	2 cut(s)	57, 193
BspLI	GGNNCC	2 cut(s)	76, 361
BspPI	GGATC	3 cut(s)	27, 150, 312
BspT107I	GGYRCC	1 cut(s)	359
BsrBI	CCGCTC	1 cut(s)	139
BsrI	ACTGG	2 cut(s)	58, 159
BssECI	CCNNGG	3 cut(s)	78, 164, 289
BssMI	GATC	3 cut(s)	19, 155, 304
BssT1I	CCWWGG	1 cut(s)	289
Bst2UI	CCWGG	1 cut(s)	79
Bst4CI	ACNGT	2 cut(s)	86, 454
Bst6I	CTCTTC	2 cut(s)	131, 137
BstDEI	CTNAG	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	430
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	3 cut(s)	22, 158, 307
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	3 cut(s)	19, 155, 304
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 424
BstNI	CCWGG	1 cut(s)	79
BstSCI	CCNGG	2 cut(s)	77, 164
BstV1I	GCAGC	1 cut(s)	296
BstX2I	RGATCY	2 cut(s)	19, 155
BstYI	RGATCY	2 cut(s)	19, 155
BsuRI	GGCC	2 cut(s)	57, 193
BtsCI	GGATG	1 cut(s)	29
BtsI	GCAGTG	1 cut(s)	182
BtsIMutI	CAGTG	1 cut(s)	182
CfoI	GCGC	1 cut(s)	429
Csp6I	GTAC	1 cut(s)	360
CviJI	RGCY	8 cut(s)	57, 75, 91, 116, 193, 225, 243, 412
CviKI_1	RGCY	8 cut(s)	57, 75, 91, 116, 193, 225, 243, 412
CviQI	GTAC	1 cut(s)	360
DdeI	CTNAG	1 cut(s)	34
DpnI	GATC	3 cut(s)	21, 157, 306
DpnII	GATC	3 cut(s)	19, 155, 304
EaeI	YGGCCR	1 cut(s)	55
Eam1104I	CTCTTC	2 cut(s)	131, 137
EarI	CTCTTC	2 cut(s)	131, 137
EciI	GGCGGA	1 cut(s)	290
Eco130I	CCWWGG	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	77
EcoT14I	CCWWGG	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	227
ErhI	CCWWGG	1 cut(s)	289
FaiI	YATR	1 cut(s)	460
FaqI	GGGAC	2 cut(s)	95, 147
FauI	CCCGC	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	310
FokI	GGATG	1 cut(s)	16
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	1 cut(s)	310
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	1 cut(s)	310
HaeII	RGCGCY	1 cut(s)	430
HaeIII	GGCC	2 cut(s)	57, 193
HapII	CCGG	3 cut(s)	72, 166, 190
HhaI	GCGC	1 cut(s)	429
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	2 cut(s)	251, 328
HpaII	CCGG	3 cut(s)	72, 166, 190
HphI	GGTGA	2 cut(s)	98, 217
Hpy188I	TCNGA	4 cut(s)	105, 155, 229, 250
Hpy188III	TCNNGA	1 cut(s)	50
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	3 cut(s)	76, 127, 289
HpyCH4III	ACNGT	2 cut(s)	86, 454
HpyCH4V	TGCA	2 cut(s)	284, 312
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 424
HpyF3I	CTNAG	1 cut(s)	34
HspAI	GCGC	1 cut(s)	427
KpnI	GGTACC	1 cut(s)	363
Kzo9I	GATC	3 cut(s)	19, 155, 304
LmnI	GCTCC	4 cut(s)	31, 80, 192, 424
Lsp1109I	GCAGC	1 cut(s)	296
LweI	GCATC	1 cut(s)	47
MalI	GATC	3 cut(s)	21, 157, 306
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	3 cut(s)	19, 155, 304
MboII	GAAGA	4 cut(s)	118, 118, 124, 181
MflI	RGATCY	2 cut(s)	19, 155
MhlI	GDGCHC	1 cut(s)	227
MluCI	AATT	4 cut(s)	172, 278, 369, 401
MmeI	TCCRAC	1 cut(s)	238
MnlI	CCTC	5 cut(s)	134, 140, 156, 204, 256
MseI	TTAA	2 cut(s)	5, 372
MspI	CCGG	3 cut(s)	72, 166, 190
MspR9I	CCNGG	2 cut(s)	79, 166
MvaI	CCWGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	2 cut(s)	281, 424
NciI	CCSGG	1 cut(s)	166
NdeII	GATC	3 cut(s)	19, 155, 304
NlaIV	GGNNCC	2 cut(s)	76, 361
PfeI	GAWTC	2 cut(s)	251, 328
PkrI	GCNGC	1 cut(s)	311
PshBI	ATTAAT	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	77
PspN4I	GGNNCC	2 cut(s)	76, 361
PsuI	RGATCY	2 cut(s)	19, 155
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
SaqAI	TTAA	2 cut(s)	5, 372
SatI	GCNGC	1 cut(s)	310
Sau3AI	GATC	3 cut(s)	19, 155, 304
ScrFI	CCNGG	2 cut(s)	79, 166
SduI	GDGCHC	1 cut(s)	227
SetI	ASST	3 cut(s)	93, 300, 414
SfaNI	GCATC	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
Sse9I	AATT	4 cut(s)	172, 278, 369, 401
SsiI	CCGC	2 cut(s)	137, 275
SspI	AATATT	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	77, 164
StyI	CCWWGG	1 cut(s)	289
TaaI	ACNGT	2 cut(s)	86, 454
TasI	AATT	4 cut(s)	172, 278, 369, 401
TfiI	GAWTC	2 cut(s)	251, 328
Tru1I	TTAA	2 cut(s)	5, 372
Tru9I	TTAA	2 cut(s)	5, 372
TscAI	CASTG	1 cut(s)	189
TseI	GCWGC	1 cut(s)	309
TspDTI	ATGAA	1 cut(s)	83
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	1 cut(s)	189
VspI	ATTAAT	1 cut(s)	372
XapI	RAATTY	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.