Rroxscaffold_4G00315550

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0017409
Physical Location & Seq
Forward (+)
39866436 .. 39867083
648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00315550.1

Sequence Viewer

Length: 648 bp
ATGGGGAGCTTGTGGAATTACAACTTTGAACATCCCCCTAAAGATGAAGAAGACGTCAAGAACACTAACGCTATGGGGAGCATCACCGTTGGGATCTTATCACTCGTATTACTCTTCTGCCTTCTCTGGAGGTTTCTGGTGTTCCATAATCCCCAAGACGCAGAAGTCCAGATCGAGTCGGCGACCGTGGCAGGACTAAAGGTCGATGGCTCTATGTTAAGTGGCACATGGGATTTCACCCTTGTTGCCACAAACCCCAACAAGAAGGTCAGCATCACCTGTGACACCATCGAGGCCTCGCTATTCAAGCATGGCATACCCTACTACGCCACGAACCGGCTGCCTTCCTTGTTTCTAAACTCCTCCAGTCACAACCATGTCAATTTCAGTTTGGGTTTAGTCAACCACTATATCTACGCTGGTGACGCCATTGAAATCCTTCAAGAAAAGACCACTCCAGGTTTGGTCACATTTAAGCTCTGGCTGGTGGTAGACTTCACTTACAGAACTAGGTTTTTGGATGTCTGGGATATGGAAGATTCCGGCATCACGTATGTCACCTGTGAGCCGGTTCAATTTGTTTTTTCCCCAAATAATGACACTGGAATTTTTACAGGTCACTCAACTATATGCCACCAAGGAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

215

Amino Acids

24.12

Weight (kDa)

5.09

Isoelectric Point (pI)

34.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 164
AatII GACGTC 1 cut(s) 57
AccI GTMKAC 1 cut(s) 492
AclWI GGATC 1 cut(s) 101
AcsI RAATTY 2 cut(s) 606, 642
AcyI GRCGYC 2 cut(s) 54, 426
AfiI CCNNNNNNNGG 1 cut(s) 336
AgsI TTSAA 5 cut(s) 29, 307, 434, 443, 575
AhdI GACNNNNNGTC 1 cut(s) 200
AjnI CCWGG 1 cut(s) 457
AluBI AGCT 2 cut(s) 9, 478
AluI AGCT 2 cut(s) 9, 478
AlwI GGATC 1 cut(s) 101
AoxI GGCC 1 cut(s) 294
ApeKI GCWGC 1 cut(s) 340
ApoI RAATTY 2 cut(s) 606, 642
Asp700I GAANNNNTTC 1 cut(s) 438
AsuHPI GGTGA 5 cut(s) 76, 229, 268, 434, 550
BbsI GAAGAC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 327
BccI CCATC 2 cut(s) 200, 296
BcgI CGANNNNNNTGC 2 cut(s) 322, 356
BciT130I CCWGG 1 cut(s) 459
BfaI CTAG 1 cut(s) 510
BisI GCNGC 1 cut(s) 341
BlsI GCNGC 1 cut(s) 342
Bme1390I CCNGG 1 cut(s) 459
BmeRI GACNNNNNGTC 1 cut(s) 200
BmrFI CCNGG 1 cut(s) 459
BmsI GCATC 3 cut(s) 90, 282, 555
BpiI GAAGAC 1 cut(s) 57
BpmI CTGGAG 3 cut(s) 148, 349, 441
BsaAI YACGTR 1 cut(s) 552
BsaHI GRCGYC 2 cut(s) 54, 426
BsaJI CCNNGG 2 cut(s) 186, 637
Bsc4I CCNNNNNNNGG 1 cut(s) 336
Bse118I RCCGGY 2 cut(s) 336, 568
Bse1I ACTGG 2 cut(s) 366, 607
BseBI CCWGG 1 cut(s) 459
BseDI CCNNGG 2 cut(s) 186, 637
BseGI GGATG 2 cut(s) 31, 526
BseLI CCNNNNNNNGG 1 cut(s) 336
BseNI ACTGG 2 cut(s) 366, 607
BseRI GAGGAG 1 cut(s) 352
BseXI GCAGC 1 cut(s) 327
Bsh1285I CGRYCG 1 cut(s) 186
BshFI GGCC 1 cut(s) 296
BsiEI CGRYCG 1 cut(s) 186
BsiSI CCGG 3 cut(s) 337, 543, 569
BslI CCNNNNNNNGG 1 cut(s) 336
BsnI GGCC 1 cut(s) 296
Bsp143I GATC 2 cut(s) 93, 171
BspANI GGCC 1 cut(s) 296
BspPI GGATC 1 cut(s) 101
BsrFI RCCGGY 2 cut(s) 336, 568
BsrI ACTGG 2 cut(s) 366, 607
BssAI RCCGGY 2 cut(s) 336, 568
BssECI CCNNGG 2 cut(s) 186, 637
BssMI GATC 2 cut(s) 93, 171
BssNI GRCGYC 2 cut(s) 54, 426
BssT1I CCWWGG 1 cut(s) 637
Bst2UI CCWGG 1 cut(s) 459
Bst4CI ACNGT 2 cut(s) 88, 187
Bst6I CTCTTC 1 cut(s) 119
BstACI GRCGYC 2 cut(s) 54, 426
BstBAI YACGTR 1 cut(s) 552
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 2 cut(s) 31, 526
BstKTI GATC 2 cut(s) 96, 174
BstMBI GATC 2 cut(s) 93, 171
BstMCI CGRYCG 1 cut(s) 186
BstMWI GCNNNNNNNGC 3 cut(s) 188, 307, 425
BstNI CCWGG 1 cut(s) 459
BstSCI CCNGG 1 cut(s) 457
BstV1I GCAGC 1 cut(s) 327
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
BsuRI GGCC 1 cut(s) 296
BtgI CCRYGG 1 cut(s) 186
BtsCI GGATG 2 cut(s) 31, 526
BtsIMutI CAGTG 1 cut(s) 600
Cfr10I RCCGGY 2 cut(s) 336, 568
CseI GACGC 2 cut(s) 167, 434
CviAII CATG 3 cut(s) 228, 311, 377
CviJI RGCY 7 cut(s) 9, 210, 296, 340, 478, 484, 568
CviKI_1 RGCY 7 cut(s) 9, 210, 296, 340, 478, 484, 568
DpnI GATC 2 cut(s) 95, 173
DpnII GATC 2 cut(s) 93, 171
DrdI GACNNNNNNGTC 1 cut(s) 164
DriI GACNNNNNGTC 1 cut(s) 200
DseDI GACNNNNNNGTC 1 cut(s) 164
Eam1104I CTCTTC 1 cut(s) 119
Eam1105I GACNNNNNGTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 637
Eco147I AGGCCT 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 457
EcoT14I CCWWGG 1 cut(s) 637
ErhI CCWWGG 1 cut(s) 637
FaeI CATG 3 cut(s) 231, 314, 380
FatI CATG 3 cut(s) 227, 310, 376
FblI GTMKAC 1 cut(s) 492
Fnu4HI GCNGC 1 cut(s) 341
FokI GGATG 2 cut(s) 18, 533
Fsp4HI GCNGC 1 cut(s) 341
FspBI CTAG 1 cut(s) 510
GluI GCNGC 1 cut(s) 341
GsuI CTGGAG 3 cut(s) 148, 349, 441
HaeIII GGCC 1 cut(s) 296
HapII CCGG 3 cut(s) 337, 543, 569
HgaI GACGC 2 cut(s) 167, 434
Hin1I GRCGYC 2 cut(s) 54, 426
Hin1II CATG 3 cut(s) 231, 314, 380
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HinfI GANTC 2 cut(s) 176, 539
HpaII CCGG 3 cut(s) 337, 543, 569
HphI GGTGA 5 cut(s) 76, 229, 268, 434, 550
Hpy166II GTNNAC 2 cut(s) 403, 493
Hpy188III TCNNGA 4 cut(s) 58, 127, 169, 443
Hpy8I GTNNAC 2 cut(s) 403, 493
HpyAV CCTTC 4 cut(s) 131, 259, 354, 449
HpyCH4III ACNGT 2 cut(s) 88, 187
HpyCH4IV ACGT 2 cut(s) 54, 551
HpyF10VI GCNNNNNNNGC 3 cut(s) 188, 307, 425
HpySE526I ACGT 2 cut(s) 54, 551
Hsp92I GRCGYC 2 cut(s) 54, 426
Hsp92II CATG 3 cut(s) 231, 314, 380
Kzo9I GATC 2 cut(s) 93, 171
LmnI GCTCC 2 cut(s) 6, 78
Lsp1109I GCAGC 1 cut(s) 327
LweI GCATC 3 cut(s) 90, 282, 555
MaeI CTAG 1 cut(s) 510
MaeII ACGT 2 cut(s) 54, 551
MaeIII GTNAC 6 cut(s) 281, 368, 422, 466, 556, 617
MalI GATC 2 cut(s) 95, 173
MboI GATC 2 cut(s) 93, 171
MboII GAAGA 4 cut(s) 59, 62, 106, 548
MflI RGATCY 1 cut(s) 93
MluCI AATT 5 cut(s) 16, 382, 575, 606, 642
MlyI GAGTC 1 cut(s) 185
MnlI CCTC 4 cut(s) 123, 286, 307, 373
MroXI GAANNNNTTC 1 cut(s) 438
MseI TTAA 2 cut(s) 218, 474
MslI CAYNNNNRTG 1 cut(s) 375
MspI CCGG 3 cut(s) 337, 543, 569
MspR9I CCNGG 1 cut(s) 459
MvaI CCWGG 1 cut(s) 459
MwoI GCNNNNNNNGC 3 cut(s) 188, 307, 425
NdeII GATC 2 cut(s) 93, 171
NlaIII CATG 3 cut(s) 231, 314, 380
NmuCI GTSAC 6 cut(s) 281, 368, 422, 466, 556, 617
PceI AGGCCT 1 cut(s) 296
PdmI GAANNNNTTC 1 cut(s) 438
PfeI GAWTC 1 cut(s) 539
PkrI GCNGC 1 cut(s) 342
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
Ppu21I YACGTR 1 cut(s) 552
Psp6I CCWGG 1 cut(s) 457
PspGI CCWGG 1 cut(s) 457
PsuI RGATCY 1 cut(s) 93
RseI CAYNNNNRTG 1 cut(s) 375
SaqAI TTAA 2 cut(s) 218, 474
SatI GCNGC 1 cut(s) 341
Sau3AI GATC 2 cut(s) 93, 171
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 1 cut(s) 459
SfaNI GCATC 3 cut(s) 90, 282, 555
SmiMI CAYNNNNRTG 1 cut(s) 375
Sse9I AATT 5 cut(s) 16, 382, 575, 606, 642
SseBI AGGCCT 1 cut(s) 296
SspMI CTAG 1 cut(s) 510
StuI AGGCCT 1 cut(s) 296
StyD4I CCNGG 1 cut(s) 457
StyI CCWWGG 1 cut(s) 637
TaaI ACNGT 2 cut(s) 88, 187
TaiI ACGT 2 cut(s) 57, 554
TaqI TCGA 3 cut(s) 174, 204, 291
TasI AATT 5 cut(s) 16, 382, 575, 606, 642
TfiI GAWTC 1 cut(s) 539
Tru1I TTAA 2 cut(s) 218, 474
Tru9I TTAA 2 cut(s) 218, 474
TscAI CASTG 1 cut(s) 607
TseFI GTSAC 6 cut(s) 281, 368, 422, 466, 556, 617
TseI GCWGC 1 cut(s) 340
Tsp45I GTSAC 6 cut(s) 281, 368, 422, 466, 556, 617
TspDTI ATGAA 1 cut(s) 60
TspRI CASTG 1 cut(s) 607
XapI RAATTY 2 cut(s) 606, 642
XcmI CCANNNNNNNNNTGG 1 cut(s) 460
XmiI GTMKAC 1 cut(s) 492
XmnI GAANNNNTTC 1 cut(s) 438
XspI CTAG 1 cut(s) 510
ZraI GACGTC 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.