Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014190.1

Orthogroup ID

OG0005738

Physical Location & Seq

Genomic Coordinates Reverse (-)

6872 .. 21922

Gene Structure 15051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014190.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3177 bp

atggacgaggaaaatgctgtggagcttttacagaggtttcgccgcgacaggcgaatactgcttgattttgtactggctggtagcttaatcaagaaggtcataatgcctcccggggcggttacgctggacgatgtcgatctagaccaagtcagtgttgattatgtgctcaattgtgctaagaaaggtggaatgcttgaactgtctgaggctattagggactatcatgaccataccgggttgcctcaaatgaataattctggttctactggtgaatactttttggttacgaatcctgagtcttacggttctcctccaatgagggcaccaccacctgttccagactacacaccgcctcctgttctcgcgccacctcctgtaatcacaccatctattccagaccttgactcatctccagtcgaatcgaatgtatcacaatctgaatcttttaactctacacaagttcgagaacttactgtagatgatattgaagattttgaggatgatgatttagatgagactgacagtctgaggatttcaagaaggattcgtaatgatgctgctgatcttgctcttggattgccttcttttaagacaggtattatagaagatgatctccgcgagactgcatatgaaatcctcttggcgtgtgctggtgctgcagggggtctcattgtgccatcaaaagagaaaaagaaagacaaaaggtcaaagctgatgaggaaactaggacgtagtagaagtgaaaatgttgtgagccagtctcaacgagcacctgggatggttggtttgttggaagccatgcgtgtccagatggagatatctgaggcaatggacatcagaactagacaagggctgctgaatgcactagcaggaaaagtgggaaaaagaatggatgccctacttgttcctttggaacttttatgttgtatttcacggtcagaattttctgacaagaaggcttatatacgatggcagaaaaggcagttgaatatactagaggaggggcttcttaatcacactgctgttggatttggggagtctggacggaaggcgagtgagttgaggattcttttagccaagattgaagaatctgagtctcttccaccctccactggtgaactccaacgaacagaatgcttgagatctcttcgagagattactgctccacttgctgagaggcctgctcggggtgacttgactggtgaagtatgccactgggcagatggttatcatttgaatgttagactatatgagaagctgcttgtcagtgtcttcgatatgttagatgagggaaagctaactgaggaagtggaagaaatacttgagctcttgaagtcaacatggcgtgttttaggtatcacggagaccattcattacacctgctatgcatgggtcttattccgtcagcatgttgttaccagtgagcaaggaattttacagcatgccattgaacagttaaagaaaataccattgaaggaacaaaggggaccgcaagagaggttacacttgaaaagtttgcattccagagttgaaggcaaacagggttaccaagatttatctttcttacagtcctttttgtctcccattcagaaatgggctgataagcaacttggagactaccacctgcacttcgctgagatcttgcagtctcttgaaaaatcagacaccaagcacgaacatcatttggcattgcttgctgaagagaccaagaaacttttgaaaaaggacacggccttgtttatgccaattttatctcagaggcatccacaagcaactgcagtctcatcctcgctgcttcataggctttatggcaacaagttgaaaccttttcttggtgttgctgagcatctgaccgaggatgtggtatctgtatttcctgctgccgacgaccttgagcagtacatgatggaacttattttgtcgtcttgtggagaggaaactgcagagatatactctaggaaaatagttccttaccagattgagtctatatctggaacgttagtgatgcgttgggtcaattcacaacttgcgaggatcttaggttgggtggaacgggctattcaacaagagaggtgggacccaatatcacctcaacagcggcatgggagttcaatagttgaagtatttagaattgtagaggagactgttgaccaattttttgagcttaaggttccaatgaggtcttcagaattgagtagcctgtttcgtggagttgacaatgcatttcaagtttatgcaaatcacgtcattgacaaattggctaccaaggaggacttgattccacccgtgcccattctcacacgatacaagaaggaagctgggataaaggcttttgtaaaaaaggaactatttgaccctaggttgcctgatgagagaaggtctacggaaattaatgttcgaaccactccaaccctctgtgttcagttgaacacactttattatgcaatcaatgagttgaataagttggaagatggcatttgggagcgatggacgaggaagaagccccgccaaaagtttatcaagaaatccttagatgagaaatctaaaagtttcatgcagaaggacacatttgatgggagtaggaaagatataaacgctgctatagaccgaatatgcgagttcaccggaactaaaattatcttttgggatttgagggaaccatttatcaacaacttatataaaccaagtgtttctctttctaggttcgaggcagtgatcgaaccacttgatatggaactttgtcaactatgtgatataattgtggaaccactcagggatcgtattgtgacaagtctccttcaagcaacactggacggcttactccgtgtcctattagatgggggcccatcccgagttttctctttgggcgatggaaaacaattagaagaagatttagaggtcctcaaggagttttttatctctggtggagatgggcttccaagaggagtggtcgaaaatcaggtatcacgcgttcggcttgtggtaaagttgcacagttatgagactcgagaactgattgacgacttaaaatcttcaagtggcatggaactgcagggtggtagaagcaaactaggagctgattctaagactctattgcgaatattatgtcaccggggtgattcagaggcctcccaatttgtcaagaaacaatacaagatcccgaagtcctctgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009987 GO:0010118 GO:0016020 GO:0030054 GO:0044424 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF810

Protein Analysis

1058

Amino Acids

119.79

Weight (kDa)

5.77

Isoelectric Point (pI)

51.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06970
fragaria_vesca	FvH4_7g03630 FvH4_7g03630 FvH4_7g03630 FvH4_7g03630 FvH4_7g03630 FvH4_7g03630 FvH4_7g03630
malus_domestica	MD02G1278500.v1.1 MD07G1046600.v1.1
prunus_persica	Prupe.2G042100_v2.0.a1 Prupe.2G042100_v2.0.a1 Prupe.2G042100_v2.0.a1 Prupe.2G042100_v2.0.a1 Prupe.2G042100_v2.0.a1
pyrus_communis	pycom02g23870 pycom07g03350
rosa_chinensis	RchiOBHm_Chr1g0326411
rosa_laevigata	RLG00000030074
rosa_multiflora	Rmu_sc0014190.1_g000004
rosa_roxburghii	Rroxscaffold_4G00323780
rosa_rugosa	Rorug01G0060300 Rorug01G0060300
rosa_samantha	Rh1AG076300 Rh1BG062300 Rh1CG074400 Rh1DG081700
rosa_wichuraiana	Rw1G006080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1388, 1632
Acc36I	ACCTGC	2 cut(s)	1388, 1632
AccB1I	GGYRCC	1 cut(s)	322
AccI	GTMKAC	1 cut(s)	2381
AccII	CGCG	4 cut(s)	45, 365, 618, 2970
AciI	CCGC	7 cut(s)	43, 116, 350, 616, 1490, 2098, 2506
AclI	AACGTT	1 cut(s)	1997
AclWI	GGATC	3 cut(s)	2042, 2784, 3151
AcsI	RAATTY	2 cut(s)	941, 1431
AcuI	CTGAAG	2 cut(s)	1719, 2169
AfaI	GTAC	2 cut(s)	72, 1901
AfiI	CCNNNNNNNGG	3 cut(s)	1112, 1187, 1832
AflII	CTTAAG	1 cut(s)	2165
AflIII	ACRYGT	1 cut(s)	2968
AhdI	GACNNNNNGTC	2 cut(s)	522, 703
AjiI	CACGTC	1 cut(s)	2245
AjnI	CCWGG	1 cut(s)	772
AjuI	GAANNNNNNNTTGG	2 cut(s)	2167, 2199
AleI	CACNNNNGTG	1 cut(s)	3114
AluBI	AGCT	9 cut(s)	25, 84, 712, 1258, 1297, 1327, 2164, 2318, 3077
AluI	AGCT	9 cut(s)	25, 84, 712, 1258, 1297, 1327, 2164, 2318, 3077
Alw21I	GWGCWC	3 cut(s)	168, 772, 1329
AlwI	GGATC	3 cut(s)	2042, 2784, 3151
Ama87I	CYCGRG	4 cut(s)	110, 1185, 2850, 3006
AoxI	GGCC	4 cut(s)	1178, 1731, 2842, 3126
ApaI	GGGCCC	1 cut(s)	2846
ApeKI	GCWGC	7 cut(s)	557, 656, 853, 1258, 1792, 1880, 2597
ApoI	RAATTY	2 cut(s)	941, 1431
ArsI	GACNNNNNNTTYG	6 cut(s)	281, 313, 2141, 2173, 3091, 3123
AseI	ATTAAT	1 cut(s)	2391
AspA2I	CCTAGG	1 cut(s)	2357
AspLEI	GCGC	1 cut(s)	367
AspS9I	GGNCC	5 cut(s)	1487, 2077, 2842, 2843, 2899
AsuC2I	CCSGG	4 cut(s)	111, 112, 235, 3113
AsuHPI	GGTGA	8 cut(s)	281, 1127, 1202, 1214, 2079, 2614, 3101, 3128
AsuII	TTCGAA	1 cut(s)	2398
AvaI	CYCGRG	4 cut(s)	110, 1185, 2850, 3006
AvaII	GGWCC	3 cut(s)	1487, 2077, 2899
AvrII	CCTAGG	1 cut(s)	2357
BaeGI	GKGCMC	3 cut(s)	325, 2292, 2846
BanI	GGYRCC	1 cut(s)	322
BanII	GRGCYC	2 cut(s)	1329, 2846
BbsI	GAAGAC	2 cut(s)	1264, 2175
Bbv12I	GWGCWC	3 cut(s)	168, 772, 1329
BbvI	GCAGC	7 cut(s)	544, 643, 840, 1245, 1779, 1867, 2584
BceAI	ACGGC	2 cut(s)	1746, 2830
BcgI	CGANNNNNNTGC	3 cut(s)	30, 1116, 1150
BciT130I	CCWGG	1 cut(s)	774
BcnI	CCSGG	4 cut(s)	111, 112, 235, 3113
BfaI	CTAG	9 cut(s)	140, 725, 843, 866, 995, 1956, 2358, 2700, 3071
BfmI	CTRYAG	6 cut(s)	474, 657, 1776, 1941, 2601, 3050
BfrI	CTTAAG	1 cut(s)	2165
BfuAI	ACCTGC	2 cut(s)	1388, 1632
BglII	AGATCT	2 cut(s)	1142, 1638
BisI	GCNGC	9 cut(s)	43, 558, 657, 854, 1259, 1793, 1881, 2099, 2598
BlnI	CCTAGG	1 cut(s)	2357
BlpI	GCTNAGC	1 cut(s)	1842
BlsI	GCNGC	9 cut(s)	44, 559, 658, 855, 1260, 1794, 1882, 2100, 2599
Bme1390I	CCNGG	5 cut(s)	111, 112, 235, 774, 3113
Bme18I	GGWCC	3 cut(s)	1487, 2077, 2899
BmeRI	GACNNNNNGTC	2 cut(s)	522, 703
BmeT110I	CYCGRG	4 cut(s)	110, 1185, 2850, 3006
BmgBI	CACGTC	1 cut(s)	2245
BmgT120I	GGNCC	5 cut(s)	1487, 2077, 2842, 2843, 2899
BmiI	GGNNCC	9 cut(s)	324, 1488, 2078, 2079, 2172, 2658, 2766, 2843, 2844
BmrFI	CCNGG	5 cut(s)	111, 112, 235, 774, 3113
BmrI	ACTGGG	1 cut(s)	1225
BmsI	GCATC	5 cut(s)	544, 883, 1771, 1855, 1995
BmuI	ACTGGG	1 cut(s)	1225
BpiI	GAAGAC	2 cut(s)	1264, 2175
BplI	GAGNNNNNCTC	6 cut(s)	745, 777, 1168, 1200, 1937, 1969
BpmI	CTGGAG	1 cut(s)	396
Bpu1102I	GCTNAGC	1 cut(s)	1842
Bpu14I	TTCGAA	1 cut(s)	2398
BpuEI	CTTGAG	4 cut(s)	1159, 1343, 1913, 2888
BpuMI	CCSGG	4 cut(s)	111, 112, 235, 3113
BsaBI	GATNNNNATC	2 cut(s)	135, 1227
BsaI	GGTCTC	3 cut(s)	671, 1358, 1697
BsaJI	CCNNGG	7 cut(s)	110, 111, 773, 1854, 2265, 2357, 3112
BsaWI	WCCGGW	1 cut(s)	2624
BsaXI	ACNNNNNCTCC	2 cut(s)	337, 367
Bsc4I	CCNNNNNNNGG	3 cut(s)	1112, 1187, 1832
Bse1I	ACTGG	9 cut(s)	78, 271, 413, 757, 1117, 1204, 1220, 1419, 2814
Bse3DI	GCAATG	2 cut(s)	834, 1688
Bse8I	GATNNNNATC	2 cut(s)	135, 1227
BseBI	CCWGG	1 cut(s)	774
BseDI	CCNNGG	7 cut(s)	110, 111, 773, 1854, 2265, 2357, 3112
BseGI	GGATG	7 cut(s)	505, 783, 898, 1762, 1784, 1864, 2846
BseJI	GATNNNNATC	2 cut(s)	135, 1227
BseLI	CCNNNNNNNGG	3 cut(s)	1112, 1187, 1832
BseMI	GCAATG	2 cut(s)	834, 1688
BseNI	ACTGG	9 cut(s)	78, 271, 413, 757, 1117, 1204, 1220, 1419, 2814
BseRI	GAGGAG	4 cut(s)	300, 1013, 2153, 2958
BseSI	GKGCMC	3 cut(s)	325, 2292, 2846
BseXI	GCAGC	7 cut(s)	544, 643, 840, 1245, 1779, 1867, 2584
BseYI	CCCAGC	1 cut(s)	2318
BsgI	GTGCAG	1 cut(s)	1610
Bsh1236I	CGCG	4 cut(s)	45, 365, 618, 2970
BshFI	GGCC	4 cut(s)	1180, 1733, 2844, 3128
BshNI	GGYRCC	1 cut(s)	322
BsiHKAI	GWGCWC	3 cut(s)	168, 772, 1329
BsiHKCI	CYCGRG	4 cut(s)	110, 1185, 2850, 3006
BsiSI	CCGG	4 cut(s)	111, 234, 2625, 3112
BslFI	GGGAC	3 cut(s)	230, 1500, 2090
BslI	CCNNNNNNNGG	3 cut(s)	1112, 1187, 1832
BsmFI	GGGAC	3 cut(s)	230, 1500, 2090
BsmI	GAATGC	4 cut(s)	195, 865, 1139, 1519
BsnI	GGCC	4 cut(s)	1180, 1733, 2844, 3128
Bso31I	GGTCTC	3 cut(s)	671, 1358, 1697
BsoBI	CYCGRG	4 cut(s)	110, 1185, 2850, 3006
Bsp119I	TTCGAA	1 cut(s)	2398
Bsp120I	GGGCCC	1 cut(s)	2842
Bsp1286I	GDGCHC	6 cut(s)	168, 325, 772, 1329, 2292, 2846
Bsp143I	GATC	9 cut(s)	136, 562, 610, 1142, 1638, 2034, 2715, 2776, 3156
Bsp1720I	GCTNAGC	1 cut(s)	1842
BspACI	CCGC	7 cut(s)	43, 116, 350, 616, 1490, 2098, 2506
BspANI	GGCC	4 cut(s)	1180, 1733, 2844, 3128
BspFNI	CGCG	4 cut(s)	45, 365, 618, 2970
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	9 cut(s)	324, 1488, 2078, 2079, 2172, 2658, 2766, 2843, 2844
BspMAI	CTGCAG	4 cut(s)	661, 1780, 1945, 3054
BspMI	ACCTGC	2 cut(s)	1388, 1632
BspPI	GGATC	3 cut(s)	2042, 2784, 3151
BspT104I	TTCGAA	1 cut(s)	2398
BspT107I	GGYRCC	1 cut(s)	322
BspTI	CTTAAG	1 cut(s)	2165
BspTNI	GGTCTC	3 cut(s)	671, 1358, 1697
BsrDI	GCAATG	2 cut(s)	834, 1688
BsrI	ACTGG	9 cut(s)	78, 271, 413, 757, 1117, 1204, 1220, 1419, 2814
BssECI	CCNNGG	7 cut(s)	110, 111, 773, 1854, 2265, 2357, 3112
BssMI	GATC	9 cut(s)	136, 562, 610, 1142, 1638, 2034, 2715, 2776, 3156
BssT1I	CCWWGG	2 cut(s)	2265, 2357
Bst2UI	CCWGG	1 cut(s)	774
Bst4CI	ACNGT	9 cut(s)	201, 305, 475, 524, 936, 1455, 1569, 2146, 2996
Bst6I	CTCTTC	3 cut(s)	1104, 1152, 1695
BstAFI	CTTAAG	1 cut(s)	2165
BstAPI	GCANNNNNTGC	1 cut(s)	1694
BstBI	TTCGAA	1 cut(s)	2398
BstC8I	GCNNGC	3 cut(s)	1182, 1443, 1695
BstEII	GGTNACC	1 cut(s)	1544
BstF5I	GGATG	7 cut(s)	505, 783, 898, 1762, 1784, 1864, 2846
BstFNI	CGCG	4 cut(s)	45, 365, 618, 2970
BstHHI	GCGC	1 cut(s)	367
BstKTI	GATC	9 cut(s)	139, 565, 613, 1145, 1641, 2037, 2718, 2779, 3159
BstMBI	GATC	9 cut(s)	136, 562, 610, 1142, 1638, 2034, 2715, 2776, 3156
BstMWI	GCNNNNNNNGC	7 cut(s)	58, 566, 656, 979, 1169, 1694, 1801
BstNI	CCWGG	1 cut(s)	774
BstNSI	RCATGY	2 cut(s)	1412, 1445
BstPI	GGTNACC	1 cut(s)	1544
BstSCI	CCNGG	5 cut(s)	109, 110, 233, 772, 3111
BstSFI	CTRYAG	6 cut(s)	474, 657, 1776, 1941, 2601, 3050
BstSLI	GKGCMC	3 cut(s)	325, 2292, 2846
BstUI	CGCG	4 cut(s)	45, 365, 618, 2970
BstV1I	GCAGC	7 cut(s)	544, 643, 840, 1245, 1779, 1867, 2584
BstV2I	GAAGAC	2 cut(s)	1264, 2175
BstX2I	RGATCY	4 cut(s)	1142, 1638, 2034, 3156
BstYI	RGATCY	4 cut(s)	1142, 1638, 2034, 3156
BsuRI	GGCC	4 cut(s)	1180, 1733, 2844, 3128
BtgZI	GCGATG	2 cut(s)	2500, 2883
BtrI	CACGTC	1 cut(s)	2245
BtsCI	GGATG	7 cut(s)	505, 783, 898, 1762, 1784, 1864, 2846
BtsI	GCAGTG	2 cut(s)	1017, 2718
BtsIMutI	CAGTG	8 cut(s)	157, 1017, 1110, 1213, 1273, 1426, 2718, 2807
BveI	ACCTGC	2 cut(s)	1388, 1632
Cac8I	GCNNGC	3 cut(s)	1182, 1443, 1695
CciI	TCATGA	1 cut(s)	223
CfoI	GCGC	1 cut(s)	367
Cfr13I	GGNCC	5 cut(s)	1487, 2077, 2842, 2843, 2899
Cfr9I	CCCGGG	1 cut(s)	110
Csp6I	GTAC	2 cut(s)	71, 1900
CspCI	CAANNNNNGTGG	4 cut(s)	2054, 2089, 2928, 2963
CviQI	GTAC	2 cut(s)	71, 1900
DpnI	GATC	9 cut(s)	138, 564, 612, 1144, 1640, 2036, 2717, 2778, 3158
DpnII	GATC	9 cut(s)	136, 562, 610, 1142, 1638, 2034, 2715, 2776, 3156
DriI	GACNNNNNGTC	2 cut(s)	522, 703
Eam1104I	CTCTTC	3 cut(s)	1104, 1152, 1695
Eam1105I	GACNNNNNGTC	2 cut(s)	522, 703
EarI	CTCTTC	3 cut(s)	1104, 1152, 1695
Ecl136II	GAGCTC	1 cut(s)	1327
Eco130I	CCWWGG	2 cut(s)	2265, 2357
Eco147I	AGGCCT	2 cut(s)	1180, 3128
Eco24I	GRGCYC	2 cut(s)	1329, 2846
Eco31I	GGTCTC	3 cut(s)	671, 1358, 1697
Eco32I	GATATC	1 cut(s)	819
Eco47I	GGWCC	3 cut(s)	1487, 2077, 2899
Eco53kI	GAGCTC	1 cut(s)	1327
Eco57I	CTGAAG	2 cut(s)	1719, 2169
Eco88I	CYCGRG	4 cut(s)	110, 1185, 2850, 3006
Eco91I	GGTNACC	1 cut(s)	1544
EcoICRI	GAGCTC	1 cut(s)	1327
EcoO109I	RGGNCCY	3 cut(s)	2077, 2842, 2899
EcoO65I	GGTNACC	1 cut(s)	1544
EcoRII	CCWGG	1 cut(s)	772
EcoRV	GATATC	1 cut(s)	819
EcoT14I	CCWWGG	2 cut(s)	2265, 2357
EcoT22I	ATGCAT	2 cut(s)	1390, 2224
EcoT38I	GRGCYC	2 cut(s)	1329, 2846
ErhI	CCWWGG	2 cut(s)	2265, 2357
FalI	AAGNNNNNCTT	6 cut(s)	1305, 1337, 2258, 2290, 2513, 2545
FaqI	GGGAC	3 cut(s)	230, 1500, 2090
FauI	CCCGC	1 cut(s)	2513
FauNDI	CATATG	1 cut(s)	628
FblI	GTMKAC	1 cut(s)	2381
Fnu4HI	GCNGC	9 cut(s)	43, 558, 657, 854, 1259, 1793, 1881, 2099, 2598
FokI	GGATG	7 cut(s)	512, 790, 905, 1749, 1771, 1871, 2833
FriOI	GRGCYC	2 cut(s)	1329, 2846
Fsp4HI	GCNGC	9 cut(s)	43, 558, 657, 854, 1259, 1793, 1881, 2099, 2598
FspBI	CTAG	9 cut(s)	140, 725, 843, 866, 995, 1956, 2358, 2700, 3071
GlaI	GCGC	1 cut(s)	366
GluI	GCNGC	9 cut(s)	43, 558, 657, 854, 1259, 1793, 1881, 2099, 2598
GsaI	CCCAGC	1 cut(s)	2322
GsuI	CTGGAG	1 cut(s)	396
HaeIII	GGCC	4 cut(s)	1180, 1733, 2844, 3128
HapII	CCGG	4 cut(s)	111, 234, 2625, 3112
HhaI	GCGC	1 cut(s)	367
Hin6I	GCGC	1 cut(s)	365
HinP1I	GCGC	1 cut(s)	365
HincII	GTYRAC	4 cut(s)	1338, 2149, 2215, 2744
HindII	GTYRAC	4 cut(s)	1338, 2149, 2215, 2744
HpaII	CCGG	4 cut(s)	111, 234, 2625, 3112
HphI	GGTGA	8 cut(s)	281, 1127, 1202, 1214, 2079, 2614, 3101, 3128
Hpy166II	GTNNAC	7 cut(s)	1118, 1338, 2149, 2215, 2382, 2622, 2744
Hpy8I	GTNNAC	7 cut(s)	1118, 1338, 2149, 2215, 2382, 2622, 2744
Hpy99I	CGWCG	1 cut(s)	1889
HpyCH4III	ACNGT	9 cut(s)	201, 305, 475, 524, 936, 1455, 1569, 2146, 2996
HpyCH4IV	ACGT	3 cut(s)	730, 1997, 2244
HpyF10VI	GCNNNNNNNGC	7 cut(s)	58, 566, 656, 979, 1169, 1694, 1801
HpySE526I	ACGT	3 cut(s)	730, 1997, 2244
HspAI	GCGC	1 cut(s)	365
KflI	GGGWCCC	1 cut(s)	2077
Kzo9I	GATC	9 cut(s)	136, 562, 610, 1142, 1638, 2034, 2715, 2776, 3156
LmnI	GCTCC	4 cut(s)	22, 1168, 2482, 3074
Lsp1109I	GCAGC	7 cut(s)	544, 643, 840, 1245, 1779, 1867, 2584
LweI	GCATC	5 cut(s)	544, 883, 1771, 1855, 1995
MaeI	CTAG	9 cut(s)	140, 725, 843, 866, 995, 1956, 2358, 2700, 3071
MaeII	ACGT	3 cut(s)	730, 1997, 2244
MaeIII	GTNAC	8 cut(s)	118, 283, 1190, 1414, 1500, 1544, 2785, 3107
MalI	GATC	9 cut(s)	138, 564, 612, 1144, 1640, 2036, 2717, 2778, 3158
MboI	GATC	9 cut(s)	136, 562, 610, 1142, 1638, 2034, 2715, 2776, 3156
MfeI	CAATTG	1 cut(s)	169
MflI	RGATCY	4 cut(s)	1142, 1638, 2034, 3156
MhlI	GDGCHC	6 cut(s)	168, 325, 772, 1329, 2292, 2846
MluI	ACGCGT	1 cut(s)	2968
MlyI	GAGTC	7 cut(s)	305, 398, 1046, 1103, 1991, 2998, 3082
MmeI	TCCRAC	5 cut(s)	771, 1006, 1147, 2432, 2445
Mph1103I	ATGCAT	2 cut(s)	1390, 2224
MseI	TTAA	8 cut(s)	86, 447, 588, 1011, 1457, 2166, 2391, 3026
MslI	CAYNNNNRTG	3 cut(s)	1236, 2997, 3114
MspA1I	CMGCKG	1 cut(s)	2098
MspCI	CTTAAG	1 cut(s)	2165
MspI	CCGG	4 cut(s)	111, 234, 2625, 3112
MspR9I	CCNGG	5 cut(s)	111, 112, 235, 774, 3113
MunI	CAATTG	1 cut(s)	169
Mva1269I	GAATGC	4 cut(s)	195, 865, 1139, 1519
MvaI	CCWGG	1 cut(s)	774
MvnI	CGCG	4 cut(s)	45, 365, 618, 2970
MwoI	GCNNNNNNNGC	7 cut(s)	58, 566, 656, 979, 1169, 1694, 1801
NciI	CCSGG	4 cut(s)	111, 112, 235, 3113
NdeI	CATATG	1 cut(s)	628
NdeII	GATC	9 cut(s)	136, 562, 610, 1142, 1638, 2034, 2715, 2776, 3156
NlaIV	GGNNCC	9 cut(s)	324, 1488, 2078, 2079, 2172, 2658, 2766, 2843, 2844
NmuCI	GTSAC	3 cut(s)	1190, 2785, 3107
NsiI	ATGCAT	2 cut(s)	1390, 2224
NspI	RCATGY	2 cut(s)	1412, 1445
NspV	TTCGAA	1 cut(s)	2398
OliI	CACNNNNGTG	1 cut(s)	3114
PaeI	GCATGC	1 cut(s)	1445
PaeR7I	CTCGAG	1 cut(s)	3006
PagI	TCATGA	1 cut(s)	223
PaqCI	CACCTGC	2 cut(s)	1388, 1632
PceI	AGGCCT	2 cut(s)	1180, 3128
PctI	GAATGC	4 cut(s)	195, 865, 1139, 1519
PfeI	GAWTC	9 cut(s)	289, 419, 440, 544, 1066, 1088, 2278, 3080, 3119
PflFI	GACNNNGTC	2 cut(s)	131, 146
PkrI	GCNGC	9 cut(s)	44, 559, 658, 855, 1260, 1794, 1882, 2100, 2599
PleI	GAGTC	7 cut(s)	304, 398, 1045, 1102, 1990, 2998, 3082
PpsI	GAGTC	7 cut(s)	304, 398, 1045, 1102, 1990, 2998, 3082
PpuMI	RGGWCCY	2 cut(s)	2077, 2899
PshBI	ATTAAT	1 cut(s)	2391
Psp124BI	GAGCTC	1 cut(s)	1329
Psp1406I	AACGTT	1 cut(s)	1997
Psp5II	RGGWCCY	2 cut(s)	2077, 2899
Psp6I	CCWGG	1 cut(s)	772
PspEI	GGTNACC	1 cut(s)	1544
PspFI	CCCAGC	1 cut(s)	2318
PspGI	CCWGG	1 cut(s)	772
PspN4I	GGNNCC	9 cut(s)	324, 1488, 2078, 2079, 2172, 2658, 2766, 2843, 2844
PspOMI	GGGCCC	1 cut(s)	2842
PspPI	GGNCC	5 cut(s)	1487, 2077, 2842, 2843, 2899
PspPPI	RGGWCCY	2 cut(s)	2077, 2899
PsrI	GAACNNNNNNTAC	2 cut(s)	2955, 2987
PstI	CTGCAG	4 cut(s)	661, 1780, 1945, 3054
PsuI	RGATCY	4 cut(s)	1142, 1638, 2034, 3156
PsyI	GACNNNGTC	2 cut(s)	131, 146
RsaI	GTAC	2 cut(s)	72, 1901
RsaNI	GTAC	2 cut(s)	71, 1900
RseI	CAYNNNNRTG	3 cut(s)	1236, 2997, 3114
SacI	GAGCTC	1 cut(s)	1329
SaqAI	TTAA	8 cut(s)	86, 447, 588, 1011, 1457, 2166, 2391, 3026
SatI	GCNGC	9 cut(s)	43, 558, 657, 854, 1259, 1793, 1881, 2099, 2598
Sau3AI	GATC	9 cut(s)	136, 562, 610, 1142, 1638, 2034, 2715, 2776, 3156
Sau96I	GGNCC	5 cut(s)	1487, 2077, 2842, 2843, 2899
SchI	GAGTC	7 cut(s)	305, 398, 1046, 1103, 1991, 2998, 3082
ScrFI	CCNGG	5 cut(s)	111, 112, 235, 774, 3113
SduI	GDGCHC	6 cut(s)	168, 325, 772, 1329, 2292, 2846
SfaNI	GCATC	5 cut(s)	544, 883, 1771, 1855, 1995
SfcI	CTRYAG	6 cut(s)	474, 657, 1776, 1941, 2601, 3050
Sfr274I	CTCGAG	1 cut(s)	3006
SfuI	TTCGAA	1 cut(s)	2398
SinI	GGWCC	3 cut(s)	1487, 2077, 2899
SlaI	CTCGAG	1 cut(s)	3006
SmaI	CCCGGG	1 cut(s)	112
SmiMI	CAYNNNNRTG	3 cut(s)	1236, 2997, 3114
SmlI	CTYRAG	6 cut(s)	1138, 1322, 1892, 2165, 2903, 3006
SmoI	CTYRAG	6 cut(s)	1138, 1322, 1892, 2165, 2903, 3006
SphI	GCATGC	1 cut(s)	1445
SseBI	AGGCCT	2 cut(s)	1180, 3128
SsiI	CCGC	7 cut(s)	43, 116, 350, 616, 1490, 2098, 2506
SspI	AATATT	1 cut(s)	3102
SspMI	CTAG	9 cut(s)	140, 725, 843, 866, 995, 1956, 2358, 2700, 3071
SstI	GAGCTC	1 cut(s)	1329
StuI	AGGCCT	2 cut(s)	1180, 3128
StyD4I	CCNGG	5 cut(s)	109, 110, 233, 772, 3111
StyI	CCWWGG	2 cut(s)	2265, 2357
TaaI	ACNGT	9 cut(s)	201, 305, 475, 524, 936, 1455, 1569, 2146, 2996
TaiI	ACGT	3 cut(s)	733, 2000, 2247
TaqII	GACCGA	2 cut(s)	1868, 2622
TatI	WGTACW	2 cut(s)	70, 1899
TauI	GCSGC	2 cut(s)	45, 2101
TfiI	GAWTC	9 cut(s)	289, 419, 440, 544, 1066, 1088, 2278, 3080, 3119
Tru1I	TTAA	8 cut(s)	86, 447, 588, 1011, 1457, 2166, 2391, 3026
Tru9I	TTAA	8 cut(s)	86, 447, 588, 1011, 1457, 2166, 2391, 3026
TscAI	CASTG	8 cut(s)	157, 1024, 1117, 1220, 1273, 1426, 2718, 2814
TseFI	GTSAC	3 cut(s)	1190, 2785, 3107
TseI	GCWGC	7 cut(s)	557, 656, 853, 1258, 1792, 1880, 2597
Tsp45I	GTSAC	3 cut(s)	1190, 2785, 3107
TspDTI	ATGAA	5 cut(s)	263, 645, 1361, 1787, 2542
TspGWI	ACGGA	5 cut(s)	1060, 1376, 1391, 2399, 2813
TspMI	CCCGGG	1 cut(s)	110
TspRI	CASTG	8 cut(s)	157, 1024, 1117, 1220, 1273, 1426, 2718, 2814
Tth111I	GACNNNGTC	2 cut(s)	131, 146
Vha464I	CTTAAG	1 cut(s)	2165
VpaK11BI	GGWCC	3 cut(s)	1487, 2077, 2899
VspI	ATTAAT	1 cut(s)	2391
XapI	RAATTY	2 cut(s)	941, 1431
XbaI	TCTAGA	1 cut(s)	139
XceI	RCATGY	2 cut(s)	1412, 1445
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1220
XhoI	CTCGAG	1 cut(s)	3006
XmaI	CCCGGG	1 cut(s)	110
XmaJI	CCTAGG	1 cut(s)	2357
XmiI	GTMKAC	1 cut(s)	2381
XspI	CTAG	9 cut(s)	140, 725, 843, 866, 995, 1956, 2358, 2700, 3071
Zsp2I	ATGCAT	2 cut(s)	1390, 2224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.