RchiOBHm_Chr1g0332771

Hippocampus abundant transcript-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0016382
Physical Location & Seq
Forward (+)
24587258 .. 24592352
5095 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1326 bp
ATGGCTTGGAAGACTAGTTATGGTGGTTTCAAAGAGATGAGGCCATTGTTTCACTTGCTCTTGCCTCTGTGTCTCCATTGGGTCGCTGAAGAAATGACCGTTTCTGTCCTTGTTGATGTTACTACTACTGCTCTTTGCCCCGCCCACTCCACCTGTTCTCAACCTATCTATATCACTGGTATTCAACAAACGATTGTTGGACTTTTCAAGATGGTGGTGTTACCAATTCTTGGTCAACTCGCAGATGAGAATGGCCGTAAACCAGTGCTCCTTCTTACTGTGTCAACAACCATATTCCCTTTTGCATTACTTGCCTGGAATCAGTCCAAGGGATTTGTGTATGCTTATTATGTGCTTCGTACAATTTCATATATTCTGAGTCAGGGGAGTATATTCTGCATCGCTGTTGCTTATGTGGCAGATGTTGTCAGCGAAAATAATAGGGCTGCAGCATTTAGTTGGATCACAGGTCTCTTCTCTGCATCGCATGTGTTGGGAAATGTTCTGGCCCGTTTTCTTCCCGAGAAGTACATTTTCTATGTTTCAATAGCACTCCTGATCTTTTGTCCAATTTATATGCAAATATTTTTGGTTGAGACAGCTAAAAAATTGGCCCCTCAAATGGACCAAGACTTGTCTTGCCTGACCAAGAGAGTTGCGATTATTCATAAACGTTATGTTTCAATGAGAGATGCTGCAACAATAGTTATGAGCAGTTCAACATTGAGGAGCATTTCTTTGGTTTCCTTCTTCTATGAGATGGGAATGTCTGGCATCAGCACTGTATTATTGTACTATATGAAGGCAGCTTTTGGTTTTGACAAAAATCAATTCTCAGAGATCCTGATGATGGTGGGAATAGGCTCAATTGTCTCTCAGATGTTGGTGCTTCCATTAATCAATCCATTAGTTGGAGAGAAAGTGATACTATGCATATCCTTGTGTGCGTCAATAGCTTATGCAGTGCTCTATGGCTTGGCTTGGGCTTCTTGGGTACCATACTTAAGTGCTTCATTTGGAGTCATCTACATCCTTGTGAAACCTTCCACTTTTGCAATTATTTCAAAAGCATCAAGCTTATCTGATCAGGGAAAGGTGCAAGGATTTATTGCTGGTGTGCAGTCCATATCAAGCCTGCTATCTCCAGTTGCCATGAGTCCATTGACATCATGGTTTCTATCTAGCAGTGCCCCTTTCGATTGCAAAGGTTTTAGCATAATATGTGCATCCATATGCATGGTGATATCCCTTTGTTATGCCTGCAAGCTTAAACCTGAATCATGCTCTACAGACGACACTGAAGCACCGCTTCTGACTGATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

441

Amino Acids

48.29

Weight (kDa)

8.3

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 59 - 382 4.5e-24 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016382)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g05740
prunus_persica Prupe.2G079900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0332771
rosa_laevigata RLG00000029645
rosa_multiflora Rmu_sc0004239.1_g000022
rosa_roxburghii Rroxscaffold_4G00317990
rosa_rugosa Rorug01G0104000 Rorug01G0104100 Rorug01G0104100 Rorug01G0104200
rosa_samantha Rh1AG128100 Rh1BG097300 Rh1CG121800 Rh1DG133800
rosa_wichuraiana Rw1G010530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 994
AccB1I GGYRCC 1 cut(s) 994
AccB7I CCANNNNNTGG 2 cut(s) 230, 911
AciI CCGC 2 cut(s) 141, 1307
AclI AACGTT 1 cut(s) 673
AclWI GGATC 2 cut(s) 470, 835
AcoI YGGCCR 1 cut(s) 253
AcuI CTGAAG 2 cut(s) 108, 1320
AfaI GTAC 4 cut(s) 361, 530, 794, 996
AfiI CCNNNNNNNGG 4 cut(s) 230, 622, 850, 911
AflII CTTAAG 1 cut(s) 1003
AgsI TTSAA 7 cut(s) 31, 185, 208, 546, 684, 720, 1065
AhlI ACTAGT 1 cut(s) 14
AjnI CCWGG 1 cut(s) 314
AluBI AGCT 5 cut(s) 602, 809, 956, 1077, 1267
AluI AGCT 5 cut(s) 602, 809, 956, 1077, 1267
Alw21I GWGCWC 2 cut(s) 270, 969
Alw26I GTCTC 4 cut(s) 77, 476, 590, 877
AlwI GGATC 2 cut(s) 470, 835
Ama87I CYCGRG 1 cut(s) 521
AoxI GGCC 4 cut(s) 41, 253, 507, 612
ApeKI GCWGC 4 cut(s) 446, 449, 695, 806
AseI ATTAAT 1 cut(s) 896
Asp718I GGTACC 1 cut(s) 994
AspS9I GGNCC 3 cut(s) 508, 613, 625
AsuHPI GGTGA 1 cut(s) 1252
AvaI CYCGRG 1 cut(s) 521
AvaII GGWCC 1 cut(s) 625
BaeGI GKGCMC 1 cut(s) 1192
BanI GGYRCC 1 cut(s) 994
BbsI GAAGAC 1 cut(s) 17
Bbv12I GWGCWC 2 cut(s) 270, 969
BbvI GCAGC 4 cut(s) 433, 461, 682, 818
BccI CCATC 3 cut(s) 205, 754, 844
BceAI ACGGC 1 cut(s) 240
BciT130I CCWGG 1 cut(s) 316
BclI TGATCA 1 cut(s) 1084
BcoDI GTCTC 4 cut(s) 77, 476, 590, 877
BcuI ACTAGT 1 cut(s) 14
BfaI CTAG 2 cut(s) 15, 1182
BfmI CTRYAG 2 cut(s) 447, 1287
BfrI CTTAAG 1 cut(s) 1003
BisI GCNGC 4 cut(s) 447, 450, 696, 807
BlsI GCNGC 4 cut(s) 448, 451, 697, 808
Bme1390I CCNGG 1 cut(s) 316
Bme18I GGWCC 1 cut(s) 625
BmeT110I CYCGRG 1 cut(s) 521
BmgT120I GGNCC 3 cut(s) 508, 613, 625
BmiI GGNNCC 2 cut(s) 615, 996
BmrFI CCNGG 1 cut(s) 316
BmsI GCATC 6 cut(s) 408, 491, 682, 783, 1079, 1235
BpiI GAAGAC 1 cut(s) 17
BpmI CTGGAG 1 cut(s) 1128
BsaI GGTCTC 1 cut(s) 476
BsaJI CCNNGG 1 cut(s) 327
BsaXI ACNNNNNCTCC 4 cut(s) 252, 282, 906, 936
Bsc4I CCNNNNNNNGG 4 cut(s) 230, 622, 850, 911
Bse1I ACTGG 3 cut(s) 181, 263, 1145
BseBI CCWGG 1 cut(s) 316
BseDI CCNNGG 1 cut(s) 327
BseGI GGATG 2 cut(s) 1029, 1226
BseLI CCNNNNNNNGG 4 cut(s) 230, 622, 850, 911
BseMII CTCAG 3 cut(s) 368, 849, 890
BseNI ACTGG 3 cut(s) 181, 263, 1145
BseRI GAGGAG 1 cut(s) 742
BseSI GKGCMC 1 cut(s) 1192
BseXI GCAGC 4 cut(s) 433, 461, 682, 818
BsgI GTGCAG 1 cut(s) 1139
BshFI GGCC 4 cut(s) 43, 255, 509, 614
BshNI GGYRCC 1 cut(s) 994
BsiHKAI GWGCWC 2 cut(s) 270, 969
BsiHKCI CYCGRG 1 cut(s) 521
BslI CCNNNNNNNGG 4 cut(s) 230, 622, 850, 911
BsmAI GTCTC 4 cut(s) 77, 476, 590, 877
BsnI GGCC 4 cut(s) 43, 255, 509, 614
Bso31I GGTCTC 1 cut(s) 476
BsoBI CYCGRG 1 cut(s) 521
Bsp1286I GDGCHC 3 cut(s) 270, 969, 1192
Bsp143I GATC 4 cut(s) 462, 558, 840, 1084
BspACI CCGC 2 cut(s) 141, 1307
BspANI GGCC 4 cut(s) 43, 255, 509, 614
BspCNI CTCAG 3 cut(s) 369, 848, 889
BspLI GGNNCC 2 cut(s) 615, 996
BspMAI CTGCAG 1 cut(s) 451
BspPI GGATC 2 cut(s) 470, 835
BspT107I GGYRCC 1 cut(s) 994
BspTI CTTAAG 1 cut(s) 1003
BspTNI GGTCTC 1 cut(s) 476
BsrI ACTGG 3 cut(s) 181, 263, 1145
BssECI CCNNGG 1 cut(s) 327
BssMI GATC 4 cut(s) 462, 558, 840, 1084
BssT1I CCWWGG 1 cut(s) 327
Bst2UI CCWGG 1 cut(s) 316
Bst4CI ACNGT 3 cut(s) 100, 280, 784
Bst6I CTCTTC 1 cut(s) 479
BstAFI CTTAAG 1 cut(s) 1003
BstAPI GCANNNNNTGC 1 cut(s) 311
BstC8I GCNNGC 3 cut(s) 1136, 1261, 1265
BstDEI CTNAG 3 cut(s) 377, 835, 876
BstF5I GGATG 2 cut(s) 1029, 1226
BstKTI GATC 4 cut(s) 465, 561, 843, 1087
BstMAI GTCTC 4 cut(s) 77, 476, 590, 877
BstMBI GATC 4 cut(s) 462, 558, 840, 1084
BstMWI GCNNNNNNNGC 3 cut(s) 311, 416, 953
BstNI CCWGG 1 cut(s) 316
BstNSI RCATGY 1 cut(s) 491
BstSCI CCNGG 1 cut(s) 314
BstSFI CTRYAG 2 cut(s) 447, 1287
BstSLI GKGCMC 1 cut(s) 1192
BstV1I GCAGC 4 cut(s) 433, 461, 682, 818
BstV2I GAAGAC 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 840
BstXI CCANNNNNNTGG 1 cut(s) 1237
BstYI RGATCY 1 cut(s) 840
BsuRI GGCC 4 cut(s) 43, 255, 509, 614
BtgZI GCGATG 2 cut(s) 385, 468
BtsCI GGATG 2 cut(s) 1029, 1226
BtsI GCAGTG 2 cut(s) 969, 1192
BtsIMutI CAGTG 6 cut(s) 174, 270, 780, 969, 1192, 1296
Cac8I GCNNGC 3 cut(s) 1136, 1261, 1265
Cfr13I GGNCC 3 cut(s) 508, 613, 625
CseI GACGC 1 cut(s) 936
Csp6I GTAC 4 cut(s) 360, 529, 793, 995
CviAII CATG 5 cut(s) 488, 1153, 1170, 1237, 1281
CviQI GTAC 4 cut(s) 360, 529, 793, 995
DdeI CTNAG 3 cut(s) 377, 835, 876
DpnI GATC 4 cut(s) 464, 560, 842, 1086
DpnII GATC 4 cut(s) 462, 558, 840, 1084
EaeI YGGCCR 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 479
EarI CTCTTC 1 cut(s) 479
Eco130I CCWWGG 1 cut(s) 327
Eco31I GGTCTC 1 cut(s) 476
Eco32I GATATC 1 cut(s) 1245
Eco47I GGWCC 1 cut(s) 625
Eco57I CTGAAG 2 cut(s) 108, 1320
Eco88I CYCGRG 1 cut(s) 521
EcoRII CCWGG 1 cut(s) 314
EcoRV GATATC 1 cut(s) 1245
EcoT14I CCWWGG 1 cut(s) 327
EcoT22I ATGCAT 2 cut(s) 935, 1238
ErhI CCWWGG 1 cut(s) 327
FaeI CATG 5 cut(s) 491, 1156, 1173, 1240, 1284
FalI AAGNNNNNCTT 2 cut(s) 1293, 1325
FatI CATG 5 cut(s) 487, 1152, 1169, 1236, 1280
FauI CCCGC 1 cut(s) 148
FauNDI CATATG 1 cut(s) 1232
FbaI TGATCA 1 cut(s) 1084
Fnu4HI GCNGC 4 cut(s) 447, 450, 696, 807
FokI GGATG 2 cut(s) 1016, 1213
Fsp4HI GCNGC 4 cut(s) 447, 450, 696, 807
FspBI CTAG 2 cut(s) 15, 1182
GluI GCNGC 4 cut(s) 447, 450, 696, 807
GsuI CTGGAG 1 cut(s) 1128
HaeIII GGCC 4 cut(s) 43, 255, 509, 614
HgaI GACGC 1 cut(s) 936
Hin1II CATG 5 cut(s) 491, 1156, 1173, 1240, 1284
HincII GTYRAC 2 cut(s) 236, 285
HindII GTYRAC 2 cut(s) 236, 285
HindIII AAGCTT 2 cut(s) 1075, 1265
HinfI GANTC 5 cut(s) 319, 379, 1020, 1156, 1277
HphI GGTGA 1 cut(s) 1252
Hpy166II GTNNAC 3 cut(s) 236, 260, 285
Hpy188I TCNGA 5 cut(s) 378, 838, 879, 1084, 1314
Hpy188III TCNNGA 4 cut(s) 208, 521, 556, 844
Hpy8I GTNNAC 3 cut(s) 236, 260, 285
HpyAV CCTTC 4 cut(s) 281, 757, 796, 1053
HpyCH4III ACNGT 3 cut(s) 100, 280, 784
HpyCH4IV ACGT 1 cut(s) 673
HpyF10VI GCNNNNNNNGC 3 cut(s) 311, 416, 953
HpyF3I CTNAG 3 cut(s) 377, 835, 876
HpySE526I ACGT 1 cut(s) 673
Hsp92II CATG 5 cut(s) 491, 1156, 1173, 1240, 1284
KpnI GGTACC 1 cut(s) 998
Ksp22I TGATCA 1 cut(s) 1084
Kzo9I GATC 4 cut(s) 462, 558, 840, 1084
LmnI GCTCC 2 cut(s) 273, 729
Lsp1109I GCAGC 4 cut(s) 433, 461, 682, 818
LweI GCATC 6 cut(s) 408, 491, 682, 783, 1079, 1235
MaeI CTAG 2 cut(s) 15, 1182
MaeII ACGT 1 cut(s) 673
MaeIII GTNAC 2 cut(s) 118, 219
MalI GATC 4 cut(s) 464, 560, 842, 1086
MboI GATC 4 cut(s) 462, 558, 840, 1084
MboII GAAGA 5 cut(s) 22, 101, 466, 509, 742
MfeI CAATTG 1 cut(s) 867
MflI RGATCY 1 cut(s) 840
MhlI GDGCHC 3 cut(s) 270, 969, 1192
MluCI AATT 7 cut(s) 225, 363, 570, 608, 830, 867, 1056
MlyI GAGTC 3 cut(s) 388, 1029, 1165
MmeI TCCRAC 3 cut(s) 178, 440, 892
MnlI CCTC 4 cut(s) 33, 75, 627, 720
Mph1103I ATGCAT 2 cut(s) 935, 1238
MseI TTAA 3 cut(s) 896, 1004, 1269
MslI CAYNNNNRTG 3 cut(s) 1034, 1231, 1235
MspCI CTTAAG 1 cut(s) 1003
MspR9I CCNGG 1 cut(s) 316
MunI CAATTG 1 cut(s) 867
MvaI CCWGG 1 cut(s) 316
MwoI GCNNNNNNNGC 3 cut(s) 311, 416, 953
NdeI CATATG 1 cut(s) 1232
NdeII GATC 4 cut(s) 462, 558, 840, 1084
NlaIII CATG 5 cut(s) 491, 1156, 1173, 1240, 1284
NlaIV GGNNCC 2 cut(s) 615, 996
NsiI ATGCAT 2 cut(s) 935, 1238
NspI RCATGY 1 cut(s) 491
PfeI GAWTC 2 cut(s) 319, 1277
PflMI CCANNNNNTGG 2 cut(s) 230, 911
PkrI GCNGC 4 cut(s) 448, 451, 697, 808
PleI GAGTC 3 cut(s) 387, 1028, 1164
PpsI GAGTC 3 cut(s) 387, 1028, 1164
PshBI ATTAAT 1 cut(s) 896
Psp1406I AACGTT 1 cut(s) 673
Psp6I CCWGG 1 cut(s) 314
PspGI CCWGG 1 cut(s) 314
PspN4I GGNNCC 2 cut(s) 615, 996
PspPI GGNCC 3 cut(s) 508, 613, 625
PstI CTGCAG 1 cut(s) 451
PsuI RGATCY 1 cut(s) 840
RsaI GTAC 4 cut(s) 361, 530, 794, 996
RsaNI GTAC 4 cut(s) 360, 529, 793, 995
RseI CAYNNNNRTG 3 cut(s) 1034, 1231, 1235
SaqAI TTAA 3 cut(s) 896, 1004, 1269
SatI GCNGC 4 cut(s) 447, 450, 696, 807
Sau3AI GATC 4 cut(s) 462, 558, 840, 1084
Sau96I GGNCC 3 cut(s) 508, 613, 625
SchI GAGTC 3 cut(s) 388, 1029, 1165
ScrFI CCNGG 1 cut(s) 316
SduI GDGCHC 3 cut(s) 270, 969, 1192
SfaNI GCATC 6 cut(s) 408, 491, 682, 783, 1079, 1235
SfcI CTRYAG 2 cut(s) 447, 1287
SinI GGWCC 1 cut(s) 625
SmiMI CAYNNNNRTG 3 cut(s) 1034, 1231, 1235
SmlI CTYRAG 1 cut(s) 1003
SmoI CTYRAG 1 cut(s) 1003
SpeI ACTAGT 1 cut(s) 14
Sse9I AATT 7 cut(s) 225, 363, 570, 608, 830, 867, 1056
SsiI CCGC 2 cut(s) 141, 1307
SspI AATATT 1 cut(s) 585
SspMI CTAG 2 cut(s) 15, 1182
StyD4I CCNGG 1 cut(s) 314
StyI CCWWGG 1 cut(s) 327
TaaI ACNGT 3 cut(s) 100, 280, 784
TaiI ACGT 1 cut(s) 676
TaqI TCGA 1 cut(s) 1197
TasI AATT 7 cut(s) 225, 363, 570, 608, 830, 867, 1056
TatI WGTACW 2 cut(s) 528, 792
TfiI GAWTC 2 cut(s) 319, 1277
Tru1I TTAA 3 cut(s) 896, 1004, 1269
Tru9I TTAA 3 cut(s) 896, 1004, 1269
TscAI CASTG 6 cut(s) 181, 270, 787, 969, 1192, 1303
TseI GCWGC 4 cut(s) 446, 449, 695, 806
TspDTI ATGAA 4 cut(s) 357, 656, 815, 1002
TspRI CASTG 6 cut(s) 181, 270, 787, 969, 1192, 1303
Van91I CCANNNNNTGG 2 cut(s) 230, 911
Vha464I CTTAAG 1 cut(s) 1003
VpaK11BI GGWCC 1 cut(s) 625
VspI ATTAAT 1 cut(s) 896
XceI RCATGY 1 cut(s) 491
XcmI CCANNNNNNNNNTGG 1 cut(s) 1167
XspI CTAG 2 cut(s) 15, 1182
Zsp2I ATGCAT 2 cut(s) 935, 1238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.