Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0017409

Physical Location & Seq

Genomic Coordinates Forward (+)

37105225 .. 37106149

Gene Structure 925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029361

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGAATCCGAGCATGTACATTCGGCCAAACACAAGTGCACAACTCGAAACCAAGTTAGAAGTACTTGCAGCCCAACACATCTCTGTGTCTCTTCTTAACCTCTCCCCTCTTCTCTTTTCAGTGAAGCATATCAATCGCATGGGGAGCTTGTGGAATTACAACTTTGAACATCCCCCTAAAGATGAAGAAGACGTCAAGAACATTAACGCTATGGGGAGCATCACCGTCGGGTTCTTGTCACTCGTATTACTCTTCTGCCTTCTCTGGAGGTTTCTGGTGTTCAATAATCCCCAACGCGCAGAATTCCAGATCGAGTCGGCGACCGTGGCCGGACTAAAGGTCGATGGCTCTCTGTTGAGTGGCACATGGGATTTCACCCTTGTTGCCACAAACCCCAACAAGAAAGTCAGCATCACCTGTGACAACATCGAGGCCTCGGTATACAAGCATGGCATACCCTTCTACGCCACGAACCAGCTGCCTTCCTTCTTTATAAACTCCTCCAGTTATAACCGTGTCAATTTCAAATTGGGTGTAGTCAGCCGTTATATCTACGCTGATGACGCCGTTGAAATCTTTCAAGAAAAGACCACTCCAGGTTTGGTCACATTTAAGCTCTGGCTGGTGGTAGTCTTCACTTATAGGACTAAGTTTTTGGATGTCTGGGATATAGAAGATTCCGGCTTAATCACGTATGTCACCTGTGAGCCGGTTCCGTTTGTGTTTTCCCCAAATAATGACACTGGAATTTTTACAGGTCAGTCAACTATATGCCACCGAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

262

Amino Acids

29.44

Weight (kDa)

5.95

Isoelectric Point (pI)

40.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017409)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0336471
rosa_laevigata	RLG00000029361 RLG00000029362 RLG00000029364 RLG00000029367
rosa_multiflora	Rmu_sc0001981.1_g000028 Rmu_sc0001981.1_g000047
rosa_roxburghii	Rroxscaffold_4G00315390 Rroxscaffold_4G00315550 Rroxscaffold_4G00315560 Rroxscaffold_4G00315620
rosa_rugosa	Rorug04G0097400
rosa_samantha	Rh1BG114700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	494, 510
AatII	GACGTC	1 cut(s)	195
AccI	GTMKAC	1 cut(s)	441
AccII	CGCG	1 cut(s)	297
AcoI	YGGCCR	2 cut(s)	23, 327
AcsI	RAATTY	2 cut(s)	302, 747
AcyI	GRCGYC	2 cut(s)	192, 564
AfaI	GTAC	2 cut(s)	17, 63
AgsI	TTSAA	5 cut(s)	167, 283, 526, 572, 581
AhdI	GACNNNNNGTC	1 cut(s)	338
AjnI	CCWGG	1 cut(s)	595
AluBI	AGCT	3 cut(s)	147, 478, 616
AluI	AGCT	3 cut(s)	147, 478, 616
Alw21I	GWGCWC	1 cut(s)	40
Alw26I	GTCTC	1 cut(s)	93
Alw44I	GTGCAC	1 cut(s)	36
AoxI	GGCC	3 cut(s)	23, 327, 432
ApaLI	GTGCAC	1 cut(s)	36
ApeKI	GCWGC	2 cut(s)	68, 478
ApoI	RAATTY	2 cut(s)	302, 747
ArsI	GACNNNNNNTTYG	2 cut(s)	637, 669
Asp700I	GAANNNNTTC	1 cut(s)	576
AspLEI	GCGC	1 cut(s)	299
AsuHPI	GGTGA	4 cut(s)	214, 367, 406, 691
BaeGI	GKGCMC	1 cut(s)	40
BbsI	GAAGAC	2 cut(s)	195, 625
Bbv12I	GWGCWC	1 cut(s)	40
BbvI	GCAGC	2 cut(s)	80, 465
BccI	CCATC	1 cut(s)	338
BceAI	ACGGC	2 cut(s)	528, 551
BcgI	CGANNNNNNTGC	6 cut(s)	116, 150, 208, 242, 460, 494
BciT130I	CCWGG	1 cut(s)	597
BcoDI	GTCTC	1 cut(s)	93
BisI	GCNGC	2 cut(s)	69, 479
BlsI	GCNGC	2 cut(s)	70, 480
BmcAI	AGTACT	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	597
BmeRI	GACNNNNNGTC	1 cut(s)	338
BmiI	GGNNCC	1 cut(s)	714
BmrFI	CCNGG	1 cut(s)	597
BmsI	GCATC	2 cut(s)	228, 420
BpiI	GAAGAC	2 cut(s)	195, 625
BpmI	CTGGAG	3 cut(s)	286, 487, 579
BsaAI	YACGTR	1 cut(s)	693
BsaHI	GRCGYC	2 cut(s)	192, 564
BsaJI	CCNNGG	3 cut(s)	324, 435, 778
Bse118I	RCCGGY	1 cut(s)	709
Bse1I	ACTGG	2 cut(s)	504, 748
BseBI	CCWGG	1 cut(s)	597
BseDI	CCNNGG	3 cut(s)	324, 435, 778
BseGI	GGATG	2 cut(s)	169, 664
BseNI	ACTGG	2 cut(s)	504, 748
BseRI	GAGGAG	1 cut(s)	490
BseSI	GKGCMC	1 cut(s)	40
BseXI	GCAGC	2 cut(s)	80, 465
Bsh1236I	CGCG	1 cut(s)	297
Bsh1285I	CGRYCG	1 cut(s)	324
BshFI	GGCC	3 cut(s)	25, 329, 434
BsiEI	CGRYCG	1 cut(s)	324
BsiHKAI	GWGCWC	1 cut(s)	40
BsiSI	CCGG	3 cut(s)	330, 681, 710
BsmAI	GTCTC	1 cut(s)	93
BsnI	GGCC	3 cut(s)	25, 329, 434
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp1407I	TGTACA	1 cut(s)	15
Bsp143I	GATC	1 cut(s)	309
BspANI	GGCC	3 cut(s)	25, 329, 434
BspFNI	CGCG	1 cut(s)	297
BspLI	GGNNCC	1 cut(s)	714
BsrFI	RCCGGY	1 cut(s)	709
BsrGI	TGTACA	1 cut(s)	15
BsrI	ACTGG	2 cut(s)	504, 748
BssAI	RCCGGY	1 cut(s)	709
BssECI	CCNNGG	3 cut(s)	324, 435, 778
BssMI	GATC	1 cut(s)	309
BssNAI	GTATAC	1 cut(s)	442
BssNI	GRCGYC	2 cut(s)	192, 564
Bst1107I	GTATAC	1 cut(s)	442
Bst2UI	CCWGG	1 cut(s)	597
Bst4CI	ACNGT	3 cut(s)	226, 325, 515
Bst6I	CTCTTC	3 cut(s)	96, 114, 257
BstACI	GRCGYC	2 cut(s)	192, 564
BstAUI	TGTACA	1 cut(s)	15
BstBAI	YACGTR	1 cut(s)	693
BstDEI	CTNAG	1 cut(s)	648
BstDSI	CCRYGG	1 cut(s)	324
BstF5I	GGATG	2 cut(s)	169, 664
BstFNI	CGCG	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	1 cut(s)	312
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	1 cut(s)	309
BstMCI	CGRYCG	1 cut(s)	324
BstMWI	GCNNNNNNNGC	3 cut(s)	144, 326, 563
BstNI	CCWGG	1 cut(s)	597
BstNSI	RCATGY	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	595
BstSLI	GKGCMC	1 cut(s)	40
BstUI	CGCG	1 cut(s)	297
BstV1I	GCAGC	2 cut(s)	80, 465
BstV2I	GAAGAC	2 cut(s)	195, 625
BstZ17I	GTATAC	1 cut(s)	442
BsuRI	GGCC	3 cut(s)	25, 329, 434
BtgI	CCRYGG	1 cut(s)	324
BtsCI	GGATG	2 cut(s)	169, 664
BtsIMutI	CAGTG	2 cut(s)	126, 741
CfoI	GCGC	1 cut(s)	299
Cfr10I	RCCGGY	1 cut(s)	709
CseI	GACGC	1 cut(s)	572
Csp6I	GTAC	2 cut(s)	16, 62
CviAII	CATG	4 cut(s)	13, 139, 366, 449
CviQI	GTAC	2 cut(s)	16, 62
DdeI	CTNAG	1 cut(s)	648
DpnI	GATC	1 cut(s)	311
DpnII	GATC	1 cut(s)	309
DriI	GACNNNNNGTC	1 cut(s)	338
EaeI	YGGCCR	2 cut(s)	23, 327
Eam1104I	CTCTTC	3 cut(s)	96, 114, 257
Eam1105I	GACNNNNNGTC	1 cut(s)	338
EarI	CTCTTC	3 cut(s)	96, 114, 257
Eco147I	AGGCCT	1 cut(s)	434
EcoRI	GAATTC	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	595
FaeI	CATG	4 cut(s)	16, 142, 369, 452
FatI	CATG	4 cut(s)	12, 138, 365, 448
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	2 cut(s)	69, 479
FokI	GGATG	2 cut(s)	156, 671
Fsp4HI	GCNGC	2 cut(s)	69, 479
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	2 cut(s)	69, 479
GsuI	CTGGAG	3 cut(s)	286, 487, 579
HaeIII	GGCC	3 cut(s)	25, 329, 434
HapII	CCGG	3 cut(s)	330, 681, 710
HgaI	GACGC	1 cut(s)	572
HhaI	GCGC	1 cut(s)	299
Hin1I	GRCGYC	2 cut(s)	192, 564
Hin1II	CATG	4 cut(s)	16, 142, 369, 452
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HincII	GTYRAC	1 cut(s)	765
HindII	GTYRAC	1 cut(s)	765
HinfI	GANTC	3 cut(s)	4, 314, 677
HpaII	CCGG	3 cut(s)	330, 681, 710
HphI	GGTGA	4 cut(s)	214, 367, 406, 691
Hpy166II	GTNNAC	3 cut(s)	38, 442, 765
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	4 cut(s)	196, 265, 307, 581
Hpy8I	GTNNAC	3 cut(s)	38, 442, 765
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	4 cut(s)	269, 469, 492, 496
HpyCH4III	ACNGT	3 cut(s)	226, 325, 515
HpyCH4IV	ACGT	2 cut(s)	192, 692
HpyCH4V	TGCA	2 cut(s)	38, 68
HpyF10VI	GCNNNNNNNGC	3 cut(s)	144, 326, 563
HpyF3I	CTNAG	1 cut(s)	648
HpySE526I	ACGT	2 cut(s)	192, 692
Hsp92I	GRCGYC	2 cut(s)	192, 564
Hsp92II	CATG	4 cut(s)	16, 142, 369, 452
HspAI	GCGC	1 cut(s)	297
Kzo9I	GATC	1 cut(s)	309
LmnI	GCTCC	2 cut(s)	144, 216
Lsp1109I	GCAGC	2 cut(s)	80, 465
LweI	GCATC	2 cut(s)	228, 420
MaeII	ACGT	2 cut(s)	192, 692
MaeIII	GTNAC	4 cut(s)	237, 419, 604, 697
MalI	GATC	1 cut(s)	311
MboI	GATC	1 cut(s)	309
MboII	GAAGA	7 cut(s)	83, 101, 197, 200, 244, 625, 686
MhlI	GDGCHC	1 cut(s)	40
MluCI	AATT	5 cut(s)	154, 302, 520, 527, 747
MlyI	GAGTC	1 cut(s)	323
MnlI	CCTC	7 cut(s)	110, 117, 261, 424, 445, 511, 773
MroXI	GAANNNNTTC	1 cut(s)	576
MseI	TTAA	4 cut(s)	96, 204, 612, 686
MslI	CAYNNNNRTG	1 cut(s)	83
MspA1I	CMGCKG	1 cut(s)	478
MspI	CCGG	3 cut(s)	330, 681, 710
MspR9I	CCNGG	1 cut(s)	597
MvaI	CCWGG	1 cut(s)	597
MvnI	CGCG	1 cut(s)	297
MwoI	GCNNNNNNNGC	3 cut(s)	144, 326, 563
NdeII	GATC	1 cut(s)	309
NlaIII	CATG	4 cut(s)	16, 142, 369, 452
NlaIV	GGNNCC	1 cut(s)	714
NmuCI	GTSAC	4 cut(s)	237, 419, 604, 697
NspI	RCATGY	1 cut(s)	16
PceI	AGGCCT	1 cut(s)	434
PdmI	GAANNNNTTC	1 cut(s)	576
PfeI	GAWTC	2 cut(s)	4, 677
PkrI	GCNGC	2 cut(s)	70, 480
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
Ppu21I	YACGTR	1 cut(s)	693
PsiI	TTATAA	2 cut(s)	494, 510
Psp6I	CCWGG	1 cut(s)	595
PspGI	CCWGG	1 cut(s)	595
PspN4I	GGNNCC	1 cut(s)	714
PvuII	CAGCTG	1 cut(s)	478
RsaI	GTAC	2 cut(s)	17, 63
RsaNI	GTAC	2 cut(s)	16, 62
RseI	CAYNNNNRTG	1 cut(s)	83
SaqAI	TTAA	4 cut(s)	96, 204, 612, 686
SatI	GCNGC	2 cut(s)	69, 479
Sau3AI	GATC	1 cut(s)	309
ScaI	AGTACT	1 cut(s)	63
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	1 cut(s)	597
SduI	GDGCHC	1 cut(s)	40
SfaNI	GCATC	2 cut(s)	228, 420
SmiMI	CAYNNNNRTG	1 cut(s)	83
Sse9I	AATT	5 cut(s)	154, 302, 520, 527, 747
SseBI	AGGCCT	1 cut(s)	434
StuI	AGGCCT	1 cut(s)	434
StyD4I	CCNGG	1 cut(s)	595
TaaI	ACNGT	3 cut(s)	226, 325, 515
TaiI	ACGT	2 cut(s)	195, 695
TaqI	TCGA	4 cut(s)	45, 312, 342, 429
TasI	AATT	5 cut(s)	154, 302, 520, 527, 747
TatI	WGTACW	2 cut(s)	15, 61
TfiI	GAWTC	2 cut(s)	4, 677
Tru1I	TTAA	4 cut(s)	96, 204, 612, 686
Tru9I	TTAA	4 cut(s)	96, 204, 612, 686
TscAI	CASTG	2 cut(s)	126, 748
TseFI	GTSAC	4 cut(s)	237, 419, 604, 697
TseI	GCWGC	2 cut(s)	68, 478
Tsp45I	GTSAC	4 cut(s)	237, 419, 604, 697
TspDTI	ATGAA	2 cut(s)	17, 198
TspGWI	ACGGA	1 cut(s)	705
TspRI	CASTG	2 cut(s)	126, 748
VneI	GTGCAC	1 cut(s)	36
XapI	RAATTY	2 cut(s)	302, 747
XceI	RCATGY	1 cut(s)	16
XcmI	CCANNNNNNNNNTGG	1 cut(s)	598
XmiI	GTMKAC	1 cut(s)	441
XmnI	GAANNNNTTC	1 cut(s)	576
ZraI	GACGTC	1 cut(s)	193
ZrmI	AGTACT	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.