Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017409

Physical Location & Seq

Genomic Coordinates Reverse (-)

28179705 .. 28180789

Gene Structure 1085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGGGTGCGTCGCCAGCGGTGTCTTGTCACTCATATTACTCATCTGCATTCTCTGGAAATTTCTGGTGTTCCATAATCCCCAAAACGCAGAATTCCAGATCGAGTCGGCGACCGTGGCCGGACTAAAGGTTGATGGCTCTATGTCAAGTGGCACATGGGATTTCACCCTTGTCGCCACAAATCCCAACAAGAAGGTCAGCATCACCTGTGACACCATCGAGGCCTCCCTATTCAAGCAGTACATACCCTACTACGCCACGAACCGGCTGCCTTCCTTGTTTATAAACTCCTCCAGTCACAACCGTTTCAATTTCAAATTGGGTTTAGTCAGCCACTGTATCGATGCTGATGACGCCATTGAAATCTTTGAAGAAAAGACCACTCGAGGTTTGGTCACTTTTAAGCTCTGGCTGGTGGTAGACTTTACTTATAGGACTAAGTTTTGGTATGTCTGGGATGTAAAAGATTCCGGCTTAGTTCTGGACATCACCTGTGAGCCTGTTCAATTTGTTTTTGCCCCAAATAATGACACTGGAATCTTTAGAGGTCAGTCAGCTACATGCCACGAAGGAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

192

Amino Acids

21.57

Weight (kDa)

5.5

Isoelectric Point (pI)

32.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017409)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0336471
rosa_laevigata	RLG00000029361 RLG00000029362 RLG00000029364 RLG00000029367
rosa_multiflora	Rmu_sc0001981.1_g000028 Rmu_sc0001981.1_g000047
rosa_roxburghii	Rroxscaffold_4G00315390 Rroxscaffold_4G00315550 Rroxscaffold_4G00315560 Rroxscaffold_4G00315620
rosa_rugosa	Rorug04G0097400
rosa_samantha	Rh1BG114700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	284
AccI	GTMKAC	1 cut(s)	420
AciI	CCGC	1 cut(s)	18
AcoI	YGGCCR	1 cut(s)	117
AcsI	RAATTY	3 cut(s)	59, 92, 573
AcyI	GRCGYC	1 cut(s)	354
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	264
AgsI	TTSAA	6 cut(s)	235, 310, 316, 362, 371, 506
AluBI	AGCT	2 cut(s)	406, 557
AluI	AGCT	2 cut(s)	406, 557
AlwNI	CAGNNNCTG	1 cut(s)	336
Ama87I	CYCGRG	1 cut(s)	384
AoxI	GGCC	2 cut(s)	117, 222
ApeKI	GCWGC	1 cut(s)	268
ApoI	RAATTY	3 cut(s)	59, 92, 573
AsuHPI	GGTGA	3 cut(s)	157, 196, 481
AvaI	CYCGRG	1 cut(s)	384
BbvI	GCAGC	1 cut(s)	255
BccI	CCATC	2 cut(s)	128, 224
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BisI	GCNGC	1 cut(s)	269
BlsI	GCNGC	1 cut(s)	270
BmeT110I	CYCGRG	1 cut(s)	384
BmsI	GCATC	2 cut(s)	210, 334
BpmI	CTGGAG	1 cut(s)	277
Bsa29I	ATCGAT	1 cut(s)	342
BsaHI	GRCGYC	1 cut(s)	354
BsaJI	CCNNGG	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	1 cut(s)	264
Bse118I	RCCGGY	1 cut(s)	264
Bse1I	ACTGG	2 cut(s)	294, 538
BseCI	ATCGAT	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	1 cut(s)	463
BseLI	CCNNNNNNNGG	1 cut(s)	264
BseNI	ACTGG	2 cut(s)	294, 538
BseRI	GAGGAG	1 cut(s)	280
BseXI	GCAGC	1 cut(s)	255
Bsh1285I	CGRYCG	1 cut(s)	114
BshFI	GGCC	2 cut(s)	119, 224
BshVI	ATCGAT	1 cut(s)	342
BsiEI	CGRYCG	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	384
BsiSI	CCGG	3 cut(s)	120, 265, 471
BslI	CCNNNNNNNGG	1 cut(s)	264
BsmI	GAATGC	1 cut(s)	48
BsnI	GGCC	2 cut(s)	119, 224
BsoBI	CYCGRG	1 cut(s)	384
Bsp143I	GATC	1 cut(s)	99
BspACI	CCGC	1 cut(s)	18
BspANI	GGCC	2 cut(s)	119, 224
BspDI	ATCGAT	1 cut(s)	342
BsrFI	RCCGGY	1 cut(s)	264
BsrI	ACTGG	2 cut(s)	294, 538
BssAI	RCCGGY	1 cut(s)	264
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	1 cut(s)	99
BssNI	GRCGYC	1 cut(s)	354
Bst4CI	ACNGT	3 cut(s)	115, 305, 338
BstACI	GRCGYC	1 cut(s)	354
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	2 cut(s)	438, 475
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	463
BstKTI	GATC	1 cut(s)	102
BstMBI	GATC	1 cut(s)	99
BstMCI	CGRYCG	1 cut(s)	114
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 116, 353
BstNSI	RCATGY	1 cut(s)	564
BstV1I	GCAGC	1 cut(s)	255
Bsu15I	ATCGAT	1 cut(s)	342
BsuRI	GGCC	2 cut(s)	119, 224
BsuTUI	ATCGAT	1 cut(s)	342
BtgI	CCRYGG	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	463
BtsIMutI	CAGTG	2 cut(s)	334, 531
Cac8I	GCNNGC	1 cut(s)	16
CaiI	CAGNNNCTG	1 cut(s)	336
Cfr10I	RCCGGY	1 cut(s)	264
ClaI	ATCGAT	1 cut(s)	342
CseI	GACGC	1 cut(s)	362
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	2 cut(s)	156, 561
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	2 cut(s)	438, 475
DpnI	GATC	1 cut(s)	101
DpnII	GATC	1 cut(s)	99
EaeI	YGGCCR	1 cut(s)	117
Eco147I	AGGCCT	1 cut(s)	224
Eco88I	CYCGRG	1 cut(s)	384
EcoRI	GAATTC	1 cut(s)	92
FaeI	CATG	2 cut(s)	159, 564
FaiI	YATR	9 cut(s)	35, 75, 143, 157, 245, 284, 432, 450, 562
FatI	CATG	2 cut(s)	155, 560
FblI	GTMKAC	1 cut(s)	420
Fnu4HI	GCNGC	1 cut(s)	269
FokI	GGATG	1 cut(s)	470
Fsp4HI	GCNGC	1 cut(s)	269
GluI	GCNGC	1 cut(s)	269
GsuI	CTGGAG	1 cut(s)	277
HaeIII	GGCC	2 cut(s)	119, 224
HapII	CCGG	3 cut(s)	120, 265, 471
HgaI	GACGC	1 cut(s)	362
Hin1I	GRCGYC	1 cut(s)	354
Hin1II	CATG	2 cut(s)	159, 564
HinfI	GANTC	3 cut(s)	104, 467, 537
HpaII	CCGG	3 cut(s)	120, 265, 471
HphI	GGTGA	3 cut(s)	157, 196, 481
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188III	TCNNGA	3 cut(s)	55, 97, 482
Hpy8I	GTNNAC	1 cut(s)	421
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	3 cut(s)	187, 282, 563
HpyCH4III	ACNGT	3 cut(s)	115, 305, 338
HpyCH4V	TGCA	1 cut(s)	48
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 116, 353
HpyF3I	CTNAG	2 cut(s)	438, 475
Hsp92I	GRCGYC	1 cut(s)	354
Hsp92II	CATG	2 cut(s)	159, 564
Kzo9I	GATC	1 cut(s)	99
Lsp1109I	GCAGC	1 cut(s)	255
LweI	GCATC	2 cut(s)	210, 334
MaeIII	GTNAC	4 cut(s)	27, 209, 296, 394
MalI	GATC	1 cut(s)	101
MboI	GATC	1 cut(s)	99
MboII	GAAGA	1 cut(s)	383
MluCI	AATT	6 cut(s)	59, 92, 310, 317, 506, 573
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	5 cut(s)	214, 235, 301, 380, 539
MseI	TTAA	1 cut(s)	402
MspA1I	CMGCKG	1 cut(s)	18
MspI	CCGG	3 cut(s)	120, 265, 471
Mva1269I	GAATGC	1 cut(s)	48
MwoI	GCNNNNNNNGC	3 cut(s)	15, 116, 353
NdeII	GATC	1 cut(s)	99
NlaIII	CATG	2 cut(s)	159, 564
NmuCI	GTSAC	4 cut(s)	27, 209, 296, 394
NspI	RCATGY	1 cut(s)	564
PaeR7I	CTCGAG	1 cut(s)	384
PceI	AGGCCT	1 cut(s)	224
PctI	GAATGC	1 cut(s)	48
PfeI	GAWTC	2 cut(s)	467, 537
PkrI	GCNGC	1 cut(s)	270
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PsiI	TTATAA	1 cut(s)	284
PspXI	VCTCGAGB	1 cut(s)	384
PstNI	CAGNNNCTG	1 cut(s)	336
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	1 cut(s)	269
Sau3AI	GATC	1 cut(s)	99
SchI	GAGTC	1 cut(s)	113
SetI	ASST	8 cut(s)	132, 198, 209, 391, 408, 494, 550, 559
SfaNI	GCATC	2 cut(s)	210, 334
Sfr274I	CTCGAG	1 cut(s)	384
SlaI	CTCGAG	1 cut(s)	384
SmlI	CTYRAG	1 cut(s)	384
SmoI	CTYRAG	1 cut(s)	384
Sse9I	AATT	6 cut(s)	59, 92, 310, 317, 506, 573
SseBI	AGGCCT	1 cut(s)	224
SsiI	CCGC	1 cut(s)	18
StuI	AGGCCT	1 cut(s)	224
TaaI	ACNGT	3 cut(s)	115, 305, 338
TaqI	TCGA	4 cut(s)	102, 219, 342, 385
TasI	AATT	6 cut(s)	59, 92, 310, 317, 506, 573
TatI	WGTACW	1 cut(s)	240
TfiI	GAWTC	2 cut(s)	467, 537
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	2 cut(s)	341, 538
TseFI	GTSAC	4 cut(s)	27, 209, 296, 394
TseI	GCWGC	1 cut(s)	268
Tsp45I	GTSAC	4 cut(s)	27, 209, 296, 394
TspRI	CASTG	2 cut(s)	341, 538
XapI	RAATTY	3 cut(s)	59, 92, 573
XceI	RCATGY	1 cut(s)	564
XcmI	CCANNNNNNNNNTGG	1 cut(s)	388
XhoI	CTCGAG	1 cut(s)	384
XmiI	GTMKAC	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.