Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0017409

Physical Location & Seq

Genomic Coordinates Forward (+)

37235743 .. 37237259

Gene Structure 1517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029367

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTGGAACTGGGAAAAGGCTGAAATAGAGAAACATCAAGTCTACAACTCACATCTCTATAAGAAGGGTTCAGTGAAGCATATCAATCGCATGGGGAGCTTGTGGAATTATTACCTAACCCATCCCCCTAAAGATGAAGAAGACGTCAGGAACGCTTCCGCTATGGGGTGCGTCGCCAGCGGTGTCTTGTCAATCATGCTACTCTTCTTTATTCTCTGGGAATTTCTGGTGCTCCATAATCCCCAAAACCCAGAATTCCAGATCGAGTCGGCGACCGTGGCCGGACTAAACGTCAATGGCTCTATGTTGAGTGGCACATGGGATTTCACCCTTGTTGCCACAAACCCCAACAAGAAGGCCAGCATCACATGCGACACCATCGAGGCCTCGCTATTCAAGCATTACAGACCCTACTACGCCACGAACCGGCTGCCTTCCTTGTTTATAAACTCCTCCAGTCACAACCATGTCAATTTCAAATTGGGTTTAGTCAGCCACTATATCGACGCTGATGACGCCATTGAAATCTTTGAAGAAAAGACCGCTCGAGGTTTGGTCACTTTTAAGCTCAGGCTGGTGGTAGACTTTACTTATAGGACTAAGTTTTGGGATGTCTGGAATGTAAAAGATTCTGGCTTAATTCTGGACATCACTTGTGAGCCTGTTCAATTTGTTTTTTCCCCAAATAATGACACTGGAATCTTTAGAGGTCAGTCAACTACATGCCACCAGGGAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

247

Amino Acids

28.15

Weight (kDa)

6.35

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017409)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0336471
rosa_laevigata	RLG00000029361 RLG00000029362 RLG00000029364 RLG00000029367
rosa_multiflora	Rmu_sc0001981.1_g000028 Rmu_sc0001981.1_g000047
rosa_roxburghii	Rroxscaffold_4G00315390 Rroxscaffold_4G00315550 Rroxscaffold_4G00315560 Rroxscaffold_4G00315620
rosa_rugosa	Rorug04G0097400
rosa_samantha	Rh1BG114700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	446
AatII	GACGTC	1 cut(s)	147
AccBSI	CCGCTC	1 cut(s)	545
AccI	GTMKAC	2 cut(s)	42, 582
AciI	CCGC	3 cut(s)	159, 180, 543
AcoI	YGGCCR	1 cut(s)	279
AcsI	RAATTY	3 cut(s)	221, 254, 735
AcyI	GRCGYC	2 cut(s)	144, 516
AfiI	CCNNNNNNNGG	2 cut(s)	165, 426
AgsI	TTSAA	5 cut(s)	397, 478, 524, 533, 668
AhdI	GACNNNNNGTC	1 cut(s)	290
AjnI	CCWGG	1 cut(s)	729
AluBI	AGCT	2 cut(s)	99, 568
AluI	AGCT	2 cut(s)	99, 568
Alw21I	GWGCWC	1 cut(s)	234
Ama87I	CYCGRG	1 cut(s)	546
AoxI	GGCC	3 cut(s)	279, 357, 384
ApeKI	GCWGC	1 cut(s)	430
ApoI	RAATTY	3 cut(s)	221, 254, 735
AsuHPI	GGTGA	1 cut(s)	319
AvaI	CYCGRG	1 cut(s)	546
BbsI	GAAGAC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	417
BccI	CCATC	2 cut(s)	129, 386
BcgI	CGANNNNNNTGC	4 cut(s)	68, 102, 412, 446
BciT130I	CCWGG	1 cut(s)	731
BisI	GCNGC	1 cut(s)	431
BlsI	GCNGC	1 cut(s)	432
Bme1390I	CCNGG	1 cut(s)	731
BmeRI	GACNNNNNGTC	1 cut(s)	290
BmeT110I	CYCGRG	1 cut(s)	546
BmrFI	CCNGG	1 cut(s)	731
BmrI	ACTGGG	1 cut(s)	19
BmsI	GCATC	1 cut(s)	372
BmuI	ACTGGG	1 cut(s)	19
BpiI	GAAGAC	1 cut(s)	147
BpmI	CTGGAG	1 cut(s)	439
Bpu10I	CCTNAGC	1 cut(s)	569
BsaHI	GRCGYC	2 cut(s)	144, 516
BsaJI	CCNNGG	2 cut(s)	276, 730
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 426
Bse118I	RCCGGY	1 cut(s)	426
Bse1I	ACTGG	3 cut(s)	14, 456, 700
BseBI	CCWGG	1 cut(s)	731
BseDI	CCNNGG	2 cut(s)	276, 730
BseGI	GGATG	2 cut(s)	121, 616
BseLI	CCNNNNNNNGG	2 cut(s)	165, 426
BseMII	CTCAG	1 cut(s)	583
BseNI	ACTGG	3 cut(s)	14, 456, 700
BseRI	GAGGAG	1 cut(s)	442
BseXI	GCAGC	1 cut(s)	417
Bsh1285I	CGRYCG	1 cut(s)	276
BshFI	GGCC	3 cut(s)	281, 359, 386
BsiEI	CGRYCG	1 cut(s)	276
BsiHKAI	GWGCWC	1 cut(s)	234
BsiHKCI	CYCGRG	1 cut(s)	546
BsiSI	CCGG	2 cut(s)	282, 427
BslI	CCNNNNNNNGG	2 cut(s)	165, 426
BsnI	GGCC	3 cut(s)	281, 359, 386
BsoBI	CYCGRG	1 cut(s)	546
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	1 cut(s)	261
BspACI	CCGC	3 cut(s)	159, 180, 543
BspANI	GGCC	3 cut(s)	281, 359, 386
BspCNI	CTCAG	1 cut(s)	582
BsrBI	CCGCTC	1 cut(s)	545
BsrFI	RCCGGY	1 cut(s)	426
BsrI	ACTGG	3 cut(s)	14, 456, 700
BssAI	RCCGGY	1 cut(s)	426
BssECI	CCNNGG	2 cut(s)	276, 730
BssMI	GATC	1 cut(s)	261
BssNI	GRCGYC	2 cut(s)	144, 516
Bst2UI	CCWGG	1 cut(s)	731
Bst4CI	ACNGT	1 cut(s)	277
Bst6I	CTCTTC	1 cut(s)	209
BstACI	GRCGYC	2 cut(s)	144, 516
BstAPI	GCANNNNNTGC	1 cut(s)	369
BstC8I	GCNNGC	2 cut(s)	178, 361
BstDEI	CTNAG	2 cut(s)	569, 600
BstDSI	CCRYGG	1 cut(s)	276
BstF5I	GGATG	2 cut(s)	121, 616
BstKTI	GATC	1 cut(s)	264
BstMBI	GATC	1 cut(s)	261
BstMCI	CGRYCG	1 cut(s)	276
BstMWI	GCNNNNNNNGC	6 cut(s)	96, 177, 278, 369, 397, 515
BstNI	CCWGG	1 cut(s)	731
BstNSI	RCATGY	2 cut(s)	372, 726
BstSCI	CCNGG	1 cut(s)	729
BstV1I	GCAGC	1 cut(s)	417
BstV2I	GAAGAC	1 cut(s)	147
BsuRI	GGCC	3 cut(s)	281, 359, 386
BtgI	CCRYGG	1 cut(s)	276
BtsCI	GGATG	2 cut(s)	121, 616
BtsIMutI	CAGTG	2 cut(s)	78, 693
Cac8I	GCNNGC	2 cut(s)	178, 361
Cfr10I	RCCGGY	1 cut(s)	426
CseI	GACGC	3 cut(s)	160, 515, 524
CviAII	CATG	6 cut(s)	91, 196, 318, 369, 467, 723
DdeI	CTNAG	2 cut(s)	569, 600
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
DriI	GACNNNNNGTC	1 cut(s)	290
EaeI	YGGCCR	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	209
Eam1105I	GACNNNNNGTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	209
Eco147I	AGGCCT	1 cut(s)	386
Eco88I	CYCGRG	1 cut(s)	546
EcoRI	GAATTC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	729
FaeI	CATG	6 cut(s)	94, 199, 321, 372, 470, 726
FatI	CATG	6 cut(s)	90, 195, 317, 368, 466, 722
FblI	GTMKAC	2 cut(s)	42, 582
Fnu4HI	GCNGC	1 cut(s)	431
FokI	GGATG	2 cut(s)	108, 623
Fsp4HI	GCNGC	1 cut(s)	431
GluI	GCNGC	1 cut(s)	431
GsuI	CTGGAG	1 cut(s)	439
HaeIII	GGCC	3 cut(s)	281, 359, 386
HapII	CCGG	2 cut(s)	282, 427
HgaI	GACGC	3 cut(s)	160, 515, 524
Hin1I	GRCGYC	2 cut(s)	144, 516
Hin1II	CATG	6 cut(s)	94, 199, 321, 372, 470, 726
HincII	GTYRAC	1 cut(s)	717
HindII	GTYRAC	1 cut(s)	717
HinfI	GANTC	3 cut(s)	266, 629, 699
HpaII	CCGG	2 cut(s)	282, 427
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	3 cut(s)	43, 583, 717
Hpy188III	TCNNGA	4 cut(s)	148, 259, 616, 644
Hpy8I	GTNNAC	3 cut(s)	43, 583, 717
Hpy99I	CGWCG	2 cut(s)	176, 509
HpyAV	CCTTC	3 cut(s)	58, 349, 444
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4IV	ACGT	2 cut(s)	144, 291
HpyF10VI	GCNNNNNNNGC	6 cut(s)	96, 177, 278, 369, 397, 515
HpyF3I	CTNAG	2 cut(s)	569, 600
HpySE526I	ACGT	2 cut(s)	144, 291
Hsp92I	GRCGYC	2 cut(s)	144, 516
Hsp92II	CATG	6 cut(s)	94, 199, 321, 372, 470, 726
Kzo9I	GATC	1 cut(s)	261
LmnI	GCTCC	2 cut(s)	96, 237
Lsp1109I	GCAGC	1 cut(s)	417
LweI	GCATC	1 cut(s)	372
MaeII	ACGT	2 cut(s)	144, 291
MaeIII	GTNAC	2 cut(s)	458, 556
MalI	GATC	1 cut(s)	263
MbiI	CCGCTC	1 cut(s)	545
MboI	GATC	1 cut(s)	261
MboII	GAAGA	4 cut(s)	149, 152, 196, 545
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	8 cut(s)	106, 221, 254, 472, 479, 639, 668, 735
MlyI	GAGTC	1 cut(s)	275
MnlI	CCTC	5 cut(s)	376, 397, 463, 542, 701
MseI	TTAA	2 cut(s)	564, 638
MslI	CAYNNNNRTG	1 cut(s)	465
MspA1I	CMGCKG	1 cut(s)	180
MspI	CCGG	2 cut(s)	282, 427
MspR9I	CCNGG	1 cut(s)	731
MvaI	CCWGG	1 cut(s)	731
MwoI	GCNNNNNNNGC	6 cut(s)	96, 177, 278, 369, 397, 515
NdeII	GATC	1 cut(s)	261
NlaIII	CATG	6 cut(s)	94, 199, 321, 372, 470, 726
NmuCI	GTSAC	2 cut(s)	458, 556
NspI	RCATGY	2 cut(s)	372, 726
PaeR7I	CTCGAG	1 cut(s)	546
PceI	AGGCCT	1 cut(s)	386
PfeI	GAWTC	2 cut(s)	629, 699
PkrI	GCNGC	1 cut(s)	432
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
PsiI	TTATAA	1 cut(s)	446
Psp6I	CCWGG	1 cut(s)	729
PspGI	CCWGG	1 cut(s)	729
PspXI	VCTCGAGB	1 cut(s)	546
RseI	CAYNNNNRTG	1 cut(s)	465
SaqAI	TTAA	2 cut(s)	564, 638
SatI	GCNGC	1 cut(s)	431
Sau3AI	GATC	1 cut(s)	261
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	731
SduI	GDGCHC	1 cut(s)	234
SetI	ASST	7 cut(s)	101, 117, 147, 294, 553, 570, 712
SfaNI	GCATC	1 cut(s)	372
Sfr274I	CTCGAG	1 cut(s)	546
SlaI	CTCGAG	1 cut(s)	546
SmiMI	CAYNNNNRTG	1 cut(s)	465
SmlI	CTYRAG	1 cut(s)	546
SmoI	CTYRAG	1 cut(s)	546
Sse9I	AATT	8 cut(s)	106, 221, 254, 472, 479, 639, 668, 735
SseBI	AGGCCT	1 cut(s)	386
SsiI	CCGC	3 cut(s)	159, 180, 543
StuI	AGGCCT	1 cut(s)	386
StyD4I	CCNGG	1 cut(s)	729
TaaI	ACNGT	1 cut(s)	277
TaiI	ACGT	2 cut(s)	147, 294
TaqI	TCGA	4 cut(s)	264, 381, 504, 547
TasI	AATT	8 cut(s)	106, 221, 254, 472, 479, 639, 668, 735
TfiI	GAWTC	2 cut(s)	629, 699
Tru1I	TTAA	2 cut(s)	564, 638
Tru9I	TTAA	2 cut(s)	564, 638
TscAI	CASTG	2 cut(s)	78, 700
TseFI	GTSAC	2 cut(s)	458, 556
TseI	GCWGC	1 cut(s)	430
Tsp45I	GTSAC	2 cut(s)	458, 556
TspDTI	ATGAA	1 cut(s)	150
TspRI	CASTG	2 cut(s)	78, 700
XapI	RAATTY	3 cut(s)	221, 254, 735
XceI	RCATGY	2 cut(s)	372, 726
XhoI	CTCGAG	1 cut(s)	546
XmiI	GTMKAC	2 cut(s)	42, 582
ZraI	GACGTC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.