Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001981.1

Orthogroup ID

OG0017409

Physical Location & Seq

Genomic Coordinates Forward (+)

81735 .. 82382

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001981.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atggggagcttgtggaattacaactttcaacatccccctaaagatgaagaagacgtcaagaacattaacgctttggggaccatcaccgtcgggttcttgtcactcttattactcttctgccttctctggaggtttctggtgttcaataatccccaaagcgcagaattccagatcgagtcggcgaccgtggccggactaaaggtcgatggctctctgttgagtggcacatgggatttcacccttgttgccacaaaccccaacaagaaggtcagcatcacctgtgacagcatcgaggcctcggtatacaagcatggcatacccttctacgccacgaaccagctgccttccttctttataaactcctccagtcacaaccgtgtcaatttcaaattggatgtagtcagccgttatatctacgctggtgacgccgttgaaatcattcaagaaaagaccactccaggtttggtcacatttaagctctggctggtggtagtcttcacttataggactaagtttttggatgtctgggatatagaagattccggcttaatcacgtatgccacctgtgagccggttccatttgtgttttccccaaataatgacactggaatttttacaggtcagtcaactacatgccaccgagggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

215

Amino Acids

24.1

Weight (kDa)

5.3

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017409)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0336471
rosa_laevigata	RLG00000029361 RLG00000029362 RLG00000029364 RLG00000029367
rosa_multiflora	Rmu_sc0001981.1_g000028 Rmu_sc0001981.1_g000047
rosa_roxburghii	Rroxscaffold_4G00315390 Rroxscaffold_4G00315550 Rroxscaffold_4G00315560 Rroxscaffold_4G00315620
rosa_rugosa	Rorug04G0097400
rosa_samantha	Rh1BG114700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	356
AatII	GACGTC	1 cut(s)	57
AccI	GTMKAC	1 cut(s)	303
AcoI	YGGCCR	1 cut(s)	189
AcsI	RAATTY	2 cut(s)	164, 609
AcyI	GRCGYC	2 cut(s)	54, 426
AgsI	TTSAA	5 cut(s)	29, 145, 388, 434, 443
AhdI	GACNNNNNGTC	1 cut(s)	200
AjnI	CCWGG	1 cut(s)	457
AleI	CACNNNNGTG	1 cut(s)	375
AluBI	AGCT	3 cut(s)	9, 340, 478
AluI	AGCT	3 cut(s)	9, 340, 478
AoxI	GGCC	2 cut(s)	189, 294
ApeKI	GCWGC	1 cut(s)	340
ApoI	RAATTY	2 cut(s)	164, 609
ArsI	GACNNNNNNTTYG	2 cut(s)	499, 531
Asp700I	GAANNNNTTC	1 cut(s)	438
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	78
AsuHPI	GGTGA	4 cut(s)	76, 229, 268, 434
AvaII	GGWCC	1 cut(s)	78
BbsI	GAAGAC	2 cut(s)	57, 487
BbvI	GCAGC	1 cut(s)	327
BccI	CCATC	2 cut(s)	89, 200
BceAI	ACGGC	2 cut(s)	390, 413
BcgI	CGANNNNNNTGC	2 cut(s)	322, 356
BciT130I	CCWGG	1 cut(s)	459
BisI	GCNGC	1 cut(s)	341
BlsI	GCNGC	1 cut(s)	342
Bme1390I	CCNGG	1 cut(s)	459
Bme18I	GGWCC	1 cut(s)	78
BmeRI	GACNNNNNGTC	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	2 cut(s)	79, 576
BmrFI	CCNGG	1 cut(s)	459
BmsI	GCATC	2 cut(s)	282, 297
BpiI	GAAGAC	2 cut(s)	57, 487
BpmI	CTGGAG	3 cut(s)	148, 349, 441
BsaAI	YACGTR	1 cut(s)	555
BsaHI	GRCGYC	2 cut(s)	54, 426
BsaJI	CCNNGG	3 cut(s)	186, 297, 640
Bse118I	RCCGGY	1 cut(s)	571
Bse1I	ACTGG	2 cut(s)	366, 610
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	3 cut(s)	186, 297, 640
BseGI	GGATG	3 cut(s)	31, 400, 526
BseNI	ACTGG	2 cut(s)	366, 610
BseRI	GAGGAG	1 cut(s)	352
BseXI	GCAGC	1 cut(s)	327
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	2 cut(s)	191, 296
BsiEI	CGRYCG	1 cut(s)	186
BsiSI	CCGG	3 cut(s)	192, 543, 572
BslFI	GGGAC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	91
BsnI	GGCC	2 cut(s)	191, 296
Bsp143I	GATC	1 cut(s)	171
BspANI	GGCC	2 cut(s)	191, 296
BspLI	GGNNCC	2 cut(s)	79, 576
BsrFI	RCCGGY	1 cut(s)	571
BsrI	ACTGG	2 cut(s)	366, 610
BssAI	RCCGGY	1 cut(s)	571
BssECI	CCNNGG	3 cut(s)	186, 297, 640
BssMI	GATC	1 cut(s)	171
BssNAI	GTATAC	1 cut(s)	304
BssNI	GRCGYC	2 cut(s)	54, 426
Bst1107I	GTATAC	1 cut(s)	304
Bst2UI	CCWGG	1 cut(s)	459
Bst4CI	ACNGT	3 cut(s)	88, 187, 377
Bst6I	CTCTTC	1 cut(s)	119
BstACI	GRCGYC	2 cut(s)	54, 426
BstBAI	YACGTR	1 cut(s)	555
BstDEI	CTNAG	1 cut(s)	510
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	3 cut(s)	31, 400, 526
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	1 cut(s)	174
BstMBI	GATC	1 cut(s)	171
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 425
BstNI	CCWGG	1 cut(s)	459
BstNSI	RCATGY	1 cut(s)	636
BstSCI	CCNGG	1 cut(s)	457
BstV1I	GCAGC	1 cut(s)	327
BstV2I	GAAGAC	2 cut(s)	57, 487
BstZ17I	GTATAC	1 cut(s)	304
BsuRI	GGCC	2 cut(s)	191, 296
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	3 cut(s)	31, 400, 526
BtsIMutI	CAGTG	1 cut(s)	603
CfoI	GCGC	1 cut(s)	161
Cfr10I	RCCGGY	1 cut(s)	571
Cfr13I	GGNCC	1 cut(s)	78
CseI	GACGC	1 cut(s)	434
CviAII	CATG	3 cut(s)	228, 311, 633
DdeI	CTNAG	1 cut(s)	510
DpnI	GATC	1 cut(s)	173
DpnII	GATC	1 cut(s)	171
DriI	GACNNNNNGTC	1 cut(s)	200
EaeI	YGGCCR	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	119
Eam1105I	GACNNNNNGTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	119
Eco147I	AGGCCT	1 cut(s)	296
Eco47I	GGWCC	1 cut(s)	78
EcoRI	GAATTC	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	457
FaeI	CATG	3 cut(s)	231, 314, 636
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	3 cut(s)	227, 310, 632
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	1 cut(s)	341
FokI	GGATG	3 cut(s)	18, 407, 533
Fsp4HI	GCNGC	1 cut(s)	341
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	1 cut(s)	341
GsuI	CTGGAG	3 cut(s)	148, 349, 441
HaeIII	GGCC	2 cut(s)	191, 296
HapII	CCGG	3 cut(s)	192, 543, 572
HgaI	GACGC	1 cut(s)	434
HhaI	GCGC	1 cut(s)	161
Hin1I	GRCGYC	2 cut(s)	54, 426
Hin1II	CATG	3 cut(s)	231, 314, 636
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HincII	GTYRAC	1 cut(s)	627
HindII	GTYRAC	1 cut(s)	627
HinfI	GANTC	2 cut(s)	176, 539
HpaII	CCGG	3 cut(s)	192, 543, 572
HphI	GGTGA	4 cut(s)	76, 229, 268, 434
Hpy166II	GTNNAC	2 cut(s)	304, 627
Hpy188III	TCNNGA	4 cut(s)	58, 127, 169, 443
Hpy8I	GTNNAC	2 cut(s)	304, 627
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	5 cut(s)	131, 259, 331, 354, 358
HpyCH4III	ACNGT	3 cut(s)	88, 187, 377
HpyCH4IV	ACGT	2 cut(s)	54, 554
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 425
HpyF3I	CTNAG	1 cut(s)	510
HpySE526I	ACGT	2 cut(s)	54, 554
Hsp92I	GRCGYC	2 cut(s)	54, 426
Hsp92II	CATG	3 cut(s)	231, 314, 636
HspAI	GCGC	1 cut(s)	159
Kzo9I	GATC	1 cut(s)	171
LmnI	GCTCC	1 cut(s)	6
Lsp1109I	GCAGC	1 cut(s)	327
LweI	GCATC	2 cut(s)	282, 297
MaeII	ACGT	2 cut(s)	54, 554
MaeIII	GTNAC	5 cut(s)	99, 281, 368, 422, 466
MalI	GATC	1 cut(s)	173
MboI	GATC	1 cut(s)	171
MboII	GAAGA	5 cut(s)	59, 62, 106, 487, 548
MluCI	AATT	5 cut(s)	16, 164, 382, 389, 609
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	5 cut(s)	123, 286, 307, 373, 635
MroXI	GAANNNNTTC	1 cut(s)	438
MseI	TTAA	3 cut(s)	66, 474, 548
MslI	CAYNNNNRTG	1 cut(s)	375
MspA1I	CMGCKG	1 cut(s)	340
MspI	CCGG	3 cut(s)	192, 543, 572
MspR9I	CCNGG	1 cut(s)	459
MvaI	CCWGG	1 cut(s)	459
MwoI	GCNNNNNNNGC	2 cut(s)	188, 425
NdeII	GATC	1 cut(s)	171
NlaIII	CATG	3 cut(s)	231, 314, 636
NlaIV	GGNNCC	2 cut(s)	79, 576
NmuCI	GTSAC	5 cut(s)	99, 281, 368, 422, 466
NspI	RCATGY	1 cut(s)	636
OliI	CACNNNNGTG	1 cut(s)	375
PceI	AGGCCT	1 cut(s)	296
PdmI	GAANNNNTTC	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	539
PkrI	GCNGC	1 cut(s)	342
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
Ppu21I	YACGTR	1 cut(s)	555
PsiI	TTATAA	1 cut(s)	356
Psp6I	CCWGG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	457
PspN4I	GGNNCC	2 cut(s)	79, 576
PspPI	GGNCC	1 cut(s)	78
PvuII	CAGCTG	1 cut(s)	340
RseI	CAYNNNNRTG	1 cut(s)	375
SaqAI	TTAA	3 cut(s)	66, 474, 548
SatI	GCNGC	1 cut(s)	341
Sau3AI	GATC	1 cut(s)	171
Sau96I	GGNCC	1 cut(s)	78
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	459
SfaNI	GCATC	2 cut(s)	282, 297
SinI	GGWCC	1 cut(s)	78
SmiMI	CAYNNNNRTG	1 cut(s)	375
Sse9I	AATT	5 cut(s)	16, 164, 382, 389, 609
SseBI	AGGCCT	1 cut(s)	296
StuI	AGGCCT	1 cut(s)	296
StyD4I	CCNGG	1 cut(s)	457
TaaI	ACNGT	3 cut(s)	88, 187, 377
TaiI	ACGT	2 cut(s)	57, 557
TaqI	TCGA	3 cut(s)	174, 204, 291
TasI	AATT	5 cut(s)	16, 164, 382, 389, 609
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	3 cut(s)	66, 474, 548
Tru9I	TTAA	3 cut(s)	66, 474, 548
TscAI	CASTG	1 cut(s)	610
TseFI	GTSAC	5 cut(s)	99, 281, 368, 422, 466
TseI	GCWGC	1 cut(s)	340
Tsp45I	GTSAC	5 cut(s)	99, 281, 368, 422, 466
TspDTI	ATGAA	1 cut(s)	60
TspRI	CASTG	1 cut(s)	610
VpaK11BI	GGWCC	1 cut(s)	78
XapI	RAATTY	2 cut(s)	164, 609
XceI	RCATGY	1 cut(s)	636
XcmI	CCANNNNNNNNNTGG	1 cut(s)	460
XmiI	GTMKAC	1 cut(s)	303
XmnI	GAANNNNTTC	1 cut(s)	438
ZraI	GACGTC	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.