Rroxscaffold_4G00315390

Has 584 Blast hits to 584 proteins in 25 species Archae - 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0017409
Physical Location & Seq
Forward (+)
39675238 .. 39678566
3329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00315390.1

Sequence Viewer

Length: 615 bp
ATGGGACACTCGGCTAGTTCTGGGCTTTCCGGTCAGGGGCTATATATCTGTTTGATCGGTATTTTGTCAGCCTGGGTATTCATACTATTGCTCTGGAAGAGTCTGCTCCATAATCCTTTAGATCCCAAATTTCATATCGACTCAGCTACCCTAGTGGGGCTGAAAATCACTGCCTCCTCCGAGTTAAGTGGTACATGGGATGTCAATCTTCTTGTCACAAACCCCAACCAGAAGGTCAGCCTCAATTGTGACAGTATCAAGGTCTTCCTATACAAGGATTATCAACCTTACCTCGCAATGAACCAGGTGCCTTCTTTCTTTGTAGACAAGATGAACCACACCCCAGTCAATTTTAAACTTGGATTAGTGAGCCGCTACATTGGCCATCACGTGGCCAACAAAATCTCTCAAGAAATCAGCACTCGCCGGTCGGTGATATTTGGGCTCATGATGGAGCTACAGTTCACTCATAGGACTAAAGTGCTAGACAGGTGGGATACACAGTTTTCAGGTTATGCAAAGGAGAATGTGTGGAAGTATACTATGAATCTCAACTTTCAAGATGTTGATTTTACAGATGGCAATAGTTTCGCAGCTTCAAAGCACAAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

204

Amino Acids

23.14

Weight (kDa)

9.02

Isoelectric Point (pI)

28.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 307
AccB7I CCANNNNNTGG 1 cut(s) 391
AccI GTMKAC 2 cut(s) 324, 539
AciI CCGC 1 cut(s) 373
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 2 cut(s) 382, 393
AcsI RAATTY 1 cut(s) 128
AcvI CACGTG 1 cut(s) 391
AfaI GTAC 1 cut(s) 193
AfiI CCNNNNNNNGG 4 cut(s) 36, 156, 274, 391
AgsI TTSAA 2 cut(s) 560, 600
AjnI CCWGG 2 cut(s) 71, 303
AloI GAACNNNNNNTCC 2 cut(s) 446, 478
AluBI AGCT 3 cut(s) 146, 457, 596
AluI AGCT 3 cut(s) 146, 457, 596
AlwI GGATC 1 cut(s) 116
AoxI GGCC 2 cut(s) 382, 393
ApeKI GCWGC 1 cut(s) 593
ApoI RAATTY 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 445
BalI TGGCCA 2 cut(s) 384, 395
BanI GGYRCC 1 cut(s) 307
BanII GRGCYC 1 cut(s) 447
BbrPI CACGTG 1 cut(s) 391
BbsI GAAGAC 1 cut(s) 256
BbvI GCAGC 1 cut(s) 605
BccI CCATC 3 cut(s) 393, 445, 572
BcgI CGANNNNNNTGC 2 cut(s) 571, 605
BciT130I CCWGG 2 cut(s) 73, 305
BciVI GTATCC 1 cut(s) 490
BfaI CTAG 3 cut(s) 15, 152, 485
BfmI CTRYAG 1 cut(s) 458
BfuI GTATCC 1 cut(s) 490
BisI GCNGC 2 cut(s) 373, 594
BlsI GCNGC 2 cut(s) 374, 595
Bme1390I CCNGG 2 cut(s) 73, 305
BmiI GGNNCC 1 cut(s) 309
BmrFI CCNGG 2 cut(s) 73, 305
BmrI ACTGGG 1 cut(s) 338
BmuI ACTGGG 1 cut(s) 338
BpiI GAAGAC 1 cut(s) 256
BpuEI CTTGAG 1 cut(s) 393
BsaAI YACGTR 1 cut(s) 391
BsaBI GATNNNNATC 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 29
BsaXI ACNNNNNCTCC 4 cut(s) 446, 476, 515, 545
Bsc4I CCNNNNNNNGG 4 cut(s) 36, 156, 274, 391
Bse118I RCCGGY 1 cut(s) 426
Bse1I ACTGG 1 cut(s) 344
Bse3DI GCAATG 1 cut(s) 303
Bse8I GATNNNNATC 1 cut(s) 204
BseBI CCWGG 2 cut(s) 73, 305
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 205
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 4 cut(s) 36, 156, 274, 391
BseMI GCAATG 1 cut(s) 303
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 344
BseRI GAGGAG 1 cut(s) 166
BseXI GCAGC 1 cut(s) 605
Bsh1285I CGRYCG 1 cut(s) 431
BshFI GGCC 2 cut(s) 384, 395
BshNI GGYRCC 1 cut(s) 307
BsiEI CGRYCG 1 cut(s) 431
BsiSI CCGG 2 cut(s) 30, 427
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 4 cut(s) 36, 156, 274, 391
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 2 cut(s) 384, 395
Bsp1286I GDGCHC 1 cut(s) 447
Bsp143I GATC 2 cut(s) 54, 121
BspACI CCGC 1 cut(s) 373
BspANI GGCC 2 cut(s) 384, 395
BspCNI CTCAG 1 cut(s) 155
BspHI TCATGA 1 cut(s) 447
BspLI GGNNCC 1 cut(s) 309
BspPI GGATC 1 cut(s) 116
BspT107I GGYRCC 1 cut(s) 307
BsrDI GCAATG 1 cut(s) 303
BsrFI RCCGGY 1 cut(s) 426
BsrI ACTGG 1 cut(s) 344
BssAI RCCGGY 1 cut(s) 426
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 2 cut(s) 54, 121
BssNAI GTATAC 1 cut(s) 540
Bst1107I GTATAC 1 cut(s) 540
Bst2UI CCWGG 2 cut(s) 73, 305
Bst4CI ACNGT 3 cut(s) 254, 462, 504
Bst6I CTCTTC 1 cut(s) 92
BstBAI YACGTR 1 cut(s) 391
BstDEI CTNAG 1 cut(s) 142
BstENI CCTNNNNNAGG 1 cut(s) 272
BstF5I GGATG 1 cut(s) 205
BstKTI GATC 2 cut(s) 57, 124
BstMBI GATC 2 cut(s) 54, 121
BstMCI CGRYCG 1 cut(s) 431
BstMWI GCNNNNNNNGC 1 cut(s) 381
BstNI CCWGG 2 cut(s) 73, 305
BstSCI CCNGG 2 cut(s) 71, 303
BstSFI CTRYAG 1 cut(s) 458
BstV1I GCAGC 1 cut(s) 605
BstV2I GAAGAC 1 cut(s) 256
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BstZ17I GTATAC 1 cut(s) 540
BsuI GTATCC 1 cut(s) 490
BsuRI GGCC 2 cut(s) 384, 395
BtsCI GGATG 1 cut(s) 205
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 168
CciI TCATGA 1 cut(s) 447
Cfr10I RCCGGY 1 cut(s) 426
CsiI ACCWGGT 1 cut(s) 303
Csp6I GTAC 1 cut(s) 192
CviAII CATG 2 cut(s) 195, 448
CviQI GTAC 1 cut(s) 192
DdeI CTNAG 1 cut(s) 142
DpnI GATC 2 cut(s) 56, 123
DpnII GATC 2 cut(s) 54, 121
DraI TTTAAA 1 cut(s) 355
EaeI YGGCCR 2 cut(s) 382, 393
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Eco24I GRGCYC 1 cut(s) 447
Eco72I CACGTG 1 cut(s) 391
EcoNI CCTNNNNNAGG 1 cut(s) 272
EcoRII CCWGG 2 cut(s) 71, 303
EcoT38I GRGCYC 1 cut(s) 447
FaeI CATG 2 cut(s) 198, 451
FaqI GGGAC 1 cut(s) 18
FatI CATG 2 cut(s) 194, 447
FblI GTMKAC 2 cut(s) 324, 539
Fnu4HI GCNGC 2 cut(s) 373, 594
FokI GGATG 1 cut(s) 212
FriOI GRGCYC 1 cut(s) 447
Fsp4HI GCNGC 2 cut(s) 373, 594
FspBI CTAG 3 cut(s) 15, 152, 485
GluI GCNGC 2 cut(s) 373, 594
HaeIII GGCC 2 cut(s) 384, 395
HapII CCGG 2 cut(s) 30, 427
Hin1II CATG 2 cut(s) 198, 451
HinfI GANTC 3 cut(s) 100, 140, 547
HpaII CCGG 2 cut(s) 30, 427
HphI GGTGA 1 cut(s) 445
Hpy166II GTNNAC 3 cut(s) 325, 465, 540
Hpy188I TCNGA 1 cut(s) 181
Hpy188III TCNNGA 4 cut(s) 94, 410, 448, 560
Hpy8I GTNNAC 3 cut(s) 325, 465, 540
HpyAV CCTTC 2 cut(s) 226, 321
HpyCH4III ACNGT 3 cut(s) 254, 462, 504
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 1 cut(s) 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 381
HpyF3I CTNAG 1 cut(s) 142
HpySE526I ACGT 1 cut(s) 390
Hsp92II CATG 2 cut(s) 198, 451
Kzo9I GATC 2 cut(s) 54, 121
LmnI GCTCC 2 cut(s) 111, 454
Lsp1109I GCAGC 1 cut(s) 605
MabI ACCWGGT 1 cut(s) 303
MaeI CTAG 3 cut(s) 15, 152, 485
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 2 cut(s) 214, 248
MalI GATC 2 cut(s) 56, 123
MboI GATC 2 cut(s) 54, 121
MboII GAAGA 3 cut(s) 109, 200, 256
MfeI CAATTG 1 cut(s) 244
MflI RGATCY 1 cut(s) 121
MhlI GDGCHC 1 cut(s) 447
MlsI TGGCCA 2 cut(s) 384, 395
MluCI AATT 3 cut(s) 128, 244, 349
MluNI TGGCCA 2 cut(s) 384, 395
MlyI GAGTC 2 cut(s) 109, 134
MnlI CCTC 4 cut(s) 184, 187, 251, 302
Mox20I TGGCCA 2 cut(s) 384, 395
MscI TGGCCA 2 cut(s) 384, 395
MseI TTAA 2 cut(s) 185, 354
Msp20I TGGCCA 2 cut(s) 384, 395
MspI CCGG 2 cut(s) 30, 427
MspR9I CCNGG 2 cut(s) 73, 305
MunI CAATTG 1 cut(s) 244
MvaI CCWGG 2 cut(s) 73, 305
MwoI GCNNNNNNNGC 1 cut(s) 381
NdeII GATC 2 cut(s) 54, 121
NlaIII CATG 2 cut(s) 198, 451
NlaIV GGNNCC 1 cut(s) 309
NmuCI GTSAC 2 cut(s) 214, 248
PagI TCATGA 1 cut(s) 447
PfeI GAWTC 1 cut(s) 547
PflMI CCANNNNNTGG 1 cut(s) 391
PkrI GCNGC 2 cut(s) 374, 595
PleI GAGTC 2 cut(s) 108, 134
PmaCI CACGTG 1 cut(s) 391
PmlI CACGTG 1 cut(s) 391
PpsI GAGTC 2 cut(s) 108, 134
Ppu21I YACGTR 1 cut(s) 391
Psp6I CCWGG 2 cut(s) 71, 303
PspCI CACGTG 1 cut(s) 391
PspGI CCWGG 2 cut(s) 71, 303
PspN4I GGNNCC 1 cut(s) 309
PsuI RGATCY 1 cut(s) 121
RsaI GTAC 1 cut(s) 193
RsaNI GTAC 1 cut(s) 192
SaqAI TTAA 2 cut(s) 185, 354
SatI GCNGC 2 cut(s) 373, 594
Sau3AI GATC 2 cut(s) 54, 121
SchI GAGTC 2 cut(s) 109, 134
ScrFI CCNGG 2 cut(s) 73, 305
SduI GDGCHC 1 cut(s) 447
SexAI ACCWGGT 1 cut(s) 303
SfcI CTRYAG 1 cut(s) 458
SmlI CTYRAG 1 cut(s) 408
SmoI CTYRAG 1 cut(s) 408
Sse9I AATT 3 cut(s) 128, 244, 349
SsiI CCGC 1 cut(s) 373
SspMI CTAG 3 cut(s) 15, 152, 485
StyD4I CCNGG 2 cut(s) 71, 303
TaaI ACNGT 3 cut(s) 254, 462, 504
TaiI ACGT 1 cut(s) 393
TaqI TCGA 1 cut(s) 138
TasI AATT 3 cut(s) 128, 244, 349
TauI GCSGC 1 cut(s) 375
TfiI GAWTC 1 cut(s) 547
Tru1I TTAA 2 cut(s) 185, 354
Tru9I TTAA 2 cut(s) 185, 354
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 2 cut(s) 214, 248
TseI GCWGC 1 cut(s) 593
Tsp45I GTSAC 2 cut(s) 214, 248
TspDTI ATGAA 5 cut(s) 70, 122, 314, 347, 560
TspRI CASTG 1 cut(s) 175
Van91I CCANNNNNTGG 1 cut(s) 391
XagI CCTNNNNNAGG 1 cut(s) 272
XapI RAATTY 1 cut(s) 128
XmiI GTMKAC 2 cut(s) 324, 539
XspI CTAG 3 cut(s) 15, 152, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.