Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0017409

Physical Location & Seq

Genomic Coordinates Reverse (-)

15328378 .. 15332189

Gene Structure 3812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0097400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGGCAGCTAAAAATGCCAAGAGAGGGATAAGGAGGTTCTTAGAACCATCTACTGGTGACAGAGTTGTTCAAGAAAAATCTGAATATGGTCATGTCAGATCAAAAAGATTGAAAAGAATGTTTCATCCAGAAATTGTTGGAGGATCTAATGAATGTCGGAATGAAATGCAATTAAAAGGTGATGATGAAAACGCTGCTGAAGGAATGACAACTAAGGATGCCAATAGAGGAAAGAAAAGGTTGTTAAAACGACCTATTACTAAGAGAATTAATGAAGGAAAAACTGAATGCAGTCATTGTTTTGCCGAGAGATTAATGAAAAAGATAATCAATGTCAGAGTGAGACCGATTTCAGAGATCAACGTTCGTGACTATTTGGTCAAGCGTCATATCAACAAAACAGACAAGTTTCAAAAAAATCAAGAAAATCACATGAAAAGGTTAACTGTGAAATACGAAGACTCGGGGGATAATGTGTACTCATGTAACCATTGTGATGCATGCTTTTGGCTTGGAGAAGCTATTAAAAGATCAACTTCAAATGCATCAATTATCTATACAAATTGTTGTAGGAAAGGCGAAATCAAACTTGAAAGATCAAAACCAACACCAACTTTCCTCGAGCATTTATTAAATCCAGACAATGGTTCAGAAAGCAGATCATTCAGAGAAAACATAAGAATTTATAATTCAATGTTTGCTTTTACATCAATGGGAGCAAATATTGACTACAAAATAAATAATGGTTTAGGTCCTTATGTTTTCAAAATTAGTGGTCAAGTACATCATTTAATGGGTTCTTTATTACCCTCTAATGGAGAATCTCCTAAATATGCTCAATTATATATATACGATACAAAAAATGAAGTTTCAAATCGCATTAATGCAATTGATCCGAATCACAATAATGTGAATATCAAATCAAATATAGTTGAAGGACTCATTAAAATTTACAGAGTATACGTAACAATCGAAGACGGGGAAAATGAAGCCATACTGATTGTAATGGGAGAAGCAGCTGAACAACTCTTTGGCAATACCTGTCCAGAATTACTAAACAAACAACAAGAACCTATAAGACAAGCATTGCCAAAGGAGATTGAAAATACAATCGGCCAGGAATACCTCTTCGAGATTCAACCAAAATCTCATGGTGAACTCATTGTGAAATCTGTTTCTCCAGATCCAGAAAGTTTTGTAGCAGTATCAGAACAACATCCAACAACCGCAACACCCGATCATGCTAGCACAGAAAGAAAAAGAACAGTGGAAACAAGTAAGAAAGCACTCTTCACCACTGAACAAGAGAAAAAAAGCAAAAGGCAATCCCGGCATCAAGGAACTACATCATCATCCCTTCAAAGCGAGCAACATGAAACACAAACAAGTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

464

Amino Acids

52.92

Weight (kDa)

9.15

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017409)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0336471
rosa_laevigata	RLG00000029361 RLG00000029362 RLG00000029364 RLG00000029367
rosa_multiflora	Rmu_sc0001981.1_g000028 Rmu_sc0001981.1_g000047
rosa_roxburghii	Rroxscaffold_4G00315390 Rroxscaffold_4G00315550 Rroxscaffold_4G00315560 Rroxscaffold_4G00315620
rosa_rugosa	Rorug04G0097400
rosa_samantha	Rh1BG114700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	687
AasI	GACNNNNNNGTC	1 cut(s)	377
AccB7I	CCANNNNNTGG	2 cut(s)	53, 644
AccI	GTMKAC	1 cut(s)	960
AciI	CCGC	1 cut(s)	1227
AclI	AACGTT	1 cut(s)	363
AclWI	GGATC	3 cut(s)	151, 887, 1178
AcoI	YGGCCR	1 cut(s)	1114
AcsI	RAATTY	2 cut(s)	681, 948
AcuI	CTGAAG	1 cut(s)	219
AfaI	GTAC	2 cut(s)	479, 783
AfiI	CCNNNNNNNGG	4 cut(s)	24, 53, 644, 815
AjnI	CCWGG	1 cut(s)	1116
AjuI	GAANNNNNNNTTGG	2 cut(s)	1014, 1046
AluBI	AGCT	3 cut(s)	8, 521, 1019
AluI	AGCT	3 cut(s)	8, 521, 1019
Alw26I	GTCTC	1 cut(s)	337
AlwI	GGATC	3 cut(s)	151, 887, 1178
Ama87I	CYCGRG	2 cut(s)	463, 620
AoxI	GGCC	1 cut(s)	1114
ApeKI	GCWGC	3 cut(s)	5, 194, 1016
ApoI	RAATTY	2 cut(s)	681, 948
AseI	ATTAAT	3 cut(s)	270, 314, 882
AspS9I	GGNCC	1 cut(s)	752
AsuC2I	CCSGG	1 cut(s)	1330
AsuHPI	GGTGA	4 cut(s)	68, 191, 1166, 1285
AsuNHI	GCTAGC	1 cut(s)	1244
AvaI	CYCGRG	2 cut(s)	463, 620
AvaII	GGWCC	1 cut(s)	752
BbsI	GAAGAC	2 cut(s)	465, 981
BbvI	GCAGC	3 cut(s)	17, 181, 1028
BccI	CCATC	1 cut(s)	55
BciT130I	CCWGG	1 cut(s)	1118
BcnI	CCSGG	1 cut(s)	1330
BcoDI	GTCTC	1 cut(s)	337
BfaI	CTAG	1 cut(s)	1245
BisI	GCNGC	3 cut(s)	6, 195, 1017
BlsI	GCNGC	3 cut(s)	7, 196, 1018
Bme1390I	CCNGG	2 cut(s)	1118, 1330
Bme18I	GGWCC	1 cut(s)	752
BmeT110I	CYCGRG	2 cut(s)	463, 620
BmgT120I	GGNCC	1 cut(s)	752
BmrFI	CCNGG	2 cut(s)	1118, 1330
BmsI	GCATC	4 cut(s)	208, 487, 554, 1342
BmtI	GCTAGC	1 cut(s)	1248
BpiI	GAAGAC	2 cut(s)	465, 981
BpmI	CTGGAG	1 cut(s)	1164
BpuMI	CCSGG	1 cut(s)	1330
BsaAI	YACGTR	1 cut(s)	964
BsaBI	GATNNNNATC	1 cut(s)	897
BsaI	GGTCTC	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	4 cut(s)	24, 53, 644, 815
Bse1I	ACTGG	1 cut(s)	58
Bse3DI	GCAATG	1 cut(s)	1085
Bse8I	GATNNNNATC	1 cut(s)	897
BseBI	CCWGG	1 cut(s)	1118
BseGI	GGATG	4 cut(s)	124, 223, 1216, 1352
BseJI	GATNNNNATC	1 cut(s)	897
BseLI	CCNNNNNNNGG	4 cut(s)	24, 53, 644, 815
BseMI	GCAATG	1 cut(s)	1085
BseNI	ACTGG	1 cut(s)	58
BseXI	GCAGC	3 cut(s)	17, 181, 1028
BshFI	GGCC	1 cut(s)	1116
BsiHKCI	CYCGRG	2 cut(s)	463, 620
BsiSI	CCGG	1 cut(s)	1330
BslI	CCNNNNNNNGG	4 cut(s)	24, 53, 644, 815
BsmAI	GTCTC	1 cut(s)	337
BsmI	GAATGC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	1116
Bso31I	GGTCTC	1 cut(s)	337
BsoBI	CYCGRG	2 cut(s)	463, 620
Bsp143I	GATC	9 cut(s)	98, 143, 357, 530, 596, 659, 892, 1183, 1237
BspACI	CCGC	1 cut(s)	1227
BspANI	GGCC	1 cut(s)	1116
BspOI	GCTAGC	1 cut(s)	1248
BspPI	GGATC	3 cut(s)	151, 887, 1178
BspTNI	GGTCTC	1 cut(s)	337
BsrDI	GCAATG	1 cut(s)	1085
BsrI	ACTGG	1 cut(s)	58
BssMI	GATC	9 cut(s)	98, 143, 357, 530, 596, 659, 892, 1183, 1237
BssNAI	GTATAC	1 cut(s)	961
Bst1107I	GTATAC	1 cut(s)	961
Bst2UI	CCWGG	1 cut(s)	1118
Bst4CI	ACNGT	2 cut(s)	448, 1267
Bst6I	CTCTTC	2 cut(s)	1133, 1295
BstBAI	YACGTR	1 cut(s)	964
BstC8I	GCNNGC	3 cut(s)	502, 1246, 1367
BstDEI	CTNAG	3 cut(s)	40, 213, 261
BstF5I	GGATG	4 cut(s)	124, 223, 1216, 1352
BstKTI	GATC	9 cut(s)	101, 146, 360, 533, 599, 662, 895, 1186, 1240
BstMAI	GTCTC	1 cut(s)	337
BstMBI	GATC	9 cut(s)	98, 143, 357, 530, 596, 659, 892, 1183, 1237
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 1330
BstNI	CCWGG	1 cut(s)	1118
BstNSI	RCATGY	1 cut(s)	504
BstSCI	CCNGG	2 cut(s)	1116, 1328
BstSNI	TACGTA	1 cut(s)	964
BstV1I	GCAGC	3 cut(s)	17, 181, 1028
BstV2I	GAAGAC	2 cut(s)	465, 981
BstX2I	RGATCY	2 cut(s)	143, 1183
BstYI	RGATCY	2 cut(s)	143, 1183
BstZ17I	GTATAC	1 cut(s)	961
BsuRI	GGCC	1 cut(s)	1116
BtsCI	GGATG	4 cut(s)	124, 223, 1216, 1352
BtsIMutI	CAGTG	2 cut(s)	1272, 1296
Cac8I	GCNNGC	3 cut(s)	502, 1246, 1367
Cfr13I	GGNCC	1 cut(s)	752
CseI	GACGC	1 cut(s)	374
Csp6I	GTAC	2 cut(s)	478, 782
CspCI	CAANNNNNGTGG	2 cut(s)	754, 789
CviAII	CATG	7 cut(s)	92, 433, 483, 501, 1151, 1241, 1373
CviJI	RGCY	6 cut(s)	8, 511, 521, 992, 1019, 1116
CviKI_1	RGCY	6 cut(s)	8, 511, 521, 992, 1019, 1116
CviQI	GTAC	2 cut(s)	478, 782
DdeI	CTNAG	3 cut(s)	40, 213, 261
DpnI	GATC	9 cut(s)	100, 145, 359, 532, 598, 661, 894, 1185, 1239
DpnII	GATC	9 cut(s)	98, 143, 357, 530, 596, 659, 892, 1183, 1237
DrdI	GACNNNNNNGTC	1 cut(s)	377
DseDI	GACNNNNNNGTC	1 cut(s)	377
EaeI	YGGCCR	1 cut(s)	1114
Eam1104I	CTCTTC	2 cut(s)	1133, 1295
EarI	CTCTTC	2 cut(s)	1133, 1295
Eco105I	TACGTA	1 cut(s)	964
Eco31I	GGTCTC	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	752
Eco57I	CTGAAG	1 cut(s)	219
Eco88I	CYCGRG	2 cut(s)	463, 620
EcoO109I	RGGNCCY	1 cut(s)	752
EcoRII	CCWGG	1 cut(s)	1116
EcoT22I	ATGCAT	2 cut(s)	502, 547
FaeI	CATG	7 cut(s)	95, 436, 486, 504, 1154, 1244, 1376
FalI	AAGNNNNNCTT	2 cut(s)	520, 552
FatI	CATG	7 cut(s)	91, 432, 482, 500, 1150, 1240, 1372
FblI	GTMKAC	1 cut(s)	960
Fnu4HI	GCNGC	3 cut(s)	6, 195, 1017
FokI	GGATG	4 cut(s)	111, 230, 1203, 1339
Fsp4HI	GCNGC	3 cut(s)	6, 195, 1017
FspBI	CTAG	1 cut(s)	1245
GluI	GCNGC	3 cut(s)	6, 195, 1017
GsuI	CTGGAG	1 cut(s)	1164
HaeIII	GGCC	1 cut(s)	1116
HapII	CCGG	1 cut(s)	1330
HgaI	GACGC	1 cut(s)	374
Hin1II	CATG	7 cut(s)	95, 436, 486, 504, 1154, 1244, 1376
HincII	GTYRAC	1 cut(s)	444
HindII	GTYRAC	1 cut(s)	444
HinfI	GANTC	5 cut(s)	461, 821, 898, 939, 1135
HpaI	GTTAAC	1 cut(s)	444
HpaII	CCGG	1 cut(s)	1330
HphI	GGTGA	4 cut(s)	68, 191, 1166, 1285
Hpy166II	GTNNAC	4 cut(s)	444, 478, 961, 1157
Hpy188I	TCNGA	9 cut(s)	82, 98, 159, 338, 355, 652, 668, 897, 1210
Hpy188III	TCNNGA	9 cut(s)	71, 128, 368, 422, 638, 1046, 1132, 1181, 1187
Hpy8I	GTNNAC	4 cut(s)	444, 478, 961, 1157
HpyAV	CCTTC	4 cut(s)	194, 269, 929, 1367
HpyCH4III	ACNGT	2 cut(s)	448, 1267
HpyCH4IV	ACGT	2 cut(s)	363, 963
HpyCH4V	TGCA	5 cut(s)	169, 291, 500, 545, 887
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 1330
HpyF3I	CTNAG	3 cut(s)	40, 213, 261
HpySE526I	ACGT	2 cut(s)	363, 963
Hsp92II	CATG	7 cut(s)	95, 436, 486, 504, 1154, 1244, 1376
KspAI	GTTAAC	1 cut(s)	444
Kzo9I	GATC	9 cut(s)	98, 143, 357, 530, 596, 659, 892, 1183, 1237
LmnI	GCTCC	1 cut(s)	716
Lsp1109I	GCAGC	3 cut(s)	17, 181, 1028
LweI	GCATC	4 cut(s)	208, 487, 554, 1342
MaeI	CTAG	1 cut(s)	1245
MaeII	ACGT	2 cut(s)	363, 963
MaeIII	GTNAC	4 cut(s)	56, 368, 485, 964
MalI	GATC	9 cut(s)	100, 145, 359, 532, 598, 661, 894, 1185, 1239
MboI	GATC	9 cut(s)	98, 143, 357, 530, 596, 659, 892, 1183, 1237
MboII	GAAGA	4 cut(s)	470, 986, 1120, 1282
MfeI	CAATTG	1 cut(s)	888
MflI	RGATCY	2 cut(s)	143, 1183
MlyI	GAGTC	2 cut(s)	455, 933
MmeI	TCCRAC	3 cut(s)	118, 137, 1244
MnlI	CCTC	7 cut(s)	17, 27, 134, 221, 629, 820, 1136
Mph1103I	ATGCAT	2 cut(s)	502, 547
MslI	CAYNNNNRTG	2 cut(s)	495, 906
MspA1I	CMGCKG	1 cut(s)	1019
MspI	CCGG	1 cut(s)	1330
MspR9I	CCNGG	2 cut(s)	1118, 1330
MunI	CAATTG	1 cut(s)	888
Mva1269I	GAATGC	1 cut(s)	293
MvaI	CCWGG	1 cut(s)	1118
MwoI	GCNNNNNNNGC	2 cut(s)	14, 1330
NciI	CCSGG	1 cut(s)	1330
NdeII	GATC	9 cut(s)	98, 143, 357, 530, 596, 659, 892, 1183, 1237
NheI	GCTAGC	1 cut(s)	1244
NlaIII	CATG	7 cut(s)	95, 436, 486, 504, 1154, 1244, 1376
NmeAIII	GCCGAG	1 cut(s)	331
NmuCI	GTSAC	2 cut(s)	56, 368
NsiI	ATGCAT	2 cut(s)	502, 547
NspI	RCATGY	1 cut(s)	504
PaeI	GCATGC	1 cut(s)	504
PaeR7I	CTCGAG	1 cut(s)	620
PcsI	WCGNNNNNNNCGW	1 cut(s)	969
PctI	GAATGC	1 cut(s)	293
PfeI	GAWTC	3 cut(s)	821, 898, 1135
PflMI	CCANNNNNTGG	2 cut(s)	53, 644
PkrI	GCNGC	3 cut(s)	7, 196, 1018
PleI	GAGTC	2 cut(s)	455, 933
PpsI	GAGTC	2 cut(s)	455, 933
Ppu21I	YACGTR	1 cut(s)	964
PpuMI	RGGWCCY	1 cut(s)	752
PshBI	ATTAAT	3 cut(s)	270, 314, 882
PsiI	TTATAA	1 cut(s)	687
Psp1406I	AACGTT	1 cut(s)	363
Psp5II	RGGWCCY	1 cut(s)	752
Psp6I	CCWGG	1 cut(s)	1116
PspGI	CCWGG	1 cut(s)	1116
PspPI	GGNCC	1 cut(s)	752
PspPPI	RGGWCCY	1 cut(s)	752
PspXI	VCTCGAGB	1 cut(s)	620
PsuI	RGATCY	2 cut(s)	143, 1183
PvuII	CAGCTG	1 cut(s)	1019
RsaI	GTAC	2 cut(s)	479, 783
RsaNI	GTAC	2 cut(s)	478, 782
RseI	CAYNNNNRTG	2 cut(s)	495, 906
SatI	GCNGC	3 cut(s)	6, 195, 1017
Sau3AI	GATC	9 cut(s)	98, 143, 357, 530, 596, 659, 892, 1183, 1237
Sau96I	GGNCC	1 cut(s)	752
SchI	GAGTC	2 cut(s)	455, 933
ScrFI	CCNGG	2 cut(s)	1118, 1330
SfaNI	GCATC	4 cut(s)	208, 487, 554, 1342
Sfr274I	CTCGAG	1 cut(s)	620
SinI	GGWCC	1 cut(s)	752
SlaI	CTCGAG	1 cut(s)	620
SmiMI	CAYNNNNRTG	2 cut(s)	495, 906
SmlI	CTYRAG	1 cut(s)	620
SmoI	CTYRAG	1 cut(s)	620
SnaBI	TACGTA	1 cut(s)	964
SphI	GCATGC	1 cut(s)	504
SsiI	CCGC	1 cut(s)	1227
SspI	AATATT	1 cut(s)	724
SspMI	CTAG	1 cut(s)	1245
StyD4I	CCNGG	2 cut(s)	1116, 1328
TaaI	ACNGT	2 cut(s)	448, 1267
TaiI	ACGT	2 cut(s)	366, 966
TaqI	TCGA	3 cut(s)	621, 972, 1131
TaqII	GACCGA	1 cut(s)	361
TatI	WGTACW	2 cut(s)	477, 781
TfiI	GAWTC	3 cut(s)	821, 898, 1135
TscAI	CASTG	2 cut(s)	1272, 1303
TseFI	GTSAC	2 cut(s)	56, 368
TseI	GCWGC	3 cut(s)	5, 194, 1016
Tsp45I	GTSAC	2 cut(s)	56, 368
TspRI	CASTG	2 cut(s)	1272, 1303
Van91I	CCANNNNNTGG	2 cut(s)	53, 644
VpaK11BI	GGWCC	1 cut(s)	752
VspI	ATTAAT	3 cut(s)	270, 314, 882
XapI	RAATTY	2 cut(s)	681, 948
XceI	RCATGY	1 cut(s)	504
XhoI	CTCGAG	1 cut(s)	620
XmiI	GTMKAC	1 cut(s)	960
XspI	CTAG	1 cut(s)	1245
Zsp2I	ATGCAT	2 cut(s)	502, 547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.