RchiOBHm_Chr1g0337511

26S proteasome non-atpase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0016431
Physical Location & Seq
Forward (+)
29313143 .. 29314882
1740 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 582 bp
ATGAACCTGGCTGCTGGCATTCAGGTGGCTCAATTGGCCCTCAAACATCGCCAGAATAAGAAGCAGCAACAAAGGATTATAGTCTTTGCTGGAAGTGTAGCCCTTGATATCATTAATTTTGGTGAAGAAGATGAAGAAAAGTTAGAGAAGCTAGAAGCACTTCTTGCTGCTGTGAACAATAATGACACCAGCCACATTGTTCATGTTTCGGCTGGTCCAAGTGCTCTTTCTGATGTACTCATAAGTACACCTATCTTCACTGGAGATGGAGAAGGTGGGAGTGGGATTAAGATTAAGTCCATTGTTGAAGCTTCAAAGCCGTGGCCATCGGTGAGCATGTCCAGGTGGTTACTCACGATGAATCATGCCTTACCATTTGCCTCTCTTCAAATGTCTGTGCAGGAAGGTGAAAAAGATTCTGCTAGTAATAAAGATATGAGTAAATTATTGGCTGATCAGTCTTTTGTGTCTTCTATCCTTGCCTCGCTTCCAGGGGTTGACCCAAATGATCCTTCAGTAAGAGACTTGCTTGCTTCTATGCAAAACCAGTCAGAGGTGAGTATTAAACTTAGCAGGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000502 GO:0001101 GO:0001653 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010015 GO:0010029 GO:0010033 GO:0010053 GO:0010054 GO:0010150 GO:0010498 GO:0016020 GO:0016043 GO:0016049 GO:0019538 GO:0019941 GO:0021700 GO:0022414 GO:0022607 GO:0022622 GO:0023052 GO:0030154 GO:0030163 GO:0031593 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0033993 GO:0034285 GO:0034622 GO:0035966 GO:0038023 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048364 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048468 GO:0048469 GO:0048528 GO:0048580 GO:0048588 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051788 GO:0060089 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080147 GO:0090558 GO:0090567 GO:0090627 GO:0090693 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0099402 GO:0140030 GO:1900140 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369 GO:1905392 GO:1905393 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
UIM VWA_2

Protein Analysis

193

Amino Acids

20.7

Weight (kDa)

5.35

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 503
AcoI YGGCCR 1 cut(s) 323
AcuI CTGAAG 1 cut(s) 498
AfaI GTAC 2 cut(s) 237, 247
AfiI CCNNNNNNNGG 1 cut(s) 553
AgsI TTSAA 3 cut(s) 308, 315, 389
AjnI CCWGG 3 cut(s) 6, 341, 490
AjuI GAANNNNNNNTTGG 4 cut(s) 211, 243, 496, 528
AluBI AGCT 2 cut(s) 151, 311
AluI AGCT 2 cut(s) 151, 311
Alw21I GWGCWC 1 cut(s) 226
Alw26I GTCTC 1 cut(s) 516
AlwI GGATC 1 cut(s) 503
AoxI GGCC 2 cut(s) 36, 323
ApeKI GCWGC 3 cut(s) 11, 64, 167
AseI ATTAAT 1 cut(s) 114
Asp700I GAANNNNTTC 1 cut(s) 159
AspS9I GGNCC 2 cut(s) 37, 215
AsuHPI GGTGA 4 cut(s) 134, 343, 419, 568
AvaII GGWCC 1 cut(s) 215
BalI TGGCCA 1 cut(s) 325
BbsI GAAGAC 1 cut(s) 462
Bbv12I GWGCWC 1 cut(s) 226
BbvI GCAGC 2 cut(s) 76, 154
BccI CCATC 2 cut(s) 260, 334
BceAI ACGGC 1 cut(s) 304
BciT130I CCWGG 3 cut(s) 8, 343, 492
BclI TGATCA 1 cut(s) 454
BcoDI GTCTC 1 cut(s) 516
BfaI CTAG 2 cut(s) 152, 423
BisI GCNGC 3 cut(s) 12, 65, 168
BlsI GCNGC 3 cut(s) 13, 66, 169
Bme1390I CCNGG 3 cut(s) 8, 343, 492
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 2 cut(s) 37, 215
BmrFI CCNGG 3 cut(s) 8, 343, 492
BpiI GAAGAC 1 cut(s) 462
BpmI CTGGAG 1 cut(s) 282
BsaJI CCNNGG 2 cut(s) 320, 491
Bsc4I CCNNNNNNNGG 1 cut(s) 553
Bse1I ACTGG 2 cut(s) 265, 547
BseBI CCWGG 3 cut(s) 8, 343, 492
BseDI CCNNGG 2 cut(s) 320, 491
BseLI CCNNNNNNNGG 1 cut(s) 553
BseNI ACTGG 2 cut(s) 265, 547
BseXI GCAGC 2 cut(s) 76, 154
BsgI GTGCAG 1 cut(s) 419
BshFI GGCC 2 cut(s) 38, 325
BsiHKAI GWGCWC 1 cut(s) 226
BslI CCNNNNNNNGG 1 cut(s) 553
BsmAI GTCTC 1 cut(s) 516
BsmI GAATGC 1 cut(s) 18
BsnI GGCC 2 cut(s) 38, 325
Bsp1286I GDGCHC 1 cut(s) 226
Bsp143I GATC 2 cut(s) 454, 508
BspANI GGCC 2 cut(s) 38, 325
BspPI GGATC 1 cut(s) 503
BsrI ACTGG 2 cut(s) 265, 547
BssECI CCNNGG 2 cut(s) 320, 491
BssMI GATC 2 cut(s) 454, 508
Bst2UI CCWGG 3 cut(s) 8, 343, 492
Bst6I CTCTTC 1 cut(s) 390
BstAPI GCANNNNNTGC 1 cut(s) 164
BstC8I GCNNGC 2 cut(s) 16, 531
BstDEI CTNAG 1 cut(s) 569
BstDSI CCRYGG 1 cut(s) 320
BstKTI GATC 2 cut(s) 457, 511
BstMAI GTCTC 1 cut(s) 516
BstMBI GATC 2 cut(s) 454, 508
BstMWI GCNNNNNNNGC 2 cut(s) 35, 164
BstNI CCWGG 3 cut(s) 8, 343, 492
BstNSI RCATGY 1 cut(s) 340
BstSCI CCNGG 3 cut(s) 6, 341, 490
BstV1I GCAGC 2 cut(s) 76, 154
BstV2I GAAGAC 1 cut(s) 462
BsuRI GGCC 2 cut(s) 38, 325
BtgI CCRYGG 1 cut(s) 320
BtgZI GCGATG 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 258
Cac8I GCNNGC 2 cut(s) 16, 531
Cfr13I GGNCC 2 cut(s) 37, 215
Csp6I GTAC 2 cut(s) 236, 246
CviAII CATG 3 cut(s) 203, 337, 365
CviQI GTAC 2 cut(s) 236, 246
DdeI CTNAG 1 cut(s) 569
DpnI GATC 2 cut(s) 456, 510
DpnII GATC 2 cut(s) 454, 508
EaeI YGGCCR 1 cut(s) 323
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Eco32I GATATC 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 498
EcoRII CCWGG 3 cut(s) 6, 341, 490
EcoRV GATATC 1 cut(s) 109
FaeI CATG 3 cut(s) 206, 340, 368
FaiI YATR 7 cut(s) 80, 204, 242, 338, 366, 437, 539
FalI AAGNNNNNCTT 2 cut(s) 147, 179
FatI CATG 3 cut(s) 202, 336, 364
FbaI TGATCA 1 cut(s) 454
Fnu4HI GCNGC 3 cut(s) 12, 65, 168
Fsp4HI GCNGC 3 cut(s) 12, 65, 168
FspBI CTAG 2 cut(s) 152, 423
GluI GCNGC 3 cut(s) 12, 65, 168
GsuI CTGGAG 1 cut(s) 282
HaeIII GGCC 2 cut(s) 38, 325
Hin1II CATG 3 cut(s) 206, 340, 368
HincII GTYRAC 1 cut(s) 499
HindII GTYRAC 1 cut(s) 499
HindIII AAGCTT 1 cut(s) 309
HinfI GANTC 2 cut(s) 361, 416
HphI GGTGA 4 cut(s) 134, 343, 419, 568
Hpy166II GTNNAC 3 cut(s) 175, 248, 499
Hpy188I TCNGA 2 cut(s) 232, 553
Hpy188III TCNNGA 1 cut(s) 355
Hpy8I GTNNAC 3 cut(s) 175, 248, 499
HpyAV CCTTC 3 cut(s) 266, 398, 522
HpyCH4V TGCA 2 cut(s) 400, 541
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 164
HpyF3I CTNAG 1 cut(s) 569
Hsp92II CATG 3 cut(s) 206, 340, 368
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 2 cut(s) 454, 508
Lsp1109I GCAGC 2 cut(s) 76, 154
MaeI CTAG 2 cut(s) 152, 423
MaeIII GTNAC 1 cut(s) 348
MalI GATC 2 cut(s) 456, 510
MboI GATC 2 cut(s) 454, 508
MboII GAAGA 6 cut(s) 137, 140, 146, 247, 377, 462
MfeI CAATTG 1 cut(s) 32
MhlI GDGCHC 1 cut(s) 226
MlsI TGGCCA 1 cut(s) 325
MluCI AATT 3 cut(s) 32, 115, 443
MluNI TGGCCA 1 cut(s) 325
MnlI CCTC 4 cut(s) 50, 391, 493, 547
Mox20I TGGCCA 1 cut(s) 325
MroXI GAANNNNTTC 1 cut(s) 159
MscI TGGCCA 1 cut(s) 325
MseI TTAA 5 cut(s) 114, 288, 294, 564, 580
MslI CAYNNNNRTG 1 cut(s) 23
Msp20I TGGCCA 1 cut(s) 325
MspR9I CCNGG 3 cut(s) 8, 343, 492
MunI CAATTG 1 cut(s) 32
Mva1269I GAATGC 1 cut(s) 18
MvaI CCWGG 3 cut(s) 8, 343, 492
MwoI GCNNNNNNNGC 2 cut(s) 35, 164
NdeII GATC 2 cut(s) 454, 508
NlaIII CATG 3 cut(s) 206, 340, 368
NspI RCATGY 1 cut(s) 340
PctI GAATGC 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 159
PfeI GAWTC 2 cut(s) 361, 416
PkrI GCNGC 3 cut(s) 13, 66, 169
PshBI ATTAAT 1 cut(s) 114
Psp6I CCWGG 3 cut(s) 6, 341, 490
PspGI CCWGG 3 cut(s) 6, 341, 490
PspPI GGNCC 2 cut(s) 37, 215
RsaI GTAC 2 cut(s) 237, 247
RsaNI GTAC 2 cut(s) 236, 246
RseI CAYNNNNRTG 1 cut(s) 23
SaqAI TTAA 5 cut(s) 114, 288, 294, 564, 580
SatI GCNGC 3 cut(s) 12, 65, 168
Sau3AI GATC 2 cut(s) 454, 508
Sau96I GGNCC 2 cut(s) 37, 215
ScrFI CCNGG 3 cut(s) 8, 343, 492
SduI GDGCHC 1 cut(s) 226
SetI ASST 9 cut(s) 9, 27, 153, 253, 277, 313, 347, 409, 558
SinI GGWCC 1 cut(s) 215
SmiMI CAYNNNNRTG 1 cut(s) 23
Sse9I AATT 3 cut(s) 32, 115, 443
SspMI CTAG 2 cut(s) 152, 423
StyD4I CCNGG 3 cut(s) 6, 341, 490
TasI AATT 3 cut(s) 32, 115, 443
TatI WGTACW 2 cut(s) 235, 245
TfiI GAWTC 2 cut(s) 361, 416
Tru1I TTAA 5 cut(s) 114, 288, 294, 564, 580
Tru9I TTAA 5 cut(s) 114, 288, 294, 564, 580
TscAI CASTG 1 cut(s) 265
TseI GCWGC 3 cut(s) 11, 64, 167
TspDTI ATGAA 4 cut(s) 17, 147, 191, 374
TspRI CASTG 1 cut(s) 265
VpaK11BI GGWCC 1 cut(s) 215
VspI ATTAAT 1 cut(s) 114
XceI RCATGY 1 cut(s) 340
XmnI GAANNNNTTC 1 cut(s) 159
XspI CTAG 2 cut(s) 152, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.