Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001981.1

Orthogroup ID

OG0017409

Physical Location & Seq

Genomic Coordinates Forward (+)

144178 .. 144828

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001981.1_g000047.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

atggggagcttgtggaattattacctaacccatccccctaaagatgaagaagacgtcaggaacgcttccgctatggggtgcgtcgccagcggtgtcttgttaatcatgctactcttctttattctctgggaatttctggtgttccataatccccaaaacccagaattccagatcgagtcggcgaccgtggccggactgaaggtcaatggctctttgttgagtggcacatgggatttcacccttgttaccacaaaccccaacaagaaggtcagcatcacatgcgacaccatcgaggcctcgctattcaagcattacagaccctactacaccacgaaccggctgccttccttgtttataaactcctccggtcacaaccatgtcaatttcaaattgggtttagtcagccactatatcgacgctgaagacgccattgaaatctttgaagaaaagaccgctcgaggtttggtcacttttaagctcaggctggtggtcgacttttcttataggactaagttttgggatgtctggaatgtagaagattctggcttaattctggacatcacttgtgagcatgttcaatttgttttttccccaaataatgacactggaatctttagaggtcagtcaactacatgccaccaaggaatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

216

Amino Acids

24.57

Weight (kDa)

5.55

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017409)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0336471
rosa_laevigata	RLG00000029361 RLG00000029362 RLG00000029364 RLG00000029367
rosa_multiflora	Rmu_sc0001981.1_g000028 Rmu_sc0001981.1_g000047
rosa_roxburghii	Rroxscaffold_4G00315390 Rroxscaffold_4G00315550 Rroxscaffold_4G00315560 Rroxscaffold_4G00315620
rosa_rugosa	Rorug04G0097400
rosa_samantha	Rh1BG114700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	356
AatII	GACGTC	1 cut(s)	57
AccBSI	CCGCTC	1 cut(s)	455
AccI	GTMKAC	1 cut(s)	492
AciI	CCGC	3 cut(s)	69, 90, 453
AcoI	YGGCCR	1 cut(s)	189
AcsI	RAATTY	3 cut(s)	131, 164, 645
AcuI	CTGAAG	2 cut(s)	218, 441
AcyI	GRCGYC	2 cut(s)	54, 426
AfiI	CCNNNNNNNGG	2 cut(s)	75, 336
AgsI	TTSAA	5 cut(s)	307, 388, 434, 443, 578
AhdI	GACNNNNNGTC	1 cut(s)	200
AluBI	AGCT	2 cut(s)	9, 478
AluI	AGCT	2 cut(s)	9, 478
Ama87I	CYCGRG	1 cut(s)	456
AoxI	GGCC	2 cut(s)	189, 294
ApeKI	GCWGC	1 cut(s)	340
ApoI	RAATTY	3 cut(s)	131, 164, 645
AsuHPI	GGTGA	1 cut(s)	229
AvaI	CYCGRG	1 cut(s)	456
BbsI	GAAGAC	2 cut(s)	57, 429
BbvI	GCAGC	1 cut(s)	327
BccI	CCATC	2 cut(s)	39, 296
BcgI	CGANNNNNNTGC	2 cut(s)	322, 356
BisI	GCNGC	1 cut(s)	341
BlsI	GCNGC	1 cut(s)	342
BmeRI	GACNNNNNGTC	1 cut(s)	200
BmeT110I	CYCGRG	1 cut(s)	456
BmsI	GCATC	1 cut(s)	282
BpiI	GAAGAC	2 cut(s)	57, 429
Bpu10I	CCTNAGC	1 cut(s)	479
BsaHI	GRCGYC	2 cut(s)	54, 426
BsaJI	CCNNGG	2 cut(s)	186, 640
BsaWI	WCCGGW	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 336
Bse118I	RCCGGY	1 cut(s)	336
Bse1I	ACTGG	1 cut(s)	610
BseDI	CCNNGG	2 cut(s)	186, 640
BseGI	GGATG	2 cut(s)	31, 526
BseLI	CCNNNNNNNGG	2 cut(s)	75, 336
BseMII	CTCAG	1 cut(s)	493
BseNI	ACTGG	1 cut(s)	610
BseRI	GAGGAG	1 cut(s)	352
BseXI	GCAGC	1 cut(s)	327
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	2 cut(s)	191, 296
BsiEI	CGRYCG	1 cut(s)	186
BsiHKCI	CYCGRG	1 cut(s)	456
BsiSI	CCGG	3 cut(s)	192, 337, 366
BslI	CCNNNNNNNGG	2 cut(s)	75, 336
BsnI	GGCC	2 cut(s)	191, 296
BsoBI	CYCGRG	1 cut(s)	456
Bsp143I	GATC	1 cut(s)	171
BspACI	CCGC	3 cut(s)	69, 90, 453
BspANI	GGCC	2 cut(s)	191, 296
BspCNI	CTCAG	1 cut(s)	492
BsrBI	CCGCTC	1 cut(s)	455
BsrFI	RCCGGY	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	610
BssAI	RCCGGY	1 cut(s)	336
BssECI	CCNNGG	2 cut(s)	186, 640
BssMI	GATC	1 cut(s)	171
BssNI	GRCGYC	2 cut(s)	54, 426
BssT1I	CCWWGG	1 cut(s)	640
Bst4CI	ACNGT	1 cut(s)	187
Bst6I	CTCTTC	1 cut(s)	119
BstACI	GRCGYC	2 cut(s)	54, 426
BstAPI	GCANNNNNTGC	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	2 cut(s)	479, 510
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	2 cut(s)	31, 526
BstKTI	GATC	1 cut(s)	174
BstMBI	GATC	1 cut(s)	171
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	5 cut(s)	87, 188, 279, 307, 425
BstNSI	RCATGY	3 cut(s)	282, 575, 636
BstV1I	GCAGC	1 cut(s)	327
BstV2I	GAAGAC	2 cut(s)	57, 429
BsuRI	GGCC	2 cut(s)	191, 296
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	2 cut(s)	31, 526
BtsIMutI	CAGTG	1 cut(s)	603
Cac8I	GCNNGC	1 cut(s)	88
Cfr10I	RCCGGY	1 cut(s)	336
CseI	GACGC	3 cut(s)	70, 425, 434
CviAII	CATG	6 cut(s)	106, 228, 279, 377, 572, 633
CviJI	RGCY	9 cut(s)	9, 191, 210, 296, 340, 405, 478, 484, 546
CviKI_1	RGCY	9 cut(s)	9, 191, 210, 296, 340, 405, 478, 484, 546
DdeI	CTNAG	2 cut(s)	479, 510
DpnI	GATC	1 cut(s)	173
DpnII	GATC	1 cut(s)	171
DriI	GACNNNNNGTC	1 cut(s)	200
EaeI	YGGCCR	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	119
Eam1105I	GACNNNNNGTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	640
Eco147I	AGGCCT	1 cut(s)	296
Eco57I	CTGAAG	2 cut(s)	218, 441
Eco88I	CYCGRG	1 cut(s)	456
EcoRI	GAATTC	1 cut(s)	164
EcoT14I	CCWWGG	1 cut(s)	640
ErhI	CCWWGG	1 cut(s)	640
FaeI	CATG	6 cut(s)	109, 231, 282, 380, 575, 636
FatI	CATG	6 cut(s)	105, 227, 278, 376, 571, 632
FblI	GTMKAC	1 cut(s)	492
Fnu4HI	GCNGC	1 cut(s)	341
FokI	GGATG	2 cut(s)	18, 533
Fsp4HI	GCNGC	1 cut(s)	341
GluI	GCNGC	1 cut(s)	341
HaeIII	GGCC	2 cut(s)	191, 296
HapII	CCGG	3 cut(s)	192, 337, 366
HgaI	GACGC	3 cut(s)	70, 425, 434
Hin1I	GRCGYC	2 cut(s)	54, 426
Hin1II	CATG	6 cut(s)	109, 231, 282, 380, 575, 636
HincII	GTYRAC	2 cut(s)	493, 627
HindII	GTYRAC	2 cut(s)	493, 627
HinfI	GANTC	3 cut(s)	176, 539, 609
HpaII	CCGG	3 cut(s)	192, 337, 366
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	2 cut(s)	493, 627
Hpy188III	TCNNGA	4 cut(s)	58, 169, 526, 554
Hpy8I	GTNNAC	2 cut(s)	493, 627
Hpy99I	CGWCG	2 cut(s)	86, 419
HpyAV	CCTTC	3 cut(s)	193, 259, 354
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4IV	ACGT	1 cut(s)	54
HpyF10VI	GCNNNNNNNGC	5 cut(s)	87, 188, 279, 307, 425
HpyF3I	CTNAG	2 cut(s)	479, 510
HpySE526I	ACGT	1 cut(s)	54
Hsp92I	GRCGYC	2 cut(s)	54, 426
Hsp92II	CATG	6 cut(s)	109, 231, 282, 380, 575, 636
Kzo9I	GATC	1 cut(s)	171
LmnI	GCTCC	1 cut(s)	6
Lsp1109I	GCAGC	1 cut(s)	327
LweI	GCATC	1 cut(s)	282
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	3 cut(s)	244, 368, 466
MalI	GATC	1 cut(s)	173
MbiI	CCGCTC	1 cut(s)	455
MboI	GATC	1 cut(s)	171
MboII	GAAGA	6 cut(s)	59, 62, 106, 434, 455, 548
MluCI	AATT	8 cut(s)	16, 131, 164, 382, 389, 549, 578, 645
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	5 cut(s)	286, 307, 373, 452, 611
MseI	TTAA	3 cut(s)	101, 474, 548
MslI	CAYNNNNRTG	1 cut(s)	375
MspA1I	CMGCKG	1 cut(s)	90
MspI	CCGG	3 cut(s)	192, 337, 366
MwoI	GCNNNNNNNGC	5 cut(s)	87, 188, 279, 307, 425
NdeII	GATC	1 cut(s)	171
NlaIII	CATG	6 cut(s)	109, 231, 282, 380, 575, 636
NmuCI	GTSAC	2 cut(s)	368, 466
NspI	RCATGY	3 cut(s)	282, 575, 636
PaeR7I	CTCGAG	1 cut(s)	456
PceI	AGGCCT	1 cut(s)	296
PfeI	GAWTC	2 cut(s)	539, 609
PkrI	GCNGC	1 cut(s)	342
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
PsiI	TTATAA	1 cut(s)	356
PspXI	VCTCGAGB	1 cut(s)	456
RseI	CAYNNNNRTG	1 cut(s)	375
SalI	GTCGAC	1 cut(s)	491
SaqAI	TTAA	3 cut(s)	101, 474, 548
SatI	GCNGC	1 cut(s)	341
Sau3AI	GATC	1 cut(s)	171
SchI	GAGTC	1 cut(s)	185
SetI	ASST	8 cut(s)	11, 27, 57, 204, 270, 463, 480, 622
SfaNI	GCATC	1 cut(s)	282
Sfr274I	CTCGAG	1 cut(s)	456
SlaI	CTCGAG	1 cut(s)	456
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	1 cut(s)	456
SmoI	CTYRAG	1 cut(s)	456
Sse9I	AATT	8 cut(s)	16, 131, 164, 382, 389, 549, 578, 645
SseBI	AGGCCT	1 cut(s)	296
SsiI	CCGC	3 cut(s)	69, 90, 453
StuI	AGGCCT	1 cut(s)	296
StyI	CCWWGG	1 cut(s)	640
TaaI	ACNGT	1 cut(s)	187
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	5 cut(s)	174, 291, 414, 457, 492
TasI	AATT	8 cut(s)	16, 131, 164, 382, 389, 549, 578, 645
TfiI	GAWTC	2 cut(s)	539, 609
Tru1I	TTAA	3 cut(s)	101, 474, 548
Tru9I	TTAA	3 cut(s)	101, 474, 548
TscAI	CASTG	1 cut(s)	610
TseFI	GTSAC	2 cut(s)	368, 466
TseI	GCWGC	1 cut(s)	340
Tsp45I	GTSAC	2 cut(s)	368, 466
TspDTI	ATGAA	1 cut(s)	60
TspRI	CASTG	1 cut(s)	610
XapI	RAATTY	3 cut(s)	131, 164, 645
XceI	RCATGY	3 cut(s)	282, 575, 636
XhoI	CTCGAG	1 cut(s)	456
XmiI	GTMKAC	1 cut(s)	492
ZraI	GACGTC	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.