Rh4BG229500

26S proteasome non-atpase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0016431
Physical Location & Seq
Forward (+)
39392905 .. 39393981
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG229500.1

Sequence Viewer

Length: 435 bp
ATGAACCTGGCTGCTGGCATTCAGGTGGCTCAATTGGCTCTCAAACATCGCCAGAATAAGAAGCAGCAACAAAGGATTATAGTCTTTGCTGGAAGTGTAGCCCTTGATGAAGAAAAGTCAGAGAAGCTAGAAGCACTTCTTGCTGCTGTGAACAATAATGACACCAGCCACATTGTTCATGTTTCGGCTGGTCCAAGTGCTCTTTCTGATGTACTCATAAGTACACCTATCTTCACTGGAGATGGAGAAGGTGGGAGTGGGATTAAGATTAAGTCTATTGTTGAAGCTTCAAAGCCGTGGCCATCGGTGAGCATGTCCAGGTGGTTACTCACGGTGAATCATGCCTTACCATTTGCCTCTCTTCAAATGTCTGTGCAGGAAGGTGAAAAAGATTCTGCTAGCGATAAAGATATGAGTAAATTATTGGCTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000502 GO:0001101 GO:0001653 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010015 GO:0010029 GO:0010033 GO:0010053 GO:0010054 GO:0010150 GO:0010498 GO:0016020 GO:0016043 GO:0016049 GO:0019538 GO:0019941 GO:0021700 GO:0022414 GO:0022607 GO:0022622 GO:0023052 GO:0030154 GO:0030163 GO:0031593 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0033993 GO:0034285 GO:0034622 GO:0035966 GO:0038023 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048364 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048468 GO:0048469 GO:0048528 GO:0048580 GO:0048588 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051788 GO:0060089 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080147 GO:0090558 GO:0090567 GO:0090627 GO:0090693 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0099402 GO:0140030 GO:1900140 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369 GO:1905392 GO:1905393 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
UIM VWA_2

Protein Analysis

144

Amino Acids

15.36

Weight (kDa)

6.06

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 299
AfaI GTAC 2 cut(s) 213, 223
AgsI TTSAA 3 cut(s) 284, 291, 365
AjnI CCWGG 2 cut(s) 6, 317
AjuI GAANNNNNNNTTGG 2 cut(s) 187, 219
AluBI AGCT 2 cut(s) 127, 287
AluI AGCT 2 cut(s) 127, 287
Alw21I GWGCWC 1 cut(s) 202
AoxI GGCC 1 cut(s) 299
ApeKI GCWGC 3 cut(s) 11, 64, 143
Asp700I GAANNNNTTC 1 cut(s) 135
AspS9I GGNCC 1 cut(s) 191
AsuHPI GGTGA 3 cut(s) 319, 346, 395
AsuNHI GCTAGC 1 cut(s) 398
AvaII GGWCC 1 cut(s) 191
BalI TGGCCA 1 cut(s) 301
Bbv12I GWGCWC 1 cut(s) 202
BbvI GCAGC 2 cut(s) 76, 130
BccI CCATC 2 cut(s) 236, 310
BceAI ACGGC 1 cut(s) 280
BciT130I CCWGG 2 cut(s) 8, 319
BfaI CTAG 2 cut(s) 128, 399
BisI GCNGC 3 cut(s) 12, 65, 144
BlsI GCNGC 3 cut(s) 13, 66, 145
Bme1390I CCNGG 2 cut(s) 8, 319
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 191
BmrFI CCNGG 2 cut(s) 8, 319
BmtI GCTAGC 1 cut(s) 402
BpmI CTGGAG 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 296
Bse1I ACTGG 1 cut(s) 241
BseBI CCWGG 2 cut(s) 8, 319
BseDI CCNNGG 1 cut(s) 296
BseNI ACTGG 1 cut(s) 241
BseXI GCAGC 2 cut(s) 76, 130
BsgI GTGCAG 1 cut(s) 395
BshFI GGCC 1 cut(s) 301
BsiHKAI GWGCWC 1 cut(s) 202
BsmI GAATGC 1 cut(s) 18
BsnI GGCC 1 cut(s) 301
Bsp1286I GDGCHC 1 cut(s) 202
BspANI GGCC 1 cut(s) 301
BspOI GCTAGC 1 cut(s) 402
BsrI ACTGG 1 cut(s) 241
BssECI CCNNGG 1 cut(s) 296
Bst2UI CCWGG 2 cut(s) 8, 319
Bst4CI ACNGT 1 cut(s) 334
Bst6I CTCTTC 1 cut(s) 366
BstAPI GCANNNNNTGC 1 cut(s) 140
BstC8I GCNNGC 2 cut(s) 16, 400
BstDSI CCRYGG 1 cut(s) 296
BstMWI GCNNNNNNNGC 2 cut(s) 35, 140
BstNI CCWGG 2 cut(s) 8, 319
BstNSI RCATGY 1 cut(s) 316
BstSCI CCNGG 2 cut(s) 6, 317
BstV1I GCAGC 2 cut(s) 76, 130
BsuRI GGCC 1 cut(s) 301
BtgI CCRYGG 1 cut(s) 296
BtgZI GCGATG 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 234
Cac8I GCNNGC 2 cut(s) 16, 400
Cfr13I GGNCC 1 cut(s) 191
Csp6I GTAC 2 cut(s) 212, 222
CviAII CATG 3 cut(s) 179, 313, 341
CviQI GTAC 2 cut(s) 212, 222
EaeI YGGCCR 1 cut(s) 299
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Eco47I GGWCC 1 cut(s) 191
EcoRII CCWGG 2 cut(s) 6, 317
FaeI CATG 3 cut(s) 182, 316, 344
FaiI YATR 6 cut(s) 80, 180, 218, 314, 342, 413
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FatI CATG 3 cut(s) 178, 312, 340
Fnu4HI GCNGC 3 cut(s) 12, 65, 144
Fsp4HI GCNGC 3 cut(s) 12, 65, 144
FspBI CTAG 2 cut(s) 128, 399
GluI GCNGC 3 cut(s) 12, 65, 144
GsuI CTGGAG 1 cut(s) 258
HaeIII GGCC 1 cut(s) 301
Hin1II CATG 3 cut(s) 182, 316, 344
HindIII AAGCTT 1 cut(s) 285
HinfI GANTC 2 cut(s) 337, 392
HphI GGTGA 3 cut(s) 319, 346, 395
Hpy166II GTNNAC 2 cut(s) 151, 224
Hpy188I TCNGA 2 cut(s) 121, 208
Hpy8I GTNNAC 2 cut(s) 151, 224
HpyAV CCTTC 2 cut(s) 242, 374
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4V TGCA 1 cut(s) 376
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 140
Hsp92II CATG 3 cut(s) 182, 316, 344
Lsp1109I GCAGC 2 cut(s) 76, 130
MaeI CTAG 2 cut(s) 128, 399
MaeIII GTNAC 1 cut(s) 324
MboII GAAGA 3 cut(s) 122, 223, 353
MfeI CAATTG 1 cut(s) 32
MhlI GDGCHC 1 cut(s) 202
MlsI TGGCCA 1 cut(s) 301
MluCI AATT 2 cut(s) 32, 419
MluNI TGGCCA 1 cut(s) 301
MnlI CCTC 1 cut(s) 367
Mox20I TGGCCA 1 cut(s) 301
MroXI GAANNNNTTC 1 cut(s) 135
MscI TGGCCA 1 cut(s) 301
MseI TTAA 2 cut(s) 264, 270
MslI CAYNNNNRTG 1 cut(s) 23
Msp20I TGGCCA 1 cut(s) 301
MspR9I CCNGG 2 cut(s) 8, 319
MunI CAATTG 1 cut(s) 32
Mva1269I GAATGC 1 cut(s) 18
MvaI CCWGG 2 cut(s) 8, 319
MwoI GCNNNNNNNGC 2 cut(s) 35, 140
NheI GCTAGC 1 cut(s) 398
NlaIII CATG 3 cut(s) 182, 316, 344
NspI RCATGY 1 cut(s) 316
PctI GAATGC 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 135
PfeI GAWTC 2 cut(s) 337, 392
PkrI GCNGC 3 cut(s) 13, 66, 145
Psp6I CCWGG 2 cut(s) 6, 317
PspGI CCWGG 2 cut(s) 6, 317
PspPI GGNCC 1 cut(s) 191
RsaI GTAC 2 cut(s) 213, 223
RsaNI GTAC 2 cut(s) 212, 222
RseI CAYNNNNRTG 1 cut(s) 23
SaqAI TTAA 2 cut(s) 264, 270
SatI GCNGC 3 cut(s) 12, 65, 144
Sau96I GGNCC 1 cut(s) 191
ScrFI CCNGG 2 cut(s) 8, 319
SduI GDGCHC 1 cut(s) 202
SetI ASST 8 cut(s) 9, 27, 129, 229, 253, 289, 323, 385
SinI GGWCC 1 cut(s) 191
SmiMI CAYNNNNRTG 1 cut(s) 23
Sse9I AATT 2 cut(s) 32, 419
SspMI CTAG 2 cut(s) 128, 399
StyD4I CCNGG 2 cut(s) 6, 317
TaaI ACNGT 1 cut(s) 334
TasI AATT 2 cut(s) 32, 419
TatI WGTACW 2 cut(s) 211, 221
TfiI GAWTC 2 cut(s) 337, 392
Tru1I TTAA 2 cut(s) 264, 270
Tru9I TTAA 2 cut(s) 264, 270
TscAI CASTG 1 cut(s) 241
TseI GCWGC 3 cut(s) 11, 64, 143
TspDTI ATGAA 3 cut(s) 17, 123, 167
TspRI CASTG 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 191
XceI RCATGY 1 cut(s) 316
XmnI GAANNNNTTC 1 cut(s) 135
XspI CTAG 2 cut(s) 128, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.