Rroxscaffold_5G00339200

26S proteasome non-atpase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0016431
Physical Location & Seq
Forward (+)
7534024 .. 7538357
4334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00339200.1

Sequence Viewer

Length: 489 bp
ATGTCTCCCTTTGAACATGGCGAGTTTTTTGTTCTTGATGATGGTGGAGAGGTATTTTACCCTTCCTCTTTACAAATAGGTGAAGACTTTGGAGATGATTGGAAGAATAGTGTAGCCCTTGATATCATTAATTTTGGTGAAGAAGATGAAGAAAAGTCGGAGAAGCTAGAAGCACTTCTTCTTGCTGTGAACAATAATGACACCAGCCACATTGTTCATGTTTCGGCTGGTCCAAGTGCTCTTTCGATTACACCTATCTTCACTGGAGATGGAGAAGGTGGGAGTGGGATTAAGATTAAGTCTATTGTTGAAGCTTCAAAGCCGTGGCCATCGGAAGGTGAAAAAGATTCTGCTAGCGATAAAGATATGAGTAAATTATTGGCTGATCGGTCTTTTGTGTCTTCTATCCTTGCCTCGCTTCCAGGGGTTGACCCAAATGATCCTTCGATAAGAGACTTGCTTGCTTCTATGCAAAACCAGTCGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000502 GO:0001101 GO:0001653 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010015 GO:0010029 GO:0010033 GO:0010053 GO:0010054 GO:0010150 GO:0010498 GO:0016020 GO:0016043 GO:0016049 GO:0019538 GO:0019941 GO:0021700 GO:0022414 GO:0022607 GO:0022622 GO:0023052 GO:0030154 GO:0030163 GO:0031593 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0033993 GO:0034285 GO:0034622 GO:0035966 GO:0038023 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048364 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048468 GO:0048469 GO:0048528 GO:0048580 GO:0048588 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051788 GO:0060089 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080147 GO:0090558 GO:0090567 GO:0090627 GO:0090693 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0099402 GO:0140030 GO:1900140 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369 GO:1905392 GO:1905393 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
UIM VWA_2

Protein Analysis

162

Amino Acids

17.4

Weight (kDa)

4.24

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 434
AcoI YGGCCR 1 cut(s) 326
AfiI CCNNNNNNNGG 1 cut(s) 335
AgsI TTSAA 3 cut(s) 14, 311, 318
AjnI CCWGG 1 cut(s) 421
AjuI GAANNNNNNNTTGG 4 cut(s) 226, 258, 427, 459
AluBI AGCT 2 cut(s) 166, 314
AluI AGCT 2 cut(s) 166, 314
Alw21I GWGCWC 1 cut(s) 241
Alw26I GTCTC 2 cut(s) 9, 447
AlwI GGATC 1 cut(s) 434
AoxI GGCC 1 cut(s) 326
AseI ATTAAT 1 cut(s) 129
Asp700I GAANNNNTTC 1 cut(s) 174
AspS9I GGNCC 1 cut(s) 230
AsuHPI GGTGA 3 cut(s) 92, 149, 350
AsuNHI GCTAGC 1 cut(s) 353
AvaII GGWCC 1 cut(s) 230
BalI TGGCCA 1 cut(s) 328
BbsI GAAGAC 2 cut(s) 90, 393
Bbv12I GWGCWC 1 cut(s) 241
BccI CCATC 3 cut(s) 35, 263, 337
BceAI ACGGC 1 cut(s) 307
BciT130I CCWGG 1 cut(s) 423
BcoDI GTCTC 2 cut(s) 9, 447
BfaI CTAG 2 cut(s) 167, 354
Bme1390I CCNGG 1 cut(s) 423
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 230
BmrFI CCNGG 1 cut(s) 423
BmtI GCTAGC 1 cut(s) 357
BpiI GAAGAC 2 cut(s) 90, 393
BpmI CTGGAG 1 cut(s) 285
BsaJI CCNNGG 2 cut(s) 323, 422
Bsc4I CCNNNNNNNGG 1 cut(s) 335
Bse1I ACTGG 2 cut(s) 268, 478
BseBI CCWGG 1 cut(s) 423
BseDI CCNNGG 2 cut(s) 323, 422
BseLI CCNNNNNNNGG 1 cut(s) 335
BseNI ACTGG 2 cut(s) 268, 478
BshFI GGCC 1 cut(s) 328
BsiHKAI GWGCWC 1 cut(s) 241
BslI CCNNNNNNNGG 1 cut(s) 335
BsmAI GTCTC 2 cut(s) 9, 447
BsnI GGCC 1 cut(s) 328
Bsp1286I GDGCHC 1 cut(s) 241
Bsp143I GATC 2 cut(s) 385, 439
BspANI GGCC 1 cut(s) 328
BspOI GCTAGC 1 cut(s) 357
BspPI GGATC 1 cut(s) 434
BsrI ACTGG 2 cut(s) 268, 478
BssECI CCNNGG 2 cut(s) 323, 422
BssMI GATC 2 cut(s) 385, 439
Bst2UI CCWGG 1 cut(s) 423
BstC8I GCNNGC 2 cut(s) 355, 462
BstDSI CCRYGG 1 cut(s) 323
BstKTI GATC 2 cut(s) 388, 442
BstMAI GTCTC 2 cut(s) 9, 447
BstMBI GATC 2 cut(s) 385, 439
BstNI CCWGG 1 cut(s) 423
BstSCI CCNGG 1 cut(s) 421
BstV2I GAAGAC 2 cut(s) 90, 393
BsuRI GGCC 1 cut(s) 328
BtgI CCRYGG 1 cut(s) 323
BtsIMutI CAGTG 1 cut(s) 261
Cac8I GCNNGC 2 cut(s) 355, 462
Cfr13I GGNCC 1 cut(s) 230
CviAII CATG 2 cut(s) 17, 218
CviJI RGCY 8 cut(s) 116, 166, 207, 227, 314, 322, 328, 383
CviKI_1 RGCY 8 cut(s) 116, 166, 207, 227, 314, 322, 328, 383
DpnI GATC 2 cut(s) 387, 441
DpnII GATC 2 cut(s) 385, 439
EaeI YGGCCR 1 cut(s) 326
Eco32I GATATC 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 421
EcoRV GATATC 1 cut(s) 124
FaeI CATG 2 cut(s) 20, 221
FaiI YATR 4 cut(s) 18, 219, 368, 470
FalI AAGNNNNNCTT 2 cut(s) 162, 194
FatI CATG 2 cut(s) 16, 217
FspBI CTAG 2 cut(s) 167, 354
GsuI CTGGAG 1 cut(s) 285
HaeIII GGCC 1 cut(s) 328
Hin1II CATG 2 cut(s) 20, 221
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HindIII AAGCTT 1 cut(s) 312
HinfI GANTC 1 cut(s) 347
HphI GGTGA 3 cut(s) 92, 149, 350
Hpy166II GTNNAC 2 cut(s) 190, 430
Hpy188I TCNGA 2 cut(s) 160, 334
Hpy188III TCNNGA 1 cut(s) 35
Hpy8I GTNNAC 2 cut(s) 190, 430
HpyAV CCTTC 4 cut(s) 72, 269, 329, 453
HpyCH4V TGCA 1 cut(s) 472
Hsp92II CATG 2 cut(s) 20, 221
Kzo9I GATC 2 cut(s) 385, 439
LpnPI CCDG 5 cut(s) 213, 217, 249, 408, 435
MaeI CTAG 2 cut(s) 167, 354
MalI GATC 2 cut(s) 387, 441
MboI GATC 2 cut(s) 385, 439
MboII GAAGA 8 cut(s) 95, 115, 152, 155, 161, 170, 250, 393
MhlI GDGCHC 1 cut(s) 241
MlsI TGGCCA 1 cut(s) 328
MluCI AATT 2 cut(s) 130, 374
MluNI TGGCCA 1 cut(s) 328
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 4 cut(s) 43, 76, 424, 477
Mox20I TGGCCA 1 cut(s) 328
MroXI GAANNNNTTC 1 cut(s) 174
MscI TGGCCA 1 cut(s) 328
MseI TTAA 3 cut(s) 129, 291, 297
Msp20I TGGCCA 1 cut(s) 328
MspR9I CCNGG 1 cut(s) 423
MvaI CCWGG 1 cut(s) 423
NdeII GATC 2 cut(s) 385, 439
NheI GCTAGC 1 cut(s) 353
NlaIII CATG 2 cut(s) 20, 221
PdmI GAANNNNTTC 1 cut(s) 174
PfeI GAWTC 1 cut(s) 347
PshBI ATTAAT 1 cut(s) 129
Psp6I CCWGG 1 cut(s) 421
PspGI CCWGG 1 cut(s) 421
PspPI GGNCC 1 cut(s) 230
SaqAI TTAA 3 cut(s) 129, 291, 297
Sau3AI GATC 2 cut(s) 385, 439
Sau96I GGNCC 1 cut(s) 230
ScrFI CCNGG 1 cut(s) 423
SduI GDGCHC 1 cut(s) 241
SetI ASST 8 cut(s) 54, 82, 168, 256, 280, 316, 340, 488
SinI GGWCC 1 cut(s) 230
Sse9I AATT 2 cut(s) 130, 374
SspMI CTAG 2 cut(s) 167, 354
StyD4I CCNGG 1 cut(s) 421
TaqI TCGA 3 cut(s) 245, 446, 482
TaqII GACCGA 1 cut(s) 378
TasI AATT 2 cut(s) 130, 374
TfiI GAWTC 1 cut(s) 347
Tru1I TTAA 3 cut(s) 129, 291, 297
Tru9I TTAA 3 cut(s) 129, 291, 297
TscAI CASTG 1 cut(s) 268
TspDTI ATGAA 2 cut(s) 162, 206
TspRI CASTG 1 cut(s) 268
VpaK11BI GGWCC 1 cut(s) 230
VspI ATTAAT 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 174
XspI CTAG 2 cut(s) 167, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.