Rh1CG196900

26S proteasome non-atpase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0016431
Physical Location & Seq
Forward (+)
43050136 .. 43057985
7850 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG196900.1

Sequence Viewer

Length: 861 bp
ATGGTCTCAAGGCCAATATGCAGATATGTTGATCCATTGACTATAGGGTCGCATCCAAGAATTTTTGTACTTGGCCTCTCATATGATTTAGTTAGCTTCAGGTGGTTGTTGCTGGTGATTAACAAGGCTTTCGGGTATGCCATGTCGCATTCCAGATTATCCAAATGTTTCCTCGTGGTCGTAACAATCACTTCAAGGAGTGGAAATAACAAAAGATGTGCTCCAAGTCCTTGGGCTGTTGAACAGAATTCAACCACTGGAATGGATGGTGGTGAGATGAACCTGGCTGCTGGCATTCAGGTGGCTCAATTGGCCCTCAAACATCGCCAGAATAAGAAGCAGCAACAAAGGATTATAGTCTTTGCTGGAAGTGTAGCCCTTGATATCATTAATTTTGGTGAAGAAGATGAAGAAAAGTCAGAGAAGCTAGAAGCACTTCTTGCTGCTGTGAACAATAATGACACCAGCCACATTGTTCATGTTTCGGCTGGTCCAAGTGCTCTTTCTGATGTACTCATAAGTACACCTATCTTCACTGGAGATGGAGAAGGTGGGAGTGGGATTAAGATTAAGTCTATTGTTGAAGCTTCAAAGCCGTGGCCATCGGTGAGCATGTCCAGGTGGTTACTCACGGTGAATCATGCCTTACCATTTGCCTCTCTTCAAATGTCTGTGCAGGAAGGTGAAAAAGATTCTGCTAGCGATAAAGATATGAGTAAATTATTGGCTGATCAGTCTTTTGTGTCTTCTATCCTTGCCTCGCTTCCAGGGGTTGACCCAAATGATCCTTCAGTAAGAGACTTGCTTGCTTCTATGCAAAACCAGTCAGAGTTCTATTTGAGAGTAAGAATATTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000502 GO:0001101 GO:0001653 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010015 GO:0010029 GO:0010033 GO:0010053 GO:0010054 GO:0010150 GO:0010498 GO:0016020 GO:0016043 GO:0016049 GO:0019538 GO:0019941 GO:0021700 GO:0022414 GO:0022607 GO:0022622 GO:0023052 GO:0030154 GO:0030163 GO:0031593 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0033993 GO:0034285 GO:0034622 GO:0035966 GO:0038023 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048364 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048468 GO:0048469 GO:0048528 GO:0048580 GO:0048588 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051788 GO:0060089 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080147 GO:0090558 GO:0090567 GO:0090627 GO:0090693 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0099402 GO:0140030 GO:1900140 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369 GO:1905392 GO:1905393 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
UIM VWA_2

Protein Analysis

286

Amino Acids

31.13

Weight (kDa)

6.6

Isoelectric Point (pI)

46.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VWA_2 PF13519 88 - 123 7.8e-06 von Willebrand factor type A domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 46
AclWI GGATC 2 cut(s) 26, 779
AcoI YGGCCR 1 cut(s) 599
AcsI RAATTY 2 cut(s) 60, 247
AcuI CTGAAG 2 cut(s) 82, 774
AfaI GTAC 3 cut(s) 69, 513, 523
AgsI TTSAA 6 cut(s) 195, 242, 252, 584, 591, 665
AjnI CCWGG 3 cut(s) 282, 617, 766
AjuI GAANNNNNNNTTGG 4 cut(s) 487, 519, 772, 804
AluBI AGCT 3 cut(s) 96, 427, 587
AluI AGCT 3 cut(s) 96, 427, 587
Alw21I GWGCWC 2 cut(s) 223, 502
Alw26I GTCTC 2 cut(s) 10, 792
AlwI GGATC 2 cut(s) 26, 779
AoxI GGCC 4 cut(s) 11, 73, 312, 599
ApeKI GCWGC 3 cut(s) 287, 340, 443
ApoI RAATTY 2 cut(s) 60, 247
AseI ATTAAT 1 cut(s) 390
Asp700I GAANNNNTTC 1 cut(s) 435
AspS9I GGNCC 2 cut(s) 313, 491
AsuHPI GGTGA 6 cut(s) 127, 284, 410, 619, 646, 695
AsuNHI GCTAGC 1 cut(s) 698
AvaII GGWCC 1 cut(s) 491
BalI TGGCCA 1 cut(s) 601
BauI CACGAG 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 738
Bbv12I GWGCWC 2 cut(s) 223, 502
BbvI GCAGC 3 cut(s) 274, 352, 430
BccI CCATC 3 cut(s) 260, 536, 610
BceAI ACGGC 1 cut(s) 580
BciT130I CCWGG 3 cut(s) 284, 619, 768
BclI TGATCA 1 cut(s) 730
BcoDI GTCTC 2 cut(s) 10, 792
BfaI CTAG 2 cut(s) 428, 699
BfmI CTRYAG 1 cut(s) 42
BisI GCNGC 3 cut(s) 288, 341, 444
BlsI GCNGC 3 cut(s) 289, 342, 445
Bme1390I CCNGG 3 cut(s) 284, 619, 768
Bme18I GGWCC 1 cut(s) 491
BmgT120I GGNCC 2 cut(s) 313, 491
BmrFI CCNGG 3 cut(s) 284, 619, 768
BmsI GCATC 1 cut(s) 61
BmtI GCTAGC 1 cut(s) 702
BpiI GAAGAC 1 cut(s) 738
BpmI CTGGAG 1 cut(s) 558
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 3 cut(s) 230, 596, 767
Bse1I ACTGG 3 cut(s) 262, 541, 823
BseBI CCWGG 3 cut(s) 284, 619, 768
BseDI CCNNGG 3 cut(s) 230, 596, 767
BseGI GGATG 2 cut(s) 52, 271
BseNI ACTGG 3 cut(s) 262, 541, 823
BseXI GCAGC 3 cut(s) 274, 352, 430
BsgI GTGCAG 1 cut(s) 695
BshFI GGCC 4 cut(s) 13, 75, 314, 601
BsiHKAI GWGCWC 2 cut(s) 223, 502
BsmAI GTCTC 2 cut(s) 10, 792
BsmI GAATGC 2 cut(s) 148, 294
BsnI GGCC 4 cut(s) 13, 75, 314, 601
Bso31I GGTCTC 1 cut(s) 10
Bsp1286I GDGCHC 2 cut(s) 223, 502
Bsp143I GATC 3 cut(s) 31, 730, 784
BspANI GGCC 4 cut(s) 13, 75, 314, 601
BspOI GCTAGC 1 cut(s) 702
BspPI GGATC 2 cut(s) 26, 779
BspTNI GGTCTC 1 cut(s) 10
BsrI ACTGG 3 cut(s) 262, 541, 823
BssECI CCNNGG 3 cut(s) 230, 596, 767
BssMI GATC 3 cut(s) 31, 730, 784
BssSI CACGAG 1 cut(s) 173
BssT1I CCWWGG 1 cut(s) 230
Bst2BI CACGAG 1 cut(s) 173
Bst2UI CCWGG 3 cut(s) 284, 619, 768
Bst4CI ACNGT 1 cut(s) 634
Bst6I CTCTTC 1 cut(s) 666
BstAPI GCANNNNNTGC 1 cut(s) 440
BstC8I GCNNGC 3 cut(s) 292, 700, 807
BstDSI CCRYGG 1 cut(s) 596
BstF5I GGATG 2 cut(s) 52, 271
BstKTI GATC 3 cut(s) 34, 733, 787
BstMAI GTCTC 2 cut(s) 10, 792
BstMBI GATC 3 cut(s) 31, 730, 784
BstMWI GCNNNNNNNGC 2 cut(s) 311, 440
BstNI CCWGG 3 cut(s) 284, 619, 768
BstNSI RCATGY 1 cut(s) 616
BstSCI CCNGG 3 cut(s) 282, 617, 766
BstSFI CTRYAG 1 cut(s) 42
BstV1I GCAGC 3 cut(s) 274, 352, 430
BstV2I GAAGAC 1 cut(s) 738
BstXI CCANNNNNNTGG 2 cut(s) 231, 262
BsuRI GGCC 4 cut(s) 13, 75, 314, 601
BtgI CCRYGG 1 cut(s) 596
BtgZI GCGATG 1 cut(s) 308
BtsCI GGATG 2 cut(s) 52, 271
BtsIMutI CAGTG 2 cut(s) 255, 534
Cac8I GCNNGC 3 cut(s) 292, 700, 807
Cfr13I GGNCC 2 cut(s) 313, 491
Csp6I GTAC 3 cut(s) 68, 512, 522
CviAII CATG 4 cut(s) 142, 479, 613, 641
CviQI GTAC 3 cut(s) 68, 512, 522
DpnI GATC 3 cut(s) 33, 732, 786
DpnII GATC 3 cut(s) 31, 730, 784
DrdI GACNNNNNNGTC 1 cut(s) 46
DseDI GACNNNNNNGTC 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 599
Eam1104I CTCTTC 1 cut(s) 666
EarI CTCTTC 1 cut(s) 666
Eco130I CCWWGG 1 cut(s) 230
Eco31I GGTCTC 1 cut(s) 10
Eco32I GATATC 1 cut(s) 385
Eco47I GGWCC 1 cut(s) 491
Eco57I CTGAAG 2 cut(s) 82, 774
EcoRI GAATTC 1 cut(s) 247
EcoRII CCWGG 3 cut(s) 282, 617, 766
EcoRV GATATC 1 cut(s) 385
EcoT14I CCWWGG 1 cut(s) 230
ErhI CCWWGG 1 cut(s) 230
FaeI CATG 4 cut(s) 145, 482, 616, 644
FalI AAGNNNNNCTT 2 cut(s) 423, 455
FatI CATG 4 cut(s) 141, 478, 612, 640
FauNDI CATATG 1 cut(s) 82
FbaI TGATCA 1 cut(s) 730
Fnu4HI GCNGC 3 cut(s) 288, 341, 444
FokI GGATG 2 cut(s) 39, 278
Fsp4HI GCNGC 3 cut(s) 288, 341, 444
FspBI CTAG 2 cut(s) 428, 699
GluI GCNGC 3 cut(s) 288, 341, 444
GsuI CTGGAG 1 cut(s) 558
HaeIII GGCC 4 cut(s) 13, 75, 314, 601
Hin1II CATG 4 cut(s) 145, 482, 616, 644
HincII GTYRAC 1 cut(s) 775
HindII GTYRAC 1 cut(s) 775
HindIII AAGCTT 1 cut(s) 585
HinfI GANTC 2 cut(s) 637, 692
HphI GGTGA 6 cut(s) 127, 284, 410, 619, 646, 695
Hpy166II GTNNAC 3 cut(s) 451, 524, 775
Hpy188I TCNGA 3 cut(s) 421, 508, 829
Hpy188III TCNNGA 1 cut(s) 153
Hpy8I GTNNAC 3 cut(s) 451, 524, 775
HpyAV CCTTC 3 cut(s) 542, 674, 798
HpyCH4III ACNGT 1 cut(s) 634
HpyCH4V TGCA 3 cut(s) 21, 676, 817
HpyF10VI GCNNNNNNNGC 2 cut(s) 311, 440
Hsp92II CATG 4 cut(s) 145, 482, 616, 644
Ksp22I TGATCA 1 cut(s) 730
Kzo9I GATC 3 cut(s) 31, 730, 784
LmnI GCTCC 1 cut(s) 226
Lsp1109I GCAGC 3 cut(s) 274, 352, 430
LweI GCATC 1 cut(s) 61
MaeI CTAG 2 cut(s) 428, 699
MaeIII GTNAC 2 cut(s) 181, 624
MalI GATC 3 cut(s) 33, 732, 786
MboI GATC 3 cut(s) 31, 730, 784
MboII GAAGA 6 cut(s) 413, 416, 422, 523, 653, 738
MfeI CAATTG 1 cut(s) 308
MhlI GDGCHC 2 cut(s) 223, 502
MlsI TGGCCA 1 cut(s) 601
MluCI AATT 5 cut(s) 60, 247, 308, 391, 719
MluNI TGGCCA 1 cut(s) 601
MnlI CCTC 5 cut(s) 86, 182, 326, 667, 769
Mox20I TGGCCA 1 cut(s) 601
MroXI GAANNNNTTC 1 cut(s) 435
MscI TGGCCA 1 cut(s) 601
MseI TTAA 4 cut(s) 120, 390, 564, 570
MslI CAYNNNNRTG 2 cut(s) 260, 299
Msp20I TGGCCA 1 cut(s) 601
MspR9I CCNGG 3 cut(s) 284, 619, 768
MunI CAATTG 1 cut(s) 308
Mva1269I GAATGC 2 cut(s) 148, 294
MvaI CCWGG 3 cut(s) 284, 619, 768
MwoI GCNNNNNNNGC 2 cut(s) 311, 440
NdeI CATATG 1 cut(s) 82
NdeII GATC 3 cut(s) 31, 730, 784
NheI GCTAGC 1 cut(s) 698
NlaIII CATG 4 cut(s) 145, 482, 616, 644
NspI RCATGY 1 cut(s) 616
PctI GAATGC 2 cut(s) 148, 294
PdmI GAANNNNTTC 1 cut(s) 435
PfeI GAWTC 2 cut(s) 637, 692
PkrI GCNGC 3 cut(s) 289, 342, 445
PshBI ATTAAT 1 cut(s) 390
Psp6I CCWGG 3 cut(s) 282, 617, 766
PspGI CCWGG 3 cut(s) 282, 617, 766
PspPI GGNCC 2 cut(s) 313, 491
RsaI GTAC 3 cut(s) 69, 513, 523
RsaNI GTAC 3 cut(s) 68, 512, 522
RseI CAYNNNNRTG 2 cut(s) 260, 299
SaqAI TTAA 4 cut(s) 120, 390, 564, 570
SatI GCNGC 3 cut(s) 288, 341, 444
Sau3AI GATC 3 cut(s) 31, 730, 784
Sau96I GGNCC 2 cut(s) 313, 491
ScrFI CCNGG 3 cut(s) 284, 619, 768
SduI GDGCHC 2 cut(s) 223, 502
SfaNI GCATC 1 cut(s) 61
SfcI CTRYAG 1 cut(s) 42
SinI GGWCC 1 cut(s) 491
SmiMI CAYNNNNRTG 2 cut(s) 260, 299
SmlI CTYRAG 1 cut(s) 7
SmoI CTYRAG 1 cut(s) 7
Sse9I AATT 5 cut(s) 60, 247, 308, 391, 719
SspI AATATT 1 cut(s) 852
SspMI CTAG 2 cut(s) 428, 699
StyD4I CCNGG 3 cut(s) 282, 617, 766
StyI CCWWGG 1 cut(s) 230
TaaI ACNGT 1 cut(s) 634
TasI AATT 5 cut(s) 60, 247, 308, 391, 719
TatI WGTACW 3 cut(s) 67, 511, 521
TfiI GAWTC 2 cut(s) 637, 692
Tru1I TTAA 4 cut(s) 120, 390, 564, 570
Tru9I TTAA 4 cut(s) 120, 390, 564, 570
TscAI CASTG 2 cut(s) 262, 541
TseI GCWGC 3 cut(s) 287, 340, 443
TspDTI ATGAA 3 cut(s) 293, 423, 467
TspRI CASTG 2 cut(s) 262, 541
VpaK11BI GGWCC 1 cut(s) 491
VspI ATTAAT 1 cut(s) 390
XapI RAATTY 2 cut(s) 60, 247
XceI RCATGY 1 cut(s) 616
XmnI GAANNNNTTC 1 cut(s) 435
XspI CTAG 2 cut(s) 428, 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.