RchiOBHm_Chr6g0273251

26S proteasome non-atpase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0016431
Physical Location & Seq
Forward (+)
34087067 .. 34090546
3480 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24515

Sequence Viewer

Length: 702 bp
ATGTCTCCCTTTGAACATGGCGAGTTTTTTGTTCTTGATGATGGTGGAGAGGTATTTTACCCTTCCTCTTTACAAATAGGTGGTGAGATGAACCTGGATGCTGGCATTCAGGTGGCTCAATTGGCCCTCAAACATCGCCAGAATAAGAAGCAGCAACAAAGGATTATAGTCTTTGCTGGAAGTTCTTACTTTGGAGATGATTGGAAGAACAGTGTAGCCCTTGATATCATTAATTTTGGTGAAGAAGATGAAGAAAAGTCAGAGAAGCTAGAAGCACTTCTTGCTGCTGTGAACAATAATGACACCAGCCACATTGTTCATGTTTCGGCTGGTCCAAGTGCTCTTTCTGATGTACTCATAAGTACACCTATCTTCACTGGAGATGGAGAAGGTGGGAGTGGGATTAAGATTAAGTCTATTGTTGAAGCTTCAAAGCCGTGGCCATCGGTGAGCATGTCCAGGTGGTTACTCACGGTGAATCATGCCTTACCATTTGCCTCTCTTCAAATGTCTGTGCAGGAAGGTGAAAAAGATTCTGCTAGCGATAAAGATATGAGTAAATTATTGGCTGATCAGTCTTTTGTGTCTTCTATCCTTGCCTCGCTTCCAGGGGTTGACCCAAATGATCCTTCAGTAAGAGACTTGCTTGCTTCTATGCAAAACCAGTCAGAGTTCTATTTGAGAGTAAGAATATCGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000502 GO:0001101 GO:0001653 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010015 GO:0010029 GO:0010033 GO:0010053 GO:0010054 GO:0010150 GO:0010498 GO:0016020 GO:0016043 GO:0016049 GO:0019538 GO:0019941 GO:0021700 GO:0022414 GO:0022607 GO:0022622 GO:0023052 GO:0030154 GO:0030163 GO:0031593 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0033993 GO:0034285 GO:0034622 GO:0035966 GO:0038023 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048364 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048468 GO:0048469 GO:0048528 GO:0048580 GO:0048588 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051788 GO:0060089 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080147 GO:0090558 GO:0090567 GO:0090627 GO:0090693 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0099402 GO:0140030 GO:1900140 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369 GO:1905392 GO:1905393 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
UIM VWA_2

Protein Analysis

233

Amino Acids

25.32

Weight (kDa)

4.65

Isoelectric Point (pI)

47.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 620
AcoI YGGCCR 1 cut(s) 440
AcuI CTGAAG 1 cut(s) 615
AfaI GTAC 2 cut(s) 354, 364
AgsI TTSAA 4 cut(s) 14, 425, 432, 506
AjnI CCWGG 3 cut(s) 93, 458, 607
AjuI GAANNNNNNNTTGG 4 cut(s) 328, 360, 613, 645
AluBI AGCT 2 cut(s) 268, 428
AluI AGCT 2 cut(s) 268, 428
Alw21I GWGCWC 1 cut(s) 343
Alw26I GTCTC 2 cut(s) 9, 633
AlwI GGATC 1 cut(s) 620
AoxI GGCC 2 cut(s) 123, 440
ApeKI GCWGC 2 cut(s) 151, 284
AseI ATTAAT 1 cut(s) 231
Asp700I GAANNNNTTC 1 cut(s) 276
AspS9I GGNCC 2 cut(s) 124, 332
AsuHPI GGTGA 5 cut(s) 95, 251, 460, 487, 536
AsuNHI GCTAGC 1 cut(s) 539
AvaII GGWCC 1 cut(s) 332
BalI TGGCCA 1 cut(s) 442
BbsI GAAGAC 1 cut(s) 579
Bbv12I GWGCWC 1 cut(s) 343
BbvI GCAGC 2 cut(s) 163, 271
BccI CCATC 3 cut(s) 35, 377, 451
BceAI ACGGC 1 cut(s) 421
BciT130I CCWGG 3 cut(s) 95, 460, 609
BclI TGATCA 1 cut(s) 571
BcoDI GTCTC 2 cut(s) 9, 633
BfaI CTAG 2 cut(s) 269, 540
BisI GCNGC 2 cut(s) 152, 285
BlsI GCNGC 2 cut(s) 153, 286
Bme1390I CCNGG 3 cut(s) 95, 460, 609
Bme18I GGWCC 1 cut(s) 332
BmgT120I GGNCC 2 cut(s) 124, 332
BmrFI CCNGG 3 cut(s) 95, 460, 609
BmsI GCATC 1 cut(s) 88
BmtI GCTAGC 1 cut(s) 543
BpiI GAAGAC 1 cut(s) 579
BpmI CTGGAG 1 cut(s) 399
BsaJI CCNNGG 2 cut(s) 437, 608
Bse1I ACTGG 2 cut(s) 382, 664
BseBI CCWGG 3 cut(s) 95, 460, 609
BseDI CCNNGG 2 cut(s) 437, 608
BseGI GGATG 1 cut(s) 103
BseNI ACTGG 2 cut(s) 382, 664
BseXI GCAGC 2 cut(s) 163, 271
BsgI GTGCAG 1 cut(s) 536
BshFI GGCC 2 cut(s) 125, 442
BsiHKAI GWGCWC 1 cut(s) 343
BsmAI GTCTC 2 cut(s) 9, 633
BsmI GAATGC 1 cut(s) 105
BsnI GGCC 2 cut(s) 125, 442
Bsp1286I GDGCHC 1 cut(s) 343
Bsp143I GATC 2 cut(s) 571, 625
BspANI GGCC 2 cut(s) 125, 442
BspOI GCTAGC 1 cut(s) 543
BspPI GGATC 1 cut(s) 620
BsrI ACTGG 2 cut(s) 382, 664
BssECI CCNNGG 2 cut(s) 437, 608
BssMI GATC 2 cut(s) 571, 625
Bst2UI CCWGG 3 cut(s) 95, 460, 609
Bst4CI ACNGT 2 cut(s) 212, 475
Bst6I CTCTTC 1 cut(s) 507
BstAPI GCANNNNNTGC 1 cut(s) 281
BstC8I GCNNGC 3 cut(s) 103, 541, 648
BstDSI CCRYGG 1 cut(s) 437
BstF5I GGATG 1 cut(s) 103
BstKTI GATC 2 cut(s) 574, 628
BstMAI GTCTC 2 cut(s) 9, 633
BstMBI GATC 2 cut(s) 571, 625
BstMWI GCNNNNNNNGC 2 cut(s) 122, 281
BstNI CCWGG 3 cut(s) 95, 460, 609
BstNSI RCATGY 1 cut(s) 457
BstSCI CCNGG 3 cut(s) 93, 458, 607
BstV1I GCAGC 2 cut(s) 163, 271
BstV2I GAAGAC 1 cut(s) 579
BsuRI GGCC 2 cut(s) 125, 442
BtgI CCRYGG 1 cut(s) 437
BtgZI GCGATG 1 cut(s) 119
BtsCI GGATG 1 cut(s) 103
BtsIMutI CAGTG 2 cut(s) 217, 375
Cac8I GCNNGC 3 cut(s) 103, 541, 648
Cfr13I GGNCC 2 cut(s) 124, 332
Csp6I GTAC 2 cut(s) 353, 363
CviAII CATG 4 cut(s) 17, 320, 454, 482
CviQI GTAC 2 cut(s) 353, 363
DpnI GATC 2 cut(s) 573, 627
DpnII GATC 2 cut(s) 571, 625
EaeI YGGCCR 1 cut(s) 440
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
Eco32I GATATC 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 332
Eco57I CTGAAG 1 cut(s) 615
EcoRII CCWGG 3 cut(s) 93, 458, 607
EcoRV GATATC 1 cut(s) 226
FaeI CATG 4 cut(s) 20, 323, 457, 485
FaiI YATR 8 cut(s) 18, 167, 321, 359, 455, 483, 554, 656
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FatI CATG 4 cut(s) 16, 319, 453, 481
FbaI TGATCA 1 cut(s) 571
Fnu4HI GCNGC 2 cut(s) 152, 285
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 2 cut(s) 152, 285
FspBI CTAG 2 cut(s) 269, 540
GluI GCNGC 2 cut(s) 152, 285
GsuI CTGGAG 1 cut(s) 399
HaeIII GGCC 2 cut(s) 125, 442
Hin1II CATG 4 cut(s) 20, 323, 457, 485
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HindIII AAGCTT 1 cut(s) 426
HinfI GANTC 2 cut(s) 478, 533
HphI GGTGA 5 cut(s) 95, 251, 460, 487, 536
Hpy166II GTNNAC 3 cut(s) 292, 365, 616
Hpy188I TCNGA 3 cut(s) 262, 349, 670
Hpy188III TCNNGA 1 cut(s) 35
Hpy8I GTNNAC 3 cut(s) 292, 365, 616
HpyAV CCTTC 4 cut(s) 72, 383, 515, 639
HpyCH4III ACNGT 2 cut(s) 212, 475
HpyCH4V TGCA 2 cut(s) 517, 658
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 281
Hsp92II CATG 4 cut(s) 20, 323, 457, 485
Ksp22I TGATCA 1 cut(s) 571
Kzo9I GATC 2 cut(s) 571, 625
Lsp1109I GCAGC 2 cut(s) 163, 271
LweI GCATC 1 cut(s) 88
MaeI CTAG 2 cut(s) 269, 540
MaeIII GTNAC 1 cut(s) 465
MalI GATC 2 cut(s) 573, 627
MboI GATC 2 cut(s) 571, 625
MboII GAAGA 7 cut(s) 217, 254, 257, 263, 364, 494, 579
MfeI CAATTG 1 cut(s) 119
MhlI GDGCHC 1 cut(s) 343
MlsI TGGCCA 1 cut(s) 442
MluCI AATT 3 cut(s) 119, 232, 560
MluNI TGGCCA 1 cut(s) 442
MnlI CCTC 5 cut(s) 43, 76, 137, 508, 610
Mox20I TGGCCA 1 cut(s) 442
MroXI GAANNNNTTC 1 cut(s) 276
MscI TGGCCA 1 cut(s) 442
MseI TTAA 3 cut(s) 231, 405, 411
MslI CAYNNNNRTG 1 cut(s) 110
Msp20I TGGCCA 1 cut(s) 442
MspR9I CCNGG 3 cut(s) 95, 460, 609
MunI CAATTG 1 cut(s) 119
Mva1269I GAATGC 1 cut(s) 105
MvaI CCWGG 3 cut(s) 95, 460, 609
MwoI GCNNNNNNNGC 2 cut(s) 122, 281
NdeII GATC 2 cut(s) 571, 625
NheI GCTAGC 1 cut(s) 539
NlaIII CATG 4 cut(s) 20, 323, 457, 485
NspI RCATGY 1 cut(s) 457
PctI GAATGC 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 276
PfeI GAWTC 2 cut(s) 478, 533
PkrI GCNGC 2 cut(s) 153, 286
PshBI ATTAAT 1 cut(s) 231
Psp6I CCWGG 3 cut(s) 93, 458, 607
PspGI CCWGG 3 cut(s) 93, 458, 607
PspPI GGNCC 2 cut(s) 124, 332
RsaI GTAC 2 cut(s) 354, 364
RsaNI GTAC 2 cut(s) 353, 363
RseI CAYNNNNRTG 1 cut(s) 110
SaqAI TTAA 3 cut(s) 231, 405, 411
SatI GCNGC 2 cut(s) 152, 285
Sau3AI GATC 2 cut(s) 571, 625
Sau96I GGNCC 2 cut(s) 124, 332
ScrFI CCNGG 3 cut(s) 95, 460, 609
SduI GDGCHC 1 cut(s) 343
SfaNI GCATC 1 cut(s) 88
SinI GGWCC 1 cut(s) 332
SmiMI CAYNNNNRTG 1 cut(s) 110
Sse9I AATT 3 cut(s) 119, 232, 560
SspMI CTAG 2 cut(s) 269, 540
StyD4I CCNGG 3 cut(s) 93, 458, 607
TaaI ACNGT 2 cut(s) 212, 475
TasI AATT 3 cut(s) 119, 232, 560
TatI WGTACW 2 cut(s) 352, 362
TfiI GAWTC 2 cut(s) 478, 533
Tru1I TTAA 3 cut(s) 231, 405, 411
Tru9I TTAA 3 cut(s) 231, 405, 411
TscAI CASTG 2 cut(s) 217, 382
TseI GCWGC 2 cut(s) 151, 284
TspDTI ATGAA 3 cut(s) 104, 264, 308
TspRI CASTG 2 cut(s) 217, 382
VpaK11BI GGWCC 1 cut(s) 332
VspI ATTAAT 1 cut(s) 231
XceI RCATGY 1 cut(s) 457
XmnI GAANNNNTTC 1 cut(s) 276
XspI CTAG 2 cut(s) 269, 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.