Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0017409

Physical Location & Seq

Genomic Coordinates Forward (+)

37180009 .. 37180675

Gene Structure 667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029364

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGGGAGCTTGTGGAATTACAACTTTGAACATCCCCCTAAAGATGAAGAAGACGTCAAGAACATTAACGCTATGGGGAGCATCACCGTCGGGTTCTTGTCACTCGTATTACTCTTCTGCCTTCTCTGGAGGTTTCTGGTGTTCAATAATCCCCAACGCGCAGAATTCCAGATCGAGTCGGCGACCGTGGCCGGACTAAAGGTCGATGGCTCTCTGTTGAGTGGCACATGGGATTTCACCCTTGTTGCCACAAACCCCAACAAGAAAGTCAGCATCACCTGTGACAACATCGAGGCCTCGGTATACAAGCATGGCATACCCTTCTACGCCACGAACCAGCTGCCTTCCTTCTTTATAAACTCCTCCAGTTATAACCGTGTCAATTTCAAATTGGGTGTAGTCAGCCGTTATATCTACGCTGATGACGCCGTTGAAATCTTTCAAGAAAAGACCACTCCAGGTTTGGTCACATTTAAGCTCTGGCTGGTGGTCAGTCAACTATATGCCACCGAGGGTGATGCTTCTGCACAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

179

Amino Acids

19.98

Weight (kDa)

5.12

Isoelectric Point (pI)

36.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017409)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0336471
rosa_laevigata	RLG00000029361 RLG00000029362 RLG00000029364 RLG00000029367
rosa_multiflora	Rmu_sc0001981.1_g000028 Rmu_sc0001981.1_g000047
rosa_roxburghii	Rroxscaffold_4G00315390 Rroxscaffold_4G00315550 Rroxscaffold_4G00315560 Rroxscaffold_4G00315620
rosa_rugosa	Rorug04G0097400
rosa_samantha	Rh1BG114700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	356, 372
AatII	GACGTC	1 cut(s)	57
AccI	GTMKAC	1 cut(s)	303
AccII	CGCG	1 cut(s)	159
AcoI	YGGCCR	1 cut(s)	189
AcsI	RAATTY	1 cut(s)	164
AcyI	GRCGYC	2 cut(s)	54, 426
AgsI	TTSAA	5 cut(s)	29, 145, 388, 434, 443
AhdI	GACNNNNNGTC	1 cut(s)	200
AjnI	CCWGG	1 cut(s)	457
AluBI	AGCT	3 cut(s)	9, 340, 478
AluI	AGCT	3 cut(s)	9, 340, 478
AoxI	GGCC	2 cut(s)	189, 294
ApeKI	GCWGC	1 cut(s)	340
ApoI	RAATTY	1 cut(s)	164
Asp700I	GAANNNNTTC	1 cut(s)	438
AspLEI	GCGC	1 cut(s)	161
AsuHPI	GGTGA	4 cut(s)	76, 229, 268, 527
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	327
BccI	CCATC	1 cut(s)	200
BceAI	ACGGC	2 cut(s)	390, 413
BcgI	CGANNNNNNTGC	6 cut(s)	70, 104, 322, 356, 500, 534
BciT130I	CCWGG	1 cut(s)	459
BisI	GCNGC	1 cut(s)	341
BlsI	GCNGC	1 cut(s)	342
Bme1390I	CCNGG	1 cut(s)	459
BmeRI	GACNNNNNGTC	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	459
BmsI	GCATC	3 cut(s)	90, 282, 508
BpiI	GAAGAC	1 cut(s)	57
BpmI	CTGGAG	3 cut(s)	148, 349, 441
BsaHI	GRCGYC	2 cut(s)	54, 426
BsaJI	CCNNGG	3 cut(s)	186, 297, 510
Bse1I	ACTGG	1 cut(s)	366
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	3 cut(s)	186, 297, 510
BseGI	GGATG	1 cut(s)	31
BseNI	ACTGG	1 cut(s)	366
BseRI	GAGGAG	1 cut(s)	352
BseXI	GCAGC	1 cut(s)	327
BsgI	GTGCAG	1 cut(s)	510
Bsh1236I	CGCG	1 cut(s)	159
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	2 cut(s)	191, 296
BsiEI	CGRYCG	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	192
BsnI	GGCC	2 cut(s)	191, 296
Bsp143I	GATC	1 cut(s)	171
BspANI	GGCC	2 cut(s)	191, 296
BspFNI	CGCG	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	366
BssECI	CCNNGG	3 cut(s)	186, 297, 510
BssMI	GATC	1 cut(s)	171
BssNAI	GTATAC	1 cut(s)	304
BssNI	GRCGYC	2 cut(s)	54, 426
Bst1107I	GTATAC	1 cut(s)	304
Bst2UI	CCWGG	1 cut(s)	459
Bst4CI	ACNGT	3 cut(s)	88, 187, 377
Bst6I	CTCTTC	1 cut(s)	119
BstACI	GRCGYC	2 cut(s)	54, 426
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	31
BstFNI	CGCG	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	1 cut(s)	174
BstMBI	GATC	1 cut(s)	171
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 425
BstNI	CCWGG	1 cut(s)	459
BstSCI	CCNGG	1 cut(s)	457
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	327
BstV2I	GAAGAC	1 cut(s)	57
BstZ17I	GTATAC	1 cut(s)	304
BsuRI	GGCC	2 cut(s)	191, 296
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	31
CfoI	GCGC	1 cut(s)	161
CseI	GACGC	1 cut(s)	434
CviAII	CATG	2 cut(s)	228, 311
CviJI	RGCY	8 cut(s)	9, 191, 210, 296, 340, 405, 478, 484
CviKI_1	RGCY	8 cut(s)	9, 191, 210, 296, 340, 405, 478, 484
DpnI	GATC	1 cut(s)	173
DpnII	GATC	1 cut(s)	171
DriI	GACNNNNNGTC	1 cut(s)	200
EaeI	YGGCCR	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	119
Eam1105I	GACNNNNNGTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	119
Eco147I	AGGCCT	1 cut(s)	296
EcoRI	GAATTC	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	457
FaeI	CATG	2 cut(s)	231, 314
FatI	CATG	2 cut(s)	227, 310
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	1 cut(s)	341
FokI	GGATG	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	341
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	1 cut(s)	341
GsuI	CTGGAG	3 cut(s)	148, 349, 441
HaeIII	GGCC	2 cut(s)	191, 296
HapII	CCGG	1 cut(s)	192
HgaI	GACGC	1 cut(s)	434
HhaI	GCGC	1 cut(s)	161
Hin1I	GRCGYC	2 cut(s)	54, 426
Hin1II	CATG	2 cut(s)	231, 314
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HincII	GTYRAC	1 cut(s)	497
HindII	GTYRAC	1 cut(s)	497
HinfI	GANTC	1 cut(s)	176
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	4 cut(s)	76, 229, 268, 527
Hpy166II	GTNNAC	2 cut(s)	304, 497
Hpy188III	TCNNGA	4 cut(s)	58, 127, 169, 443
Hpy8I	GTNNAC	2 cut(s)	304, 497
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	4 cut(s)	131, 331, 354, 358
HpyCH4III	ACNGT	3 cut(s)	88, 187, 377
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	1 cut(s)	527
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 425
HpySE526I	ACGT	1 cut(s)	54
Hsp92I	GRCGYC	2 cut(s)	54, 426
Hsp92II	CATG	2 cut(s)	231, 314
HspAI	GCGC	1 cut(s)	159
Kzo9I	GATC	1 cut(s)	171
LmnI	GCTCC	2 cut(s)	6, 78
Lsp1109I	GCAGC	1 cut(s)	327
LweI	GCATC	3 cut(s)	90, 282, 508
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	3 cut(s)	99, 281, 466
MalI	GATC	1 cut(s)	173
MboI	GATC	1 cut(s)	171
MboII	GAAGA	3 cut(s)	59, 62, 106
MluCI	AATT	5 cut(s)	16, 164, 382, 389, 530
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	5 cut(s)	123, 286, 307, 373, 505
MroXI	GAANNNNTTC	1 cut(s)	438
MseI	TTAA	2 cut(s)	66, 474
MspA1I	CMGCKG	1 cut(s)	340
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	459
MvaI	CCWGG	1 cut(s)	459
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	2 cut(s)	188, 425
NdeII	GATC	1 cut(s)	171
NlaIII	CATG	2 cut(s)	231, 314
NmuCI	GTSAC	3 cut(s)	99, 281, 466
PceI	AGGCCT	1 cut(s)	296
PdmI	GAANNNNTTC	1 cut(s)	438
PkrI	GCNGC	1 cut(s)	342
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
PsiI	TTATAA	2 cut(s)	356, 372
Psp6I	CCWGG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	457
PvuII	CAGCTG	1 cut(s)	340
SaqAI	TTAA	2 cut(s)	66, 474
SatI	GCNGC	1 cut(s)	341
Sau3AI	GATC	1 cut(s)	171
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	459
SetI	ASST	8 cut(s)	11, 57, 134, 204, 281, 342, 463, 480
SfaNI	GCATC	3 cut(s)	90, 282, 508
Sse9I	AATT	5 cut(s)	16, 164, 382, 389, 530
SseBI	AGGCCT	1 cut(s)	296
StuI	AGGCCT	1 cut(s)	296
StyD4I	CCNGG	1 cut(s)	457
TaaI	ACNGT	3 cut(s)	88, 187, 377
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	3 cut(s)	174, 204, 291
TasI	AATT	5 cut(s)	16, 164, 382, 389, 530
Tru1I	TTAA	2 cut(s)	66, 474
Tru9I	TTAA	2 cut(s)	66, 474
TseFI	GTSAC	3 cut(s)	99, 281, 466
TseI	GCWGC	1 cut(s)	340
Tsp45I	GTSAC	3 cut(s)	99, 281, 466
TspDTI	ATGAA	1 cut(s)	60
XapI	RAATTY	1 cut(s)	164
XcmI	CCANNNNNNNNNTGG	1 cut(s)	460
XmiI	GTMKAC	1 cut(s)	303
XmnI	GAANNNNTTC	1 cut(s)	438
ZraI	GACGTC	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.