RchiOBHm_Chr2g0159871

26S proteasome non-atpase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0016431
Physical Location & Seq
Reverse (-)
75885995 .. 75887164
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52840

Sequence Viewer

Length: 495 bp
ATGAACCTGGCTGCTGGCATTCAGTTGGCTCAATTGACCCTCAAACATCGTCAGAATAAGAATGTAGCCCTTGATATCATTAATTTTGGTGAAGAAGATGAAGAAAAGTCAGAGAAGCTAGAAGCACTTCTTGCTGCTGTGAACAATAATGACACCAGCCACATTGTTCATGTTTCGGCTGGTCCAAGTGCTCTTTCTAATGTACTCATAAGTACACCTATCTTCACTGGAGATGGAGAAGGTGGGAGTGGGATTAAGATTAAGTCTATTGTTGAAGCTTCAAAGCCGTGGCCATCGGTGAGCATGTCCAGGTGGTTACTCACGATGAATCATGCCTTACCATTTTCCTCTCTTCAAATGTCTGTGCAGGAAGGTGAAAAAGATTCTGCTAGCGATAAAGATATGAGTAAATTATTGGTTGATCAGTCTTTTGTGTCTTCTATCCTTGCCTCGGTATATCTGTTGCTTCCTCCATTTTTTCCCTCATTCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000502 GO:0001101 GO:0001653 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010015 GO:0010029 GO:0010033 GO:0010053 GO:0010054 GO:0010150 GO:0010498 GO:0016020 GO:0016043 GO:0016049 GO:0019538 GO:0019941 GO:0021700 GO:0022414 GO:0022607 GO:0022622 GO:0023052 GO:0030154 GO:0030163 GO:0031593 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0033993 GO:0034285 GO:0034622 GO:0035966 GO:0038023 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048364 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048468 GO:0048469 GO:0048528 GO:0048580 GO:0048588 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051788 GO:0060089 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080147 GO:0090558 GO:0090567 GO:0090627 GO:0090693 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0099402 GO:0140030 GO:1900140 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369 GO:1905392 GO:1905393 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
UIM VWA_2

Protein Analysis

164

Amino Acids

17.69

Weight (kDa)

5.11

Isoelectric Point (pI)

46.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 290
AfaI GTAC 2 cut(s) 204, 214
AfiI CCNNNNNNNGG 1 cut(s) 451
AgsI TTSAA 3 cut(s) 275, 282, 356
AjnI CCWGG 2 cut(s) 6, 308
AjuI GAANNNNNNNTTGG 2 cut(s) 178, 210
AluBI AGCT 2 cut(s) 118, 278
AluI AGCT 2 cut(s) 118, 278
Alw21I GWGCWC 1 cut(s) 193
AoxI GGCC 1 cut(s) 290
ApeKI GCWGC 2 cut(s) 11, 134
AseI ATTAAT 1 cut(s) 81
Asp700I GAANNNNTTC 1 cut(s) 126
AspS9I GGNCC 1 cut(s) 182
AsuHPI GGTGA 3 cut(s) 101, 310, 386
AsuNHI GCTAGC 1 cut(s) 389
AvaII GGWCC 1 cut(s) 182
BalI TGGCCA 1 cut(s) 292
BbsI GAAGAC 1 cut(s) 429
Bbv12I GWGCWC 1 cut(s) 193
BbvI GCAGC 1 cut(s) 121
BccI CCATC 2 cut(s) 227, 301
BceAI ACGGC 1 cut(s) 271
BciT130I CCWGG 2 cut(s) 8, 310
BclI TGATCA 1 cut(s) 421
BfaI CTAG 2 cut(s) 119, 390
BisI GCNGC 2 cut(s) 12, 135
BlsI GCNGC 2 cut(s) 13, 136
Bme1390I CCNGG 2 cut(s) 8, 310
Bme18I GGWCC 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 182
BmrFI CCNGG 2 cut(s) 8, 310
BmtI GCTAGC 1 cut(s) 393
BpiI GAAGAC 1 cut(s) 429
BpmI CTGGAG 1 cut(s) 249
BsaJI CCNNGG 2 cut(s) 287, 450
Bsc4I CCNNNNNNNGG 1 cut(s) 451
Bse1I ACTGG 1 cut(s) 232
BseBI CCWGG 2 cut(s) 8, 310
BseDI CCNNGG 2 cut(s) 287, 450
BseLI CCNNNNNNNGG 1 cut(s) 451
BseNI ACTGG 1 cut(s) 232
BseXI GCAGC 1 cut(s) 121
BsgI GTGCAG 1 cut(s) 386
BshFI GGCC 1 cut(s) 292
BsiHKAI GWGCWC 1 cut(s) 193
BslI CCNNNNNNNGG 1 cut(s) 451
BsmI GAATGC 1 cut(s) 18
BsnI GGCC 1 cut(s) 292
Bsp1286I GDGCHC 1 cut(s) 193
Bsp143I GATC 1 cut(s) 421
BspANI GGCC 1 cut(s) 292
BspOI GCTAGC 1 cut(s) 393
BsrI ACTGG 1 cut(s) 232
BssECI CCNNGG 2 cut(s) 287, 450
BssMI GATC 1 cut(s) 421
Bst2UI CCWGG 2 cut(s) 8, 310
Bst6I CTCTTC 1 cut(s) 357
BstAPI GCANNNNNTGC 1 cut(s) 131
BstC8I GCNNGC 2 cut(s) 16, 391
BstDSI CCRYGG 1 cut(s) 287
BstKTI GATC 1 cut(s) 424
BstMBI GATC 1 cut(s) 421
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 2 cut(s) 8, 310
BstNSI RCATGY 1 cut(s) 307
BstSCI CCNGG 2 cut(s) 6, 308
BstV1I GCAGC 1 cut(s) 121
BstV2I GAAGAC 1 cut(s) 429
BsuRI GGCC 1 cut(s) 292
BtgI CCRYGG 1 cut(s) 287
BtsIMutI CAGTG 1 cut(s) 225
Cac8I GCNNGC 2 cut(s) 16, 391
Cfr13I GGNCC 1 cut(s) 182
Csp6I GTAC 2 cut(s) 203, 213
CviAII CATG 3 cut(s) 170, 304, 332
CviJI RGCY 9 cut(s) 11, 29, 68, 118, 159, 179, 278, 286, 292
CviKI_1 RGCY 9 cut(s) 11, 29, 68, 118, 159, 179, 278, 286, 292
CviQI GTAC 2 cut(s) 203, 213
DpnI GATC 1 cut(s) 423
DpnII GATC 1 cut(s) 421
EaeI YGGCCR 1 cut(s) 290
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
Eco32I GATATC 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 182
EcoRII CCWGG 2 cut(s) 6, 308
EcoRV GATATC 1 cut(s) 76
FaeI CATG 3 cut(s) 173, 307, 335
FaiI YATR 7 cut(s) 171, 209, 305, 333, 404, 457, 493
FalI AAGNNNNNCTT 2 cut(s) 114, 146
FatI CATG 3 cut(s) 169, 303, 331
FbaI TGATCA 1 cut(s) 421
Fnu4HI GCNGC 2 cut(s) 12, 135
Fsp4HI GCNGC 2 cut(s) 12, 135
FspBI CTAG 2 cut(s) 119, 390
GluI GCNGC 2 cut(s) 12, 135
GsuI CTGGAG 1 cut(s) 249
HaeIII GGCC 1 cut(s) 292
Hin1II CATG 3 cut(s) 173, 307, 335
HindIII AAGCTT 1 cut(s) 276
HinfI GANTC 2 cut(s) 328, 383
HphI GGTGA 3 cut(s) 101, 310, 386
Hpy166II GTNNAC 2 cut(s) 142, 215
Hpy188I TCNGA 2 cut(s) 54, 112
Hpy188III TCNNGA 1 cut(s) 322
Hpy8I GTNNAC 2 cut(s) 142, 215
HpyAV CCTTC 2 cut(s) 233, 365
HpyCH4V TGCA 1 cut(s) 367
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
Hsp92II CATG 3 cut(s) 173, 307, 335
Ksp22I TGATCA 1 cut(s) 421
Kzo9I GATC 1 cut(s) 421
LpnPI CCDG 7 cut(s) 20, 165, 169, 213, 295, 322, 353
Lsp1109I GCAGC 1 cut(s) 121
MaeI CTAG 2 cut(s) 119, 390
MaeIII GTNAC 1 cut(s) 315
MalI GATC 1 cut(s) 423
MboI GATC 1 cut(s) 421
MboII GAAGA 6 cut(s) 104, 107, 113, 214, 344, 429
MfeI CAATTG 1 cut(s) 32
MhlI GDGCHC 1 cut(s) 193
MlsI TGGCCA 1 cut(s) 292
MluCI AATT 3 cut(s) 32, 82, 410
MluNI TGGCCA 1 cut(s) 292
MnlI CCTC 5 cut(s) 50, 358, 460, 480, 493
Mox20I TGGCCA 1 cut(s) 292
MroXI GAANNNNTTC 1 cut(s) 126
MscI TGGCCA 1 cut(s) 292
MseI TTAA 3 cut(s) 81, 255, 261
Msp20I TGGCCA 1 cut(s) 292
MspR9I CCNGG 2 cut(s) 8, 310
MunI CAATTG 1 cut(s) 32
Mva1269I GAATGC 1 cut(s) 18
MvaI CCWGG 2 cut(s) 8, 310
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 1 cut(s) 421
NheI GCTAGC 1 cut(s) 389
NlaIII CATG 3 cut(s) 173, 307, 335
NspI RCATGY 1 cut(s) 307
PctI GAATGC 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 126
PfeI GAWTC 2 cut(s) 328, 383
PkrI GCNGC 2 cut(s) 13, 136
PshBI ATTAAT 1 cut(s) 81
Psp6I CCWGG 2 cut(s) 6, 308
PspGI CCWGG 2 cut(s) 6, 308
PspPI GGNCC 1 cut(s) 182
RsaI GTAC 2 cut(s) 204, 214
RsaNI GTAC 2 cut(s) 203, 213
SaqAI TTAA 3 cut(s) 81, 255, 261
SatI GCNGC 2 cut(s) 12, 135
Sau3AI GATC 1 cut(s) 421
Sau96I GGNCC 1 cut(s) 182
ScrFI CCNGG 2 cut(s) 8, 310
SduI GDGCHC 1 cut(s) 193
SetI ASST 7 cut(s) 9, 120, 220, 244, 280, 314, 376
SinI GGWCC 1 cut(s) 182
Sse9I AATT 3 cut(s) 32, 82, 410
SspMI CTAG 2 cut(s) 119, 390
StyD4I CCNGG 2 cut(s) 6, 308
TasI AATT 3 cut(s) 32, 82, 410
TatI WGTACW 2 cut(s) 202, 212
TfiI GAWTC 2 cut(s) 328, 383
Tru1I TTAA 3 cut(s) 81, 255, 261
Tru9I TTAA 3 cut(s) 81, 255, 261
TscAI CASTG 1 cut(s) 232
TseI GCWGC 2 cut(s) 11, 134
TspDTI ATGAA 4 cut(s) 17, 114, 158, 341
TspRI CASTG 1 cut(s) 232
VpaK11BI GGWCC 1 cut(s) 182
VspI ATTAAT 1 cut(s) 81
XceI RCATGY 1 cut(s) 307
XmnI GAANNNNTTC 1 cut(s) 126
XspI CTAG 2 cut(s) 119, 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.