Rh2DG589000

26S proteasome non-atpase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0016431
Physical Location & Seq
Forward (+)
82197578 .. 82217145
19568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG589000.1

Sequence Viewer

Length: 789 bp
ATGTCTCCCTTTGAACATGGCGAGTTTTTTGTTTTTGATGATGGTGGAGAGGTATTTTACCCTTCCTCTTTACAAATAGGTGGTGAGATGAACCTGGATGCTGGCATTCAGGTGGCTCAATTGGCCCTCAAACATCGCCAGAATAAGAAGCAGCAACAAAGGATTATAGTCTTTGCTGGAAGTGTAGCCCTTGATATCATTAATTTTGGTGAAGAAGATGAAGAAAAGTCAGAGAAGCTAGAAGCACTTCTTGCTGCTGTGAACAATAATGACACCAGCCACATTGTTCATGTTTCGGCTGGTCCAAGTGCTCTTTCTGATGTACTCATAAGTACACCTATCTTCACTGGAGATGGAGAAGGTGGGAGTGGGATTAAGATTAAGTCTATTGTTGAAGCTTCAAAGCCGTGGCCATCGGTGAGCATGTCCAGGTGGTTACTCACGGTGAATCATGCCTTACCATTTGCCTCTCTTCAAATGTCTATGCAGGAAGGTGAAAAAGATTCTGCTAGCGATAAAGATATGAGTAAATTATTGGCTGATCAGTCTTTTGTGTCTTCTATCCTTGCCTCGCTTCCAGGGGTTGACCCAAATGATCCTTCAGTAAGAGACTTGCTTGCTTCTATGCAAAACCAGTCAGAGTGCTCATATCAAGATATGCTCTGTCATGGCAAAAACCCTTTGCCCGGTTTGATATGTTTGCTCGACTATGACCTTTCACAGGGTTGTATGGTCGCGGTTCCAAGTCTCAACACTGCATCACATTGTGTGTTTTGGTCATTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000502 GO:0001101 GO:0001653 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010015 GO:0010029 GO:0010033 GO:0010053 GO:0010054 GO:0010150 GO:0010498 GO:0016020 GO:0016043 GO:0016049 GO:0019538 GO:0019941 GO:0021700 GO:0022414 GO:0022607 GO:0022622 GO:0023052 GO:0030154 GO:0030163 GO:0031593 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0033993 GO:0034285 GO:0034622 GO:0035966 GO:0038023 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048364 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048468 GO:0048469 GO:0048528 GO:0048580 GO:0048588 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051788 GO:0060089 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080147 GO:0090558 GO:0090567 GO:0090627 GO:0090693 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0099402 GO:0140030 GO:1900140 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369 GO:1905392 GO:1905393 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
UIM VWA_2

Protein Analysis

262

Amino Acids

28.32

Weight (kDa)

4.6

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 737
AciI CCGC 1 cut(s) 737
AclWI GGATC 1 cut(s) 590
AcoI YGGCCR 1 cut(s) 410
AcuI CTGAAG 1 cut(s) 585
AdeI CACNNNGTG 1 cut(s) 767
AfaI GTAC 2 cut(s) 324, 334
AfiI CCNNNNNNNGG 2 cut(s) 686, 721
AgsI TTSAA 4 cut(s) 14, 395, 402, 476
AjnI CCWGG 3 cut(s) 93, 428, 577
AjuI GAANNNNNNNTTGG 4 cut(s) 298, 330, 583, 615
AluBI AGCT 2 cut(s) 238, 398
AluI AGCT 2 cut(s) 238, 398
Alw21I GWGCWC 2 cut(s) 313, 647
Alw26I GTCTC 3 cut(s) 9, 603, 752
AlwI GGATC 1 cut(s) 590
AoxI GGCC 2 cut(s) 123, 410
ApeKI GCWGC 2 cut(s) 151, 254
AseI ATTAAT 1 cut(s) 201
Asp700I GAANNNNTTC 1 cut(s) 246
AspS9I GGNCC 2 cut(s) 124, 302
AsuC2I CCSGG 1 cut(s) 687
AsuHPI GGTGA 5 cut(s) 95, 221, 430, 457, 506
AsuNHI GCTAGC 1 cut(s) 509
AvaII GGWCC 1 cut(s) 302
BalI TGGCCA 1 cut(s) 412
BbsI GAAGAC 1 cut(s) 549
Bbv12I GWGCWC 2 cut(s) 313, 647
BbvI GCAGC 2 cut(s) 163, 241
BccI CCATC 3 cut(s) 35, 347, 421
BceAI ACGGC 1 cut(s) 391
BciT130I CCWGG 3 cut(s) 95, 430, 579
BclI TGATCA 1 cut(s) 541
BcnI CCSGG 1 cut(s) 687
BcoDI GTCTC 3 cut(s) 9, 603, 752
BfaI CTAG 2 cut(s) 239, 510
BisI GCNGC 2 cut(s) 152, 255
BlsI GCNGC 2 cut(s) 153, 256
Bme1390I CCNGG 4 cut(s) 95, 430, 579, 687
Bme18I GGWCC 1 cut(s) 302
BmgT120I GGNCC 2 cut(s) 124, 302
BmiI GGNNCC 1 cut(s) 741
BmrFI CCNGG 4 cut(s) 95, 430, 579, 687
BmsI GCATC 2 cut(s) 88, 767
BmtI GCTAGC 1 cut(s) 513
BpiI GAAGAC 1 cut(s) 549
BpmI CTGGAG 1 cut(s) 369
BpuMI CCSGG 1 cut(s) 687
BsaJI CCNNGG 2 cut(s) 407, 578
Bsc4I CCNNNNNNNGG 2 cut(s) 686, 721
Bse1I ACTGG 2 cut(s) 352, 634
BseBI CCWGG 3 cut(s) 95, 430, 579
BseDI CCNNGG 2 cut(s) 407, 578
BseGI GGATG 1 cut(s) 103
BseLI CCNNNNNNNGG 2 cut(s) 686, 721
BseNI ACTGG 2 cut(s) 352, 634
BseXI GCAGC 2 cut(s) 163, 241
Bsh1236I CGCG 1 cut(s) 737
BshFI GGCC 2 cut(s) 125, 412
BsiHKAI GWGCWC 2 cut(s) 313, 647
BsiSI CCGG 1 cut(s) 687
BslI CCNNNNNNNGG 2 cut(s) 686, 721
BsmAI GTCTC 3 cut(s) 9, 603, 752
BsmI GAATGC 1 cut(s) 105
BsnI GGCC 2 cut(s) 125, 412
Bsp1286I GDGCHC 2 cut(s) 313, 647
Bsp143I GATC 2 cut(s) 541, 595
BspACI CCGC 1 cut(s) 737
BspANI GGCC 2 cut(s) 125, 412
BspFNI CGCG 1 cut(s) 737
BspLI GGNNCC 1 cut(s) 741
BspOI GCTAGC 1 cut(s) 513
BspPI GGATC 1 cut(s) 590
BsrI ACTGG 2 cut(s) 352, 634
BssECI CCNNGG 2 cut(s) 407, 578
BssMI GATC 2 cut(s) 541, 595
Bst2UI CCWGG 3 cut(s) 95, 430, 579
Bst4CI ACNGT 1 cut(s) 445
Bst6I CTCTTC 1 cut(s) 477
BstAPI GCANNNNNTGC 1 cut(s) 251
BstC8I GCNNGC 3 cut(s) 103, 511, 618
BstDSI CCRYGG 1 cut(s) 407
BstENI CCTNNNNNAGG 1 cut(s) 719
BstF5I GGATG 1 cut(s) 103
BstFNI CGCG 1 cut(s) 737
BstKTI GATC 2 cut(s) 544, 598
BstMAI GTCTC 3 cut(s) 9, 603, 752
BstMBI GATC 2 cut(s) 541, 595
BstMWI GCNNNNNNNGC 2 cut(s) 122, 251
BstNI CCWGG 3 cut(s) 95, 430, 579
BstNSI RCATGY 1 cut(s) 427
BstSCI CCNGG 4 cut(s) 93, 428, 577, 685
BstUI CGCG 1 cut(s) 737
BstV1I GCAGC 2 cut(s) 163, 241
BstV2I GAAGAC 1 cut(s) 549
BsuRI GGCC 2 cut(s) 125, 412
BtgI CCRYGG 1 cut(s) 407
BtgZI GCGATG 1 cut(s) 119
BtsCI GGATG 1 cut(s) 103
BtsI GCAGTG 1 cut(s) 753
BtsIMutI CAGTG 2 cut(s) 345, 753
Cac8I GCNNGC 3 cut(s) 103, 511, 618
Cfr13I GGNCC 2 cut(s) 124, 302
Csp6I GTAC 2 cut(s) 323, 333
CviAII CATG 5 cut(s) 17, 290, 424, 452, 668
CviQI GTAC 2 cut(s) 323, 333
DpnI GATC 2 cut(s) 543, 597
DpnII GATC 2 cut(s) 541, 595
DraIII CACNNNGTG 1 cut(s) 767
EaeI YGGCCR 1 cut(s) 410
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
Eco32I GATATC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 302
Eco57I CTGAAG 1 cut(s) 585
EcoNI CCTNNNNNAGG 1 cut(s) 719
EcoRII CCWGG 3 cut(s) 93, 428, 577
EcoRV GATATC 1 cut(s) 196
FaeI CATG 5 cut(s) 20, 293, 427, 455, 671
FalI AAGNNNNNCTT 2 cut(s) 234, 266
FatI CATG 5 cut(s) 16, 289, 423, 451, 667
FbaI TGATCA 1 cut(s) 541
Fnu4HI GCNGC 2 cut(s) 152, 255
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 2 cut(s) 152, 255
FspBI CTAG 2 cut(s) 239, 510
GluI GCNGC 2 cut(s) 152, 255
GsuI CTGGAG 1 cut(s) 369
HaeIII GGCC 2 cut(s) 125, 412
HapII CCGG 1 cut(s) 687
Hin1II CATG 5 cut(s) 20, 293, 427, 455, 671
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HindIII AAGCTT 1 cut(s) 396
HinfI GANTC 2 cut(s) 448, 503
HpaII CCGG 1 cut(s) 687
HphI GGTGA 5 cut(s) 95, 221, 430, 457, 506
Hpy166II GTNNAC 3 cut(s) 262, 335, 586
Hpy188I TCNGA 3 cut(s) 232, 319, 640
Hpy188III TCNNGA 1 cut(s) 653
Hpy8I GTNNAC 3 cut(s) 262, 335, 586
HpyAV CCTTC 4 cut(s) 72, 353, 485, 609
HpyCH4III ACNGT 1 cut(s) 445
HpyCH4V TGCA 3 cut(s) 487, 628, 758
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 251
Hsp92II CATG 5 cut(s) 20, 293, 427, 455, 671
Ksp22I TGATCA 1 cut(s) 541
Kzo9I GATC 2 cut(s) 541, 595
Lsp1109I GCAGC 2 cut(s) 163, 241
LweI GCATC 2 cut(s) 88, 767
MaeI CTAG 2 cut(s) 239, 510
MaeIII GTNAC 1 cut(s) 435
MalI GATC 2 cut(s) 543, 597
MboI GATC 2 cut(s) 541, 595
MboII GAAGA 6 cut(s) 224, 227, 233, 334, 464, 549
MfeI CAATTG 1 cut(s) 119
MhlI GDGCHC 2 cut(s) 313, 647
MlsI TGGCCA 1 cut(s) 412
MluCI AATT 3 cut(s) 119, 202, 530
MluNI TGGCCA 1 cut(s) 412
MnlI CCTC 5 cut(s) 43, 76, 137, 478, 580
Mox20I TGGCCA 1 cut(s) 412
MroXI GAANNNNTTC 1 cut(s) 246
MscI TGGCCA 1 cut(s) 412
MseI TTAA 3 cut(s) 201, 375, 381
MslI CAYNNNNRTG 1 cut(s) 110
Msp20I TGGCCA 1 cut(s) 412
MspI CCGG 1 cut(s) 687
MspR9I CCNGG 4 cut(s) 95, 430, 579, 687
MunI CAATTG 1 cut(s) 119
Mva1269I GAATGC 1 cut(s) 105
MvaI CCWGG 3 cut(s) 95, 430, 579
MvnI CGCG 1 cut(s) 737
MwoI GCNNNNNNNGC 2 cut(s) 122, 251
NciI CCSGG 1 cut(s) 687
NdeII GATC 2 cut(s) 541, 595
NheI GCTAGC 1 cut(s) 509
NlaIII CATG 5 cut(s) 20, 293, 427, 455, 671
NlaIV GGNNCC 1 cut(s) 741
NspI RCATGY 1 cut(s) 427
PctI GAATGC 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 246
PfeI GAWTC 2 cut(s) 448, 503
PkrI GCNGC 2 cut(s) 153, 256
PshBI ATTAAT 1 cut(s) 201
Psp6I CCWGG 3 cut(s) 93, 428, 577
PspGI CCWGG 3 cut(s) 93, 428, 577
PspN4I GGNNCC 1 cut(s) 741
PspPI GGNCC 2 cut(s) 124, 302
RsaI GTAC 2 cut(s) 324, 334
RsaNI GTAC 2 cut(s) 323, 333
RseI CAYNNNNRTG 1 cut(s) 110
SaqAI TTAA 3 cut(s) 201, 375, 381
SatI GCNGC 2 cut(s) 152, 255
Sau3AI GATC 2 cut(s) 541, 595
Sau96I GGNCC 2 cut(s) 124, 302
ScrFI CCNGG 4 cut(s) 95, 430, 579, 687
SduI GDGCHC 2 cut(s) 313, 647
SfaNI GCATC 2 cut(s) 88, 767
SinI GGWCC 1 cut(s) 302
SmiMI CAYNNNNRTG 1 cut(s) 110
Sse9I AATT 3 cut(s) 119, 202, 530
SsiI CCGC 1 cut(s) 737
SspMI CTAG 2 cut(s) 239, 510
StyD4I CCNGG 4 cut(s) 93, 428, 577, 685
TaaI ACNGT 1 cut(s) 445
TaqI TCGA 1 cut(s) 705
TasI AATT 3 cut(s) 119, 202, 530
TatI WGTACW 2 cut(s) 322, 332
TfiI GAWTC 2 cut(s) 448, 503
Tru1I TTAA 3 cut(s) 201, 375, 381
Tru9I TTAA 3 cut(s) 201, 375, 381
TscAI CASTG 2 cut(s) 352, 760
TseI GCWGC 2 cut(s) 151, 254
TspDTI ATGAA 3 cut(s) 104, 234, 278
TspRI CASTG 2 cut(s) 352, 760
VpaK11BI GGWCC 1 cut(s) 302
VspI ATTAAT 1 cut(s) 201
XagI CCTNNNNNAGG 1 cut(s) 719
XceI RCATGY 1 cut(s) 427
XmnI GAANNNNTTC 1 cut(s) 246
XspI CTAG 2 cut(s) 239, 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.