Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0017409

Physical Location & Seq

Genomic Coordinates Forward (+)

39880421 .. 39881068

Gene Structure 648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00315560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGGGAGCTTGTGGAATTACAACTTTGAACATCCCCCTAAAGATGAAGAAGACGTCAAGAACATTAACGCTATGGGGAGCATCACCGTCGGGATCTTATCACTCGTATTACTCTTCTGCCTTCTCTGGAGGTTTCTGGTGTTCCATAATCCCCAACGTACAGAATTCCAGATCGAGTCGGCGACCGTGGCCGGACTAAAGGTCGAGGGCTCTATGTTGAGTGGCACATGGGATTTCACCCTTGTTGCCAGAAACCCCAACCAGAAGGTCAGCATCACCTGTGACACCATCGAGGCCTCGCTATTCAAGCATTACATGCCCTACTACGCCACGAACCGGCTGCCTTCCTTCTTTATAAACTCCTCCAGTCACACCCATGTCAATTTCAAATTGGGTTTAGTCAGCCATTATATCGACGCTGATGACGCCATTGAAATCTTTCAAGAAAAGATCACTCCAGGTTTGATCACATTTAAGCTCCGGCTGGTGGTAATCTTCACTAATAGGACTAAGTTTTGGGATGTCTGGAATATAGAAGATTCCGGCTTAATCACGTATGTCACCTGTGAGCCGGTTCAATTTGTTTTTTCCCCAAATAATGACACTGGAATTTTTACAGGTCAGTCAACTATATGCCACCGAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

215

Amino Acids

24.51

Weight (kDa)

5.76

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017409)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0336471
rosa_laevigata	RLG00000029361 RLG00000029362 RLG00000029364 RLG00000029367
rosa_multiflora	Rmu_sc0001981.1_g000028 Rmu_sc0001981.1_g000047
rosa_roxburghii	Rroxscaffold_4G00315390 Rroxscaffold_4G00315550 Rroxscaffold_4G00315560 Rroxscaffold_4G00315620
rosa_rugosa	Rorug04G0097400
rosa_samantha	Rh1BG114700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	356
AatII	GACGTC	1 cut(s)	57
AclWI	GGATC	1 cut(s)	101
AcoI	YGGCCR	1 cut(s)	189
AcsI	RAATTY	2 cut(s)	164, 609
AcyI	GRCGYC	2 cut(s)	54, 426
AfaI	GTAC	1 cut(s)	160
AfiI	CCNNNNNNNGG	2 cut(s)	336, 487
AgsI	TTSAA	6 cut(s)	29, 307, 388, 434, 443, 578
AhdI	GACNNNNNGTC	1 cut(s)	200
AjnI	CCWGG	1 cut(s)	457
AluBI	AGCT	2 cut(s)	9, 478
AluI	AGCT	2 cut(s)	9, 478
AlwI	GGATC	1 cut(s)	101
AoxI	GGCC	2 cut(s)	189, 294
ApeKI	GCWGC	1 cut(s)	340
ApoI	RAATTY	2 cut(s)	164, 609
Asp700I	GAANNNNTTC	1 cut(s)	438
AsuHPI	GGTGA	4 cut(s)	76, 229, 268, 553
BanII	GRGCYC	1 cut(s)	212
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	327
BccI	CCATC	1 cut(s)	296
BcgI	CGANNNNNNTGC	4 cut(s)	70, 104, 322, 356
BciT130I	CCWGG	1 cut(s)	459
BclI	TGATCA	1 cut(s)	465
BisI	GCNGC	1 cut(s)	341
BlsI	GCNGC	1 cut(s)	342
Bme1390I	CCNGG	1 cut(s)	459
BmeRI	GACNNNNNGTC	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	459
BmsI	GCATC	2 cut(s)	90, 282
BpiI	GAAGAC	1 cut(s)	57
BpmI	CTGGAG	3 cut(s)	148, 349, 441
BsaAI	YACGTR	1 cut(s)	555
BsaHI	GRCGYC	2 cut(s)	54, 426
BsaJI	CCNNGG	2 cut(s)	186, 640
Bsc4I	CCNNNNNNNGG	2 cut(s)	336, 487
Bse118I	RCCGGY	2 cut(s)	336, 571
Bse1I	ACTGG	2 cut(s)	366, 610
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	2 cut(s)	186, 640
BseGI	GGATG	2 cut(s)	31, 526
BseLI	CCNNNNNNNGG	2 cut(s)	336, 487
BseNI	ACTGG	2 cut(s)	366, 610
BseRI	GAGGAG	1 cut(s)	352
BseXI	GCAGC	1 cut(s)	327
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	2 cut(s)	191, 296
BsiEI	CGRYCG	1 cut(s)	186
BsiSI	CCGG	5 cut(s)	192, 337, 481, 543, 572
BslI	CCNNNNNNNGG	2 cut(s)	336, 487
BsnI	GGCC	2 cut(s)	191, 296
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp143I	GATC	4 cut(s)	93, 171, 450, 465
BspANI	GGCC	2 cut(s)	191, 296
BspPI	GGATC	1 cut(s)	101
BsrFI	RCCGGY	2 cut(s)	336, 571
BsrI	ACTGG	2 cut(s)	366, 610
BssAI	RCCGGY	2 cut(s)	336, 571
BssECI	CCNNGG	2 cut(s)	186, 640
BssMI	GATC	4 cut(s)	93, 171, 450, 465
BssNI	GRCGYC	2 cut(s)	54, 426
Bst2UI	CCWGG	1 cut(s)	459
Bst4CI	ACNGT	2 cut(s)	88, 187
Bst6I	CTCTTC	1 cut(s)	119
BstACI	GRCGYC	2 cut(s)	54, 426
BstAPI	GCANNNNNTGC	1 cut(s)	316
BstBAI	YACGTR	1 cut(s)	555
BstDEI	CTNAG	1 cut(s)	510
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	2 cut(s)	31, 526
BstKTI	GATC	4 cut(s)	96, 174, 453, 468
BstMBI	GATC	4 cut(s)	93, 171, 450, 465
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	4 cut(s)	188, 307, 316, 425
BstNI	CCWGG	1 cut(s)	459
BstNSI	RCATGY	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	457
BstV1I	GCAGC	1 cut(s)	327
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
BsuRI	GGCC	2 cut(s)	191, 296
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	2 cut(s)	31, 526
BtsIMutI	CAGTG	1 cut(s)	603
Cfr10I	RCCGGY	2 cut(s)	336, 571
CseI	GACGC	2 cut(s)	425, 434
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	3 cut(s)	228, 316, 377
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	1 cut(s)	510
DpnI	GATC	4 cut(s)	95, 173, 452, 467
DpnII	GATC	4 cut(s)	93, 171, 450, 465
DriI	GACNNNNNGTC	1 cut(s)	200
EaeI	YGGCCR	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	119
Eam1105I	GACNNNNNGTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	119
Eco147I	AGGCCT	1 cut(s)	296
Eco24I	GRGCYC	1 cut(s)	212
EcoRI	GAATTC	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	457
EcoT38I	GRGCYC	1 cut(s)	212
FaeI	CATG	3 cut(s)	231, 319, 380
FatI	CATG	3 cut(s)	227, 315, 376
FbaI	TGATCA	1 cut(s)	465
Fnu4HI	GCNGC	1 cut(s)	341
FokI	GGATG	2 cut(s)	18, 533
FriOI	GRGCYC	1 cut(s)	212
Fsp4HI	GCNGC	1 cut(s)	341
GluI	GCNGC	1 cut(s)	341
GsuI	CTGGAG	3 cut(s)	148, 349, 441
HaeIII	GGCC	2 cut(s)	191, 296
HapII	CCGG	5 cut(s)	192, 337, 481, 543, 572
HgaI	GACGC	2 cut(s)	425, 434
Hin1I	GRCGYC	2 cut(s)	54, 426
Hin1II	CATG	3 cut(s)	231, 319, 380
HincII	GTYRAC	1 cut(s)	627
HindII	GTYRAC	1 cut(s)	627
HinfI	GANTC	2 cut(s)	176, 539
HpaII	CCGG	5 cut(s)	192, 337, 481, 543, 572
HphI	GGTGA	4 cut(s)	76, 229, 268, 553
Hpy166II	GTNNAC	1 cut(s)	627
Hpy188III	TCNNGA	6 cut(s)	58, 91, 127, 169, 443, 526
Hpy8I	GTNNAC	1 cut(s)	627
Hpy99I	CGWCG	2 cut(s)	92, 419
HpyAV	CCTTC	4 cut(s)	131, 259, 354, 358
HpyCH4III	ACNGT	2 cut(s)	88, 187
HpyCH4IV	ACGT	3 cut(s)	54, 157, 554
HpyF10VI	GCNNNNNNNGC	4 cut(s)	188, 307, 316, 425
HpyF3I	CTNAG	1 cut(s)	510
HpySE526I	ACGT	3 cut(s)	54, 157, 554
Hsp92I	GRCGYC	2 cut(s)	54, 426
Hsp92II	CATG	3 cut(s)	231, 319, 380
Ksp22I	TGATCA	1 cut(s)	465
Kzo9I	GATC	4 cut(s)	93, 171, 450, 465
LmnI	GCTCC	3 cut(s)	6, 78, 483
Lsp1109I	GCAGC	1 cut(s)	327
LweI	GCATC	2 cut(s)	90, 282
MaeII	ACGT	3 cut(s)	54, 157, 554
MaeIII	GTNAC	3 cut(s)	281, 368, 559
MalI	GATC	4 cut(s)	95, 173, 452, 467
MboI	GATC	4 cut(s)	93, 171, 450, 465
MboII	GAAGA	5 cut(s)	59, 62, 106, 487, 548
MflI	RGATCY	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	212
MluCI	AATT	6 cut(s)	16, 164, 382, 389, 578, 609
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	6 cut(s)	123, 199, 286, 307, 373, 635
MroXI	GAANNNNTTC	1 cut(s)	438
MseI	TTAA	3 cut(s)	66, 474, 548
MslI	CAYNNNNRTG	1 cut(s)	375
MspI	CCGG	5 cut(s)	192, 337, 481, 543, 572
MspR9I	CCNGG	1 cut(s)	459
MvaI	CCWGG	1 cut(s)	459
MwoI	GCNNNNNNNGC	4 cut(s)	188, 307, 316, 425
NdeII	GATC	4 cut(s)	93, 171, 450, 465
NlaIII	CATG	3 cut(s)	231, 319, 380
NmuCI	GTSAC	3 cut(s)	281, 368, 559
NspI	RCATGY	1 cut(s)	319
PceI	AGGCCT	1 cut(s)	296
PdmI	GAANNNNTTC	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	539
PkrI	GCNGC	1 cut(s)	342
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
Ppu21I	YACGTR	1 cut(s)	555
PsiI	TTATAA	1 cut(s)	356
Psp6I	CCWGG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	457
PsuI	RGATCY	1 cut(s)	93
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
RseI	CAYNNNNRTG	1 cut(s)	375
SaqAI	TTAA	3 cut(s)	66, 474, 548
SatI	GCNGC	1 cut(s)	341
Sau3AI	GATC	4 cut(s)	93, 171, 450, 465
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	459
SduI	GDGCHC	1 cut(s)	212
SfaNI	GCATC	2 cut(s)	90, 282
SmiMI	CAYNNNNRTG	1 cut(s)	375
Sse9I	AATT	6 cut(s)	16, 164, 382, 389, 578, 609
SseBI	AGGCCT	1 cut(s)	296
StuI	AGGCCT	1 cut(s)	296
StyD4I	CCNGG	1 cut(s)	457
TaaI	ACNGT	2 cut(s)	88, 187
TaiI	ACGT	3 cut(s)	57, 160, 557
TaqI	TCGA	4 cut(s)	174, 204, 291, 414
TasI	AATT	6 cut(s)	16, 164, 382, 389, 578, 609
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	3 cut(s)	66, 474, 548
Tru9I	TTAA	3 cut(s)	66, 474, 548
TscAI	CASTG	1 cut(s)	610
TseFI	GTSAC	3 cut(s)	281, 368, 559
TseI	GCWGC	1 cut(s)	340
Tsp45I	GTSAC	3 cut(s)	281, 368, 559
TspDTI	ATGAA	1 cut(s)	60
TspRI	CASTG	1 cut(s)	610
XapI	RAATTY	2 cut(s)	164, 609
XceI	RCATGY	1 cut(s)	319
XmnI	GAANNNNTTC	1 cut(s)	438
ZraI	GACGTC	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.