Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004370

Physical Location & Seq

Genomic Coordinates Forward (+)

20916825 .. 20920306

Gene Structure 3482 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAGCTTGGAAAAGAAGGTGCCTAACTTGAAAGTTTTCACCTACGAACGATTGGATTGGTTAAAAAGAGCATCGTCACTGCCAGCTAATGAGAATCCACTGGAAACAGTGAAGGACCATAGTTTTCATAGTTCGAGTAAGTTACGAGCTACTCCACTGGCTGATGTTGCGATAGATAAGGTTGCTGTCATCGAGTTGCTGTTTCCGTCTGTCTTCAGAGCTGTAGTATCATTGCATCCTGCTGGTTCTATTGACCCAGACGCAGTAGCTTTCTTTTCTCCAGAAGAGGGAGGCAGCTACATTCATGCAAGAGGTTTTTCAGTTTATCATGTGTTTAAACATATCACGGAACATGCTGGTTTGGCCTTGCAGTACTTTCTTGGGGTTCAAGCTGAAACAGCTCTATTTTCCCTTTTGCTCTGGATCTGCAGCTACCAAACTCTATTTACAAAAGTTTGCAGTAAGTGCGAACGACTGCTAGCTATGGACCGACAATCAGCTTTACTGTTGCCTTCGGTTAATCGTCCTTACCGGCAGTTCTCCACATCGAATATATCCTCCAGTTTAAATCTTACCGAGACTTACCATGTAGGTTGTTTTACGGAGGAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko04919 map04919

Pfam Domains

Protein Families

Med27

Protein Analysis

204

Amino Acids

22.88

Weight (kDa)

7.09

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med27	PF11571	107 - 199	1.7e-18	Mediator complex subunit 27

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09180 AT3G09180 AT3G09180
fragaria_vesca	FvH4_6g20290 FvH4_6g20290 FvH4_6g20290 FvH4_6g20290 FvH4_6g20290
malus_domestica	MD14G1038600.v1.1
prunus_persica	Prupe.7G094800_v2.0.a1 Prupe.7G094800_v2.0.a1 Prupe.7G094800_v2.0.a1
pyrus_communis	pycom12g03430
rosa_chinensis	RchiOBHm_Chr1g0331111 RchiOBHm_Chr1g0331121 RchiOBHm_Chr3g0475881
rosa_laevigata	RLG00000023803 RLG00000029753
rosa_multiflora	Rmu_sc0000539.1_g000094
rosa_roxburghii	Rroxscaffold_4G00319450 Rroxscaffold_6G00405760
rosa_rugosa	Rorug01G0093700 Rorug01G0093700 Rorug03G0151900
rosa_samantha	Rh1AG114200 Rh3AG202000 Rh3BG232500 Rh3CG227100 Rh3DG227600
rosa_wichuraiana	Rw1G009280 Rw3G018390 Rw3G018420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	19
AclWI	GGATC	1 cut(s)	431
AcuI	CTGAAG	1 cut(s)	199
AfaI	GTAC	1 cut(s)	374
AfiI	CCNNNNNNNGG	1 cut(s)	287
AgsI	TTSAA	2 cut(s)	31, 389
Alw26I	GTCTC	1 cut(s)	572
AlwI	GGATC	1 cut(s)	431
AoxI	GGCC	1 cut(s)	363
ApeKI	GCWGC	2 cut(s)	294, 429
Asp700I	GAANNNNTTC	1 cut(s)	35
AspS9I	GGNCC	2 cut(s)	115, 487
AsuHPI	GGTGA	1 cut(s)	31
AsuNHI	GCTAGC	1 cut(s)	478
AvaII	GGWCC	2 cut(s)	115, 487
BanI	GGYRCC	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	205
BbvI	GCAGC	2 cut(s)	306, 441
BcoDI	GTCTC	1 cut(s)	572
BfaI	CTAG	1 cut(s)	479
BfmI	CTRYAG	2 cut(s)	222, 427
BisI	GCNGC	2 cut(s)	295, 430
BlsI	GCNGC	2 cut(s)	296, 431
BmcAI	AGTACT	1 cut(s)	374
Bme18I	GGWCC	2 cut(s)	115, 487
BmgT120I	GGNCC	2 cut(s)	115, 487
BmiI	GGNNCC	1 cut(s)	21
BmsI	GCATC	2 cut(s)	80, 244
BmtI	GCTAGC	1 cut(s)	482
BpiI	GAAGAC	1 cut(s)	205
BpmI	CTGGAG	2 cut(s)	264, 544
BsaXI	ACNNNNNCTCC	1 cut(s)	596
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse118I	RCCGGY	1 cut(s)	531
Bse1I	ACTGG	3 cut(s)	105, 162, 561
Bse3DI	GCAATG	1 cut(s)	230
BseGI	GGATG	1 cut(s)	235
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMI	GCAATG	1 cut(s)	230
BseNI	ACTGG	3 cut(s)	105, 162, 561
BseXI	GCAGC	2 cut(s)	306, 441
BshFI	GGCC	1 cut(s)	365
BshNI	GGYRCC	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	532
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	1 cut(s)	572
BsnI	GGCC	1 cut(s)	365
Bsp143I	GATC	1 cut(s)	423
BspANI	GGCC	1 cut(s)	365
BspLI	GGNNCC	1 cut(s)	21
BspMAI	CTGCAG	1 cut(s)	431
BspOI	GCTAGC	1 cut(s)	482
BspPI	GGATC	1 cut(s)	431
BspT107I	GGYRCC	1 cut(s)	19
BsrDI	GCAATG	1 cut(s)	230
BsrFI	RCCGGY	1 cut(s)	531
BsrI	ACTGG	3 cut(s)	105, 162, 561
BssAI	RCCGGY	1 cut(s)	531
BssMI	GATC	1 cut(s)	423
Bst4CI	ACNGT	2 cut(s)	109, 507
Bst6I	CTCTTC	1 cut(s)	279
BstAPI	GCANNNNNTGC	1 cut(s)	465
BstC8I	GCNNGC	2 cut(s)	84, 480
BstF5I	GGATG	1 cut(s)	235
BstKTI	GATC	1 cut(s)	426
BstMAI	GTCTC	1 cut(s)	572
BstMBI	GATC	1 cut(s)	423
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 362, 398, 465
BstNSI	RCATGY	1 cut(s)	356
BstSFI	CTRYAG	2 cut(s)	222, 427
BstV1I	GCAGC	2 cut(s)	306, 441
BstV2I	GAAGAC	1 cut(s)	205
BstX2I	RGATCY	1 cut(s)	423
BstYI	RGATCY	1 cut(s)	423
BsuRI	GGCC	1 cut(s)	365
BtsCI	GGATG	1 cut(s)	235
BtsI	GCAGTG	1 cut(s)	77
BtsIMutI	CAGTG	4 cut(s)	77, 98, 114, 155
Cac8I	GCNNGC	2 cut(s)	84, 480
Cfr10I	RCCGGY	1 cut(s)	531
Cfr13I	GGNCC	2 cut(s)	115, 487
CseI	GACGC	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	373
CviAII	CATG	4 cut(s)	305, 329, 353, 587
CviQI	GTAC	1 cut(s)	373
DpnI	GATC	1 cut(s)	425
DpnII	GATC	1 cut(s)	423
DraI	TTTAAA	2 cut(s)	337, 567
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Eco47I	GGWCC	2 cut(s)	115, 487
Eco57I	CTGAAG	1 cut(s)	199
FaeI	CATG	4 cut(s)	308, 332, 356, 590
FaiI	YATR	9 cut(s)	120, 129, 306, 330, 342, 354, 485, 554, 588
FatI	CATG	4 cut(s)	304, 328, 352, 586
Fnu4HI	GCNGC	2 cut(s)	295, 430
FokI	GGATG	1 cut(s)	222
Fsp4HI	GCNGC	2 cut(s)	295, 430
FspBI	CTAG	1 cut(s)	479
GluI	GCNGC	2 cut(s)	295, 430
GsuI	CTGGAG	2 cut(s)	264, 544
HaeIII	GGCC	1 cut(s)	365
HapII	CCGG	1 cut(s)	532
HgaI	GACGC	1 cut(s)	269
Hin1II	CATG	4 cut(s)	308, 332, 356, 590
HinfI	GANTC	1 cut(s)	94
HpaII	CCGG	1 cut(s)	532
HphI	GGTGA	1 cut(s)	31
Hpy188I	TCNGA	1 cut(s)	218
Hpy188III	TCNNGA	2 cut(s)	281, 421
HpyAV	CCTTC	3 cut(s)	10, 106, 522
HpyCH4III	ACNGT	2 cut(s)	109, 507
HpyCH4V	TGCA	5 cut(s)	235, 308, 370, 429, 459
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 362, 398, 465
Hsp92II	CATG	4 cut(s)	308, 332, 356, 590
Kzo9I	GATC	1 cut(s)	423
Lsp1109I	GCAGC	2 cut(s)	306, 441
LweI	GCATC	2 cut(s)	80, 244
MaeI	CTAG	1 cut(s)	479
MaeIII	GTNAC	2 cut(s)	75, 141
MalI	GATC	1 cut(s)	425
MboI	GATC	1 cut(s)	423
MboII	GAAGA	2 cut(s)	205, 296
MflI	RGATCY	1 cut(s)	423
MnlI	CCTC	5 cut(s)	280, 284, 305, 568, 598
MroXI	GAANNNNTTC	1 cut(s)	35
MseI	TTAA	4 cut(s)	62, 336, 519, 566
MspI	CCGG	1 cut(s)	532
MssI	GTTTAAAC	1 cut(s)	337
MwoI	GCNNNNNNNGC	4 cut(s)	167, 362, 398, 465
NdeII	GATC	1 cut(s)	423
NheI	GCTAGC	1 cut(s)	478
NlaIII	CATG	4 cut(s)	308, 332, 356, 590
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	75
NspI	RCATGY	1 cut(s)	356
PdmI	GAANNNNTTC	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	94
PkrI	GCNGC	2 cut(s)	296, 431
PmeI	GTTTAAAC	1 cut(s)	337
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	2 cut(s)	115, 487
PstI	CTGCAG	1 cut(s)	431
PsuI	RGATCY	1 cut(s)	423
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
SaqAI	TTAA	4 cut(s)	62, 336, 519, 566
SatI	GCNGC	2 cut(s)	295, 430
Sau3AI	GATC	1 cut(s)	423
Sau96I	GGNCC	2 cut(s)	115, 487
ScaI	AGTACT	1 cut(s)	374
SfaNI	GCATC	2 cut(s)	80, 244
SfcI	CTRYAG	2 cut(s)	222, 427
SinI	GGWCC	2 cut(s)	115, 487
SspMI	CTAG	1 cut(s)	479
TaaI	ACNGT	2 cut(s)	109, 507
TaqI	TCGA	3 cut(s)	134, 192, 548
TaqII	GACCGA	1 cut(s)	504
TatI	WGTACW	1 cut(s)	372
TfiI	GAWTC	1 cut(s)	94
Tru1I	TTAA	4 cut(s)	62, 336, 519, 566
Tru9I	TTAA	4 cut(s)	62, 336, 519, 566
TscAI	CASTG	4 cut(s)	84, 105, 114, 162
TseFI	GTSAC	1 cut(s)	75
TseI	GCWGC	2 cut(s)	294, 429
Tsp45I	GTSAC	1 cut(s)	75
TspDTI	ATGAA	2 cut(s)	116, 293
TspGWI	ACGGA	2 cut(s)	195, 362
TspRI	CASTG	4 cut(s)	84, 105, 114, 162
VpaK11BI	GGWCC	2 cut(s)	115, 487
XceI	RCATGY	1 cut(s)	356
XmnI	GAANNNNTTC	1 cut(s)	35
XspI	CTAG	1 cut(s)	479
ZrmI	AGTACT	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.