Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0017409

Physical Location & Seq

Genomic Coordinates Reverse (-)

19553520 .. 19568073

Gene Structure 14554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG114700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGTGGAATTATTACCTAACCCATCCCCCTAAAGATGAAGAAGACGTCAAGAACGCTTCCGCTATGTGGTGCGTCGCCAGCGGTGTCTTGTCACTCATATTACTCATCTGCATTCTCCGGAAATTTCTGGTGTTCCATAATCCCCAAAACGCAGAATTCCAGATCGAGTCGGCGACCGTGGCCGGACTAAAGGTTGATGGCTCTATGTTAAGTGGCACATGGGATTTCACCCTTGTTGCCACAAATCCCAACAAGAAGGTCAGCATCACCTGTGACACCATCGAGGCCTCGCTATTCAAGCATTACATACCCTACTACGCCACGAACCGGCTGCCTTCCTTGTTTATAAACTCCTCCAGTCACAACCATTTCAATTTCAAATTGGGTTTAGTCAGCCACTATATCGATGCTGATGACGCCATTGAAATCTTTGAAGAAAAGACCACTCGAGGTTTGGTCACTTTTAAGCTCTGGCTGGTGGTAGACTTTACTTATAGGACTAAGTTTTGGGATGTCTGGGATGTAAAAGATTCCGGCTTAGTTCTGGACATCACCTGTGAGCCTGTTCAATTTGTTTTTTCCCCAAATAATGACACTGGAATCTTTAGAGGCCATTCACAGTATACAACTCCTAAGAATATGCAGAAAAGGAGGGATAATTGCTCGGGAGCTCCAAGGGGAAGGAGACTACAATCAGAGACATGGTTTCAGTGCTATGAACCTGCAACCATAAAATACTTTGGATATTACCCTGCATTGACACCTGATGAGGGCTTATCAACCTCGGCCGTACAAGCCACTATCGCTACAGCACCAAAAGCAACAAGCCCAGATGAGAAAGGTATGAAACCGCAGTGGAAAGCGATAGATTTCAAGTGGATAAGGGAGAACAAGGAAGTTGTTGCTTGGTATTGCAGCCTAGTTTCATTGAATTTGGGTGATATTTGGTATGAGTCTGAACTGGGTCTTCTTTTTTCTAGTGCACGCCACCTGTTCGATGGAATGCCTCACATAACCCTTCACTTTAATTGGACGGAGAAGTTGGGGCCAGCAACATTGGAGGTCAAAAGTTGCATATATTCAAGAAGTCGTGAAGACCAAGTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

369

Amino Acids

42.18

Weight (kDa)

6.22

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017409)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0336471
rosa_laevigata	RLG00000029361 RLG00000029362 RLG00000029364 RLG00000029367
rosa_multiflora	Rmu_sc0001981.1_g000028 Rmu_sc0001981.1_g000047
rosa_roxburghii	Rroxscaffold_4G00315390 Rroxscaffold_4G00315550 Rroxscaffold_4G00315560 Rroxscaffold_4G00315620
rosa_rugosa	Rorug04G0097400
rosa_samantha	Rh1BG114700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	347
AatII	GACGTC	1 cut(s)	48
Acc36I	ACCTGC	1 cut(s)	730
AccI	GTMKAC	2 cut(s)	483, 623
AccIII	TCCGGA	1 cut(s)	117
AciI	CCGC	3 cut(s)	60, 81, 851
AcoI	YGGCCR	2 cut(s)	180, 786
AcsI	RAATTY	3 cut(s)	122, 155, 931
AcyI	GRCGYC	2 cut(s)	45, 417
AfaI	GTAC	1 cut(s)	792
AfiI	CCNNNNNNNGG	3 cut(s)	66, 327, 770
AgsI	TTSAA	9 cut(s)	298, 373, 379, 425, 434, 569, 874, 931, 1083
AluBI	AGCT	2 cut(s)	469, 671
AluI	AGCT	2 cut(s)	469, 671
Alw21I	GWGCWC	2 cut(s)	673, 985
Alw26I	GTCTC	2 cut(s)	679, 692
Alw44I	GTGCAC	1 cut(s)	981
Ama87I	CYCGRG	2 cut(s)	447, 664
Aor13HI	TCCGGA	1 cut(s)	117
AoxI	GGCC	5 cut(s)	180, 285, 610, 786, 1046
ApaLI	GTGCAC	1 cut(s)	981
ApeKI	GCWGC	2 cut(s)	331, 915
ApoI	RAATTY	3 cut(s)	122, 155, 931
AspS9I	GGNCC	1 cut(s)	1046
AsuHPI	GGTGA	4 cut(s)	220, 259, 544, 950
AvaI	CYCGRG	2 cut(s)	447, 664
BaeGI	GKGCMC	1 cut(s)	985
BanII	GRGCYC	1 cut(s)	673
BbsI	GAAGAC	3 cut(s)	48, 959, 1101
Bbv12I	GWGCWC	2 cut(s)	673, 985
BbvI	GCAGC	2 cut(s)	318, 927
BccI	CCATC	4 cut(s)	30, 191, 287, 992
BceAI	ACGGC	1 cut(s)	773
BcgI	CGANNNNNNTGC	2 cut(s)	313, 347
BcoDI	GTCTC	2 cut(s)	679, 692
BfaI	CTAG	2 cut(s)	920, 978
BfmI	CTRYAG	1 cut(s)	807
BfuAI	ACCTGC	1 cut(s)	730
BisI	GCNGC	2 cut(s)	332, 916
BlsI	GCNGC	2 cut(s)	333, 917
BmeT110I	CYCGRG	2 cut(s)	447, 664
BmgT120I	GGNCC	1 cut(s)	1046
BmiI	GGNNCC	1 cut(s)	1047
BmrI	ACTGGG	1 cut(s)	971
BmsI	GCATC	2 cut(s)	273, 397
BmuI	ACTGGG	1 cut(s)	971
BpiI	GAAGAC	3 cut(s)	48, 959, 1101
BpmI	CTGGAG	1 cut(s)	340
Bsa29I	ATCGAT	1 cut(s)	405
BsaHI	GRCGYC	2 cut(s)	45, 417
BsaJI	CCNNGG	3 cut(s)	177, 674, 783
BsaWI	WCCGGW	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 327, 770
Bse118I	RCCGGY	1 cut(s)	327
Bse1I	ACTGG	3 cut(s)	357, 601, 966
BseAI	TCCGGA	1 cut(s)	117
BseCI	ATCGAT	1 cut(s)	405
BseDI	CCNNGG	3 cut(s)	177, 674, 783
BseGI	GGATG	3 cut(s)	22, 517, 526
BseLI	CCNNNNNNNGG	3 cut(s)	66, 327, 770
BseNI	ACTGG	3 cut(s)	357, 601, 966
BseRI	GAGGAG	1 cut(s)	343
BseSI	GKGCMC	1 cut(s)	985
BseX3I	CGGCCG	1 cut(s)	786
BseXI	GCAGC	2 cut(s)	318, 927
Bsh1285I	CGRYCG	2 cut(s)	177, 789
BshFI	GGCC	5 cut(s)	182, 287, 612, 788, 1048
BshVI	ATCGAT	1 cut(s)	405
BsiEI	CGRYCG	2 cut(s)	177, 789
BsiHKAI	GWGCWC	2 cut(s)	673, 985
BsiHKCI	CYCGRG	2 cut(s)	447, 664
BsiSI	CCGG	4 cut(s)	118, 183, 328, 534
BslI	CCNNNNNNNGG	3 cut(s)	66, 327, 770
BsmAI	GTCTC	2 cut(s)	679, 692
BsmI	GAATGC	2 cut(s)	111, 1008
BsnI	GGCC	5 cut(s)	182, 287, 612, 788, 1048
BsoBI	CYCGRG	2 cut(s)	447, 664
Bsp1286I	GDGCHC	2 cut(s)	673, 985
Bsp13I	TCCGGA	1 cut(s)	117
Bsp143I	GATC	1 cut(s)	162
BspACI	CCGC	3 cut(s)	60, 81, 851
BspANI	GGCC	5 cut(s)	182, 287, 612, 788, 1048
BspDI	ATCGAT	1 cut(s)	405
BspEI	TCCGGA	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	1047
BspMI	ACCTGC	1 cut(s)	730
BsrFI	RCCGGY	1 cut(s)	327
BsrI	ACTGG	3 cut(s)	357, 601, 966
BssAI	RCCGGY	1 cut(s)	327
BssECI	CCNNGG	3 cut(s)	177, 674, 783
BssMI	GATC	1 cut(s)	162
BssNAI	GTATAC	1 cut(s)	624
BssNI	GRCGYC	2 cut(s)	45, 417
BssT1I	CCWWGG	1 cut(s)	674
Bst1107I	GTATAC	1 cut(s)	624
Bst4CI	ACNGT	2 cut(s)	178, 621
BstACI	GRCGYC	2 cut(s)	45, 417
BstC8I	GCNNGC	3 cut(s)	79, 985, 1050
BstDEI	CTNAG	3 cut(s)	501, 538, 633
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	3 cut(s)	22, 517, 526
BstKTI	GATC	1 cut(s)	165
BstMAI	GTCTC	2 cut(s)	679, 692
BstMBI	GATC	1 cut(s)	162
BstMCI	CGRYCG	2 cut(s)	177, 789
BstMWI	GCNNNNNNNGC	7 cut(s)	78, 179, 298, 416, 794, 803, 818
BstSFI	CTRYAG	1 cut(s)	807
BstSLI	GKGCMC	1 cut(s)	985
BstV1I	GCAGC	2 cut(s)	318, 927
BstV2I	GAAGAC	3 cut(s)	48, 959, 1101
BstZ17I	GTATAC	1 cut(s)	624
BstZI	CGGCCG	1 cut(s)	786
Bsu15I	ATCGAT	1 cut(s)	405
BsuRI	GGCC	5 cut(s)	182, 287, 612, 788, 1048
BsuTUI	ATCGAT	1 cut(s)	405
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	3 cut(s)	22, 517, 526
BtsI	GCAGTG	1 cut(s)	860
BtsIMutI	CAGTG	3 cut(s)	594, 716, 860
BveI	ACCTGC	1 cut(s)	730
Cac8I	GCNNGC	3 cut(s)	79, 985, 1050
Cfr10I	RCCGGY	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	1046
ClaI	ATCGAT	1 cut(s)	405
CseI	GACGC	2 cut(s)	61, 425
Csp6I	GTAC	1 cut(s)	791
CviAII	CATG	2 cut(s)	219, 702
CviQI	GTAC	1 cut(s)	791
DdeI	CTNAG	3 cut(s)	501, 538, 633
DpnI	GATC	1 cut(s)	164
DpnII	GATC	1 cut(s)	162
EaeI	YGGCCR	2 cut(s)	180, 786
EagI	CGGCCG	1 cut(s)	786
Ecl136II	GAGCTC	1 cut(s)	671
EclXI	CGGCCG	1 cut(s)	786
Eco130I	CCWWGG	1 cut(s)	674
Eco147I	AGGCCT	1 cut(s)	287
Eco24I	GRGCYC	1 cut(s)	673
Eco52I	CGGCCG	1 cut(s)	786
Eco53kI	GAGCTC	1 cut(s)	671
Eco88I	CYCGRG	2 cut(s)	447, 664
EcoICRI	GAGCTC	1 cut(s)	671
EcoRI	GAATTC	1 cut(s)	155
EcoT14I	CCWWGG	1 cut(s)	674
EcoT38I	GRGCYC	1 cut(s)	673
ErhI	CCWWGG	1 cut(s)	674
FaeI	CATG	2 cut(s)	222, 705
FatI	CATG	2 cut(s)	218, 701
FblI	GTMKAC	2 cut(s)	483, 623
Fnu4HI	GCNGC	2 cut(s)	332, 916
FokI	GGATG	3 cut(s)	9, 524, 533
FriOI	GRGCYC	1 cut(s)	673
Fsp4HI	GCNGC	2 cut(s)	332, 916
FspBI	CTAG	2 cut(s)	920, 978
GluI	GCNGC	2 cut(s)	332, 916
GsuI	CTGGAG	1 cut(s)	340
HaeIII	GGCC	5 cut(s)	182, 287, 612, 788, 1048
HapII	CCGG	4 cut(s)	118, 183, 328, 534
HgaI	GACGC	2 cut(s)	61, 425
Hin1I	GRCGYC	2 cut(s)	45, 417
Hin1II	CATG	2 cut(s)	222, 705
HinfI	GANTC	4 cut(s)	167, 530, 600, 953
HpaII	CCGG	4 cut(s)	118, 183, 328, 534
HphI	GGTGA	4 cut(s)	220, 259, 544, 950
Hpy166II	GTNNAC	3 cut(s)	484, 624, 983
Hpy188I	TCNGA	2 cut(s)	697, 958
Hpy188III	TCNNGA	7 cut(s)	49, 118, 160, 545, 666, 1083, 1091
Hpy8I	GTNNAC	3 cut(s)	484, 624, 983
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	4 cut(s)	250, 345, 675, 1028
HpyCH4III	ACNGT	2 cut(s)	178, 621
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	7 cut(s)	111, 643, 725, 755, 915, 983, 1074
HpyF10VI	GCNNNNNNNGC	7 cut(s)	78, 179, 298, 416, 794, 803, 818
HpyF3I	CTNAG	3 cut(s)	501, 538, 633
HpySE526I	ACGT	1 cut(s)	45
Hsp92I	GRCGYC	2 cut(s)	45, 417
Hsp92II	CATG	2 cut(s)	222, 705
Kpn2I	TCCGGA	1 cut(s)	117
Kzo9I	GATC	1 cut(s)	162
LmnI	GCTCC	2 cut(s)	668, 676
Lsp1109I	GCAGC	2 cut(s)	318, 927
LweI	GCATC	2 cut(s)	273, 397
MaeI	CTAG	2 cut(s)	920, 978
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	4 cut(s)	90, 272, 359, 457
MalI	GATC	1 cut(s)	164
MboI	GATC	1 cut(s)	162
MboII	GAAGA	5 cut(s)	50, 53, 446, 959, 1106
MhlI	GDGCHC	2 cut(s)	673, 985
MluCI	AATT	9 cut(s)	7, 122, 155, 373, 380, 569, 658, 931, 1027
MlyI	GAGTC	2 cut(s)	176, 962
MroI	TCCGGA	1 cut(s)	117
MseI	TTAA	3 cut(s)	209, 465, 1026
MspA1I	CMGCKG	1 cut(s)	81
MspI	CCGG	4 cut(s)	118, 183, 328, 534
Mva1269I	GAATGC	2 cut(s)	111, 1008
MwoI	GCNNNNNNNGC	7 cut(s)	78, 179, 298, 416, 794, 803, 818
NdeII	GATC	1 cut(s)	162
NlaIII	CATG	2 cut(s)	222, 705
NlaIV	GGNNCC	1 cut(s)	1047
NmeAIII	GCCGAG	1 cut(s)	764
NmuCI	GTSAC	4 cut(s)	90, 272, 359, 457
PaeR7I	CTCGAG	1 cut(s)	447
PceI	AGGCCT	1 cut(s)	287
PctI	GAATGC	2 cut(s)	111, 1008
PfeI	GAWTC	2 cut(s)	530, 600
PkrI	GCNGC	2 cut(s)	333, 917
PleI	GAGTC	2 cut(s)	175, 961
PpsI	GAGTC	2 cut(s)	175, 961
PsiI	TTATAA	1 cut(s)	347
Psp124BI	GAGCTC	1 cut(s)	673
PspN4I	GGNNCC	1 cut(s)	1047
PspPI	GGNCC	1 cut(s)	1046
PspXI	VCTCGAGB	1 cut(s)	447
RsaI	GTAC	1 cut(s)	792
RsaNI	GTAC	1 cut(s)	791
SacI	GAGCTC	1 cut(s)	673
SaqAI	TTAA	3 cut(s)	209, 465, 1026
SatI	GCNGC	2 cut(s)	332, 916
Sau3AI	GATC	1 cut(s)	162
Sau96I	GGNCC	1 cut(s)	1046
SchI	GAGTC	2 cut(s)	176, 962
SduI	GDGCHC	2 cut(s)	673, 985
SfaNI	GCATC	2 cut(s)	273, 397
SfcI	CTRYAG	1 cut(s)	807
Sfr274I	CTCGAG	1 cut(s)	447
SlaI	CTCGAG	1 cut(s)	447
SmlI	CTYRAG	1 cut(s)	447
SmoI	CTYRAG	1 cut(s)	447
Sse9I	AATT	9 cut(s)	7, 122, 155, 373, 380, 569, 658, 931, 1027
SseBI	AGGCCT	1 cut(s)	287
SsiI	CCGC	3 cut(s)	60, 81, 851
SspMI	CTAG	2 cut(s)	920, 978
SstI	GAGCTC	1 cut(s)	673
StuI	AGGCCT	1 cut(s)	287
StyI	CCWWGG	1 cut(s)	674
TaaI	ACNGT	2 cut(s)	178, 621
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	5 cut(s)	165, 282, 405, 448, 996
TasI	AATT	9 cut(s)	7, 122, 155, 373, 380, 569, 658, 931, 1027
TfiI	GAWTC	2 cut(s)	530, 600
Tru1I	TTAA	3 cut(s)	209, 465, 1026
Tru9I	TTAA	3 cut(s)	209, 465, 1026
TscAI	CASTG	3 cut(s)	601, 716, 860
TseFI	GTSAC	4 cut(s)	90, 272, 359, 457
TseI	GCWGC	2 cut(s)	331, 915
Tsp45I	GTSAC	4 cut(s)	90, 272, 359, 457
TspDTI	ATGAA	4 cut(s)	51, 732, 860, 915
TspGWI	ACGGA	1 cut(s)	1049
TspRI	CASTG	3 cut(s)	601, 716, 860
VneI	GTGCAC	1 cut(s)	981
XapI	RAATTY	3 cut(s)	122, 155, 931
XcmI	CCANNNNNNNNNTGG	2 cut(s)	451, 995
XhoI	CTCGAG	1 cut(s)	447
XmiI	GTMKAC	2 cut(s)	483, 623
XspI	CTAG	2 cut(s)	920, 978
ZraI	GACGTC	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.