RchiOBHm_Chr1g0349411

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide- sensitive factor) attachment protein receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0011092
Physical Location & Seq
Reverse (-)
42542802 .. 42548000
5199 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 723 bp
ATGACGGATTCGAGTCTGGAGCTACAGGAATCGGGGTGGGAGGAGCTGAGGAGAGAGGCCCGCAAGATCGAGGGAGATCTTGACGTCAAGCTTTCTTCTTATGCTAAACTCGGAGCTCGGTTCACACAAGGAGGAGGTTATGTGGAATCTGGGTCACCACCTGTTGGGTCCAGCAGGTCATGGAAGTCTATGGAAATGGAAATCCAGTCTTTGCTCGAGAAGCTATTGGATATAAATGATTCAATGAGCCGATGTGCTGCTTCTGCTACACCAGCTACTTCTGTTACTCAGAAGCTAGCAAGGCATAGAGACATACTTCATGAGTTTACTCAGGAGTTCAGACGAATCAAAGGGAACATAAATTCATTGAGGGAACATGCGGAGCTTCTAACTTCTGTCAGGGATGACATTAGCGAGTACAAGGCATCTGGGAGTATGTCTCCAAGAATGCAAATACTACGGGAGAGAGCTGCTATCCATGGAAGTGTATCTCATATAGATGAGGTGATCAGTCAGGCTCAAACAACAAGGGCAGTCTTGGGCTCTCAAAGGGCGTTGTTTGGAGATGTTCAAGGCAAAGTGAAGAATCTAAGTGACAAGTTCCCTGTTATCCGTGGCCTACTTGGTTCAATTAAAAGGAGGCGATCCAGAGACACAATTATTCTGTCTGCAGTCATTGCAGCTTGTACCTTGTTTCTTATCATCTACTGGCTTTCAAAATAG

Protein Analysis

240

Amino Acids

26.75

Weight (kDa)

9.41

Isoelectric Point (pI)

61.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
V-SNARE_C PF12352 151 - 215 1.6e-16 Snare region anchored in the vesicle membrane C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45200 AT2G45200
fragaria_vesca FvH4_7g11270
malus_domestica MD02G1205800.v1.1 MD07G1117300.v1.1
prunus_persica Prupe.2G140500_v2.0.a1 Prupe.2G140500_v2.0.a1
pyrus_communis pycom02g17040 pycom07g10740
rosa_chinensis RchiOBHm_Chr1g0349411
rosa_laevigata RLG00000028551
rosa_multiflora Rmu_sc0002495.1_g000004
rosa_roxburghii Rroxscaffold_4G00305560
rosa_rugosa Rorug01G0203500 Rorug01G0203600.1
rosa_samantha Rh1AG220900 Rh1BG187000 Rh1CG205900 Rh1DG216300
rosa_wichuraiana Rw1G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 87
Acc36I ACCTGC 1 cut(s) 165
AccB7I CCANNNNNTGG 1 cut(s) 164
AciI CCGC 2 cut(s) 61, 380
AclWI GGATC 1 cut(s) 639
AcsI RAATTY 1 cut(s) 361
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 2 cut(s) 419, 688
AfiI CCNNNNNNNGG 1 cut(s) 164
AgsI TTSAA 4 cut(s) 243, 572, 630, 717
Alw21I GWGCWC 1 cut(s) 118
Alw26I GTCTC 3 cut(s) 303, 444, 645
AlwI GGATC 1 cut(s) 639
Ama87I CYCGRG 1 cut(s) 215
AoxI GGCC 2 cut(s) 57, 616
ApeKI GCWGC 3 cut(s) 257, 470, 680
ApoI RAATTY 1 cut(s) 361
AspS9I GGNCC 2 cut(s) 58, 168
AsuHPI GGTGA 2 cut(s) 147, 517
AsuNHI GCTAGC 1 cut(s) 295
AvaI CYCGRG 1 cut(s) 215
AvaII GGWCC 1 cut(s) 168
BanII GRGCYC 2 cut(s) 118, 545
Bbv12I GWGCWC 1 cut(s) 118
BbvCI CCTCAGC 1 cut(s) 47
BbvI GCAGC 3 cut(s) 244, 457, 692
BclI TGATCA 1 cut(s) 507
BcoDI GTCTC 3 cut(s) 303, 444, 645
BfaI CTAG 1 cut(s) 296
BfmI CTRYAG 2 cut(s) 23, 669
BfuAI ACCTGC 1 cut(s) 165
BglII AGATCT 1 cut(s) 76
BisI GCNGC 3 cut(s) 258, 471, 681
BlsI GCNGC 3 cut(s) 259, 472, 682
Bme18I GGWCC 1 cut(s) 168
BmeT110I CYCGRG 1 cut(s) 215
BmgT120I GGNCC 2 cut(s) 58, 168
BmiI GGNNCC 1 cut(s) 169
BmsI GCATC 1 cut(s) 434
BmtI GCTAGC 1 cut(s) 299
BplI GAGNNNNNCTC 2 cut(s) 424, 456
BpmI CTGGAG 1 cut(s) 38
Bpu10I CCTNAGC 1 cut(s) 47
BsaHI GRCGYC 1 cut(s) 84
BsaJI CCNNGG 2 cut(s) 478, 613
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse1I ACTGG 2 cut(s) 205, 713
Bse3DI GCAATG 1 cut(s) 675
BseDI CCNNGG 2 cut(s) 478, 613
BseGI GGATG 1 cut(s) 409
BseLI CCNNNNNNNGG 1 cut(s) 164
BseMI GCAATG 1 cut(s) 675
BseMII CTCAG 3 cut(s) 38, 302, 344
BseNI ACTGG 2 cut(s) 205, 713
BseRI GAGGAG 3 cut(s) 56, 64, 147
BseXI GCAGC 3 cut(s) 244, 457, 692
BshFI GGCC 2 cut(s) 59, 618
BsiHKAI GWGCWC 1 cut(s) 118
BsiHKCI CYCGRG 1 cut(s) 215
BslI CCNNNNNNNGG 1 cut(s) 164
BsmAI GTCTC 3 cut(s) 303, 444, 645
BsmI GAATGC 1 cut(s) 453
BsnI GGCC 2 cut(s) 59, 618
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 2 cut(s) 118, 545
Bsp143I GATC 4 cut(s) 66, 76, 507, 644
Bsp19I CCATGG 1 cut(s) 478
BspACI CCGC 2 cut(s) 61, 380
BspANI GGCC 2 cut(s) 59, 618
BspCNI CTCAG 3 cut(s) 39, 301, 343
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 1 cut(s) 169
BspMAI CTGCAG 1 cut(s) 673
BspMI ACCTGC 1 cut(s) 165
BspOI GCTAGC 1 cut(s) 299
BspPI GGATC 1 cut(s) 639
BsrDI GCAATG 1 cut(s) 675
BsrI ACTGG 2 cut(s) 205, 713
BssECI CCNNGG 2 cut(s) 478, 613
BssMI GATC 4 cut(s) 66, 76, 507, 644
BssNI GRCGYC 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 478
BstACI GRCGYC 1 cut(s) 84
BstAPI GCANNNNNTGC 1 cut(s) 677
BstC8I GCNNGC 2 cut(s) 61, 297
BstDEI CTNAG 4 cut(s) 47, 288, 330, 590
BstDSI CCRYGG 2 cut(s) 478, 613
BstEII GGTNACC 1 cut(s) 153
BstF5I GGATG 1 cut(s) 409
BstKTI GATC 4 cut(s) 69, 79, 510, 647
BstMAI GTCTC 3 cut(s) 303, 444, 645
BstMBI GATC 4 cut(s) 66, 76, 507, 644
BstMWI GCNNNNNNNGC 5 cut(s) 220, 263, 272, 301, 677
BstNSI RCATGY 1 cut(s) 380
BstPI GGTNACC 1 cut(s) 153
BstSFI CTRYAG 2 cut(s) 23, 669
BstV1I GCAGC 3 cut(s) 244, 457, 692
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BsuRI GGCC 2 cut(s) 59, 618
BtgI CCRYGG 2 cut(s) 478, 613
BtsCI GGATG 1 cut(s) 409
BveI ACCTGC 1 cut(s) 165
Cac8I GCNNGC 2 cut(s) 61, 297
CciI TCATGA 1 cut(s) 319
Cfr13I GGNCC 2 cut(s) 58, 168
Csp6I GTAC 2 cut(s) 418, 687
CviAII CATG 4 cut(s) 180, 320, 377, 479
CviQI GTAC 2 cut(s) 418, 687
DdeI CTNAG 4 cut(s) 47, 288, 330, 590
DpnI GATC 4 cut(s) 68, 78, 509, 646
DpnII GATC 4 cut(s) 66, 76, 507, 644
Ecl136II GAGCTC 1 cut(s) 116
Eco130I CCWWGG 1 cut(s) 478
Eco24I GRGCYC 2 cut(s) 118, 545
Eco47I GGWCC 1 cut(s) 168
Eco53kI GAGCTC 1 cut(s) 116
Eco88I CYCGRG 1 cut(s) 215
Eco91I GGTNACC 1 cut(s) 153
EcoICRI GAGCTC 1 cut(s) 116
EcoO65I GGTNACC 1 cut(s) 153
EcoT14I CCWWGG 1 cut(s) 478
EcoT38I GRGCYC 2 cut(s) 118, 545
ErhI CCWWGG 1 cut(s) 478
FaeI CATG 4 cut(s) 183, 323, 380, 482
FatI CATG 4 cut(s) 179, 319, 376, 478
FauI CCCGC 1 cut(s) 68
FbaI TGATCA 1 cut(s) 507
Fnu4HI GCNGC 3 cut(s) 258, 471, 681
FokI GGATG 1 cut(s) 416
FriOI GRGCYC 2 cut(s) 118, 545
Fsp4HI GCNGC 3 cut(s) 258, 471, 681
FspBI CTAG 1 cut(s) 296
GluI GCNGC 3 cut(s) 258, 471, 681
GsuI CTGGAG 1 cut(s) 38
HaeIII GGCC 2 cut(s) 59, 618
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 4 cut(s) 183, 323, 380, 482
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 7 cut(s) 8, 13, 29, 146, 239, 345, 586
HphI GGTGA 2 cut(s) 147, 517
Hpy166II GTNNAC 2 cut(s) 123, 327
Hpy188I TCNGA 3 cut(s) 113, 291, 341
Hpy188III TCNNGA 6 cut(s) 17, 80, 217, 320, 332, 648
Hpy8I GTNNAC 2 cut(s) 123, 327
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 3 cut(s) 451, 671, 680
HpyF10VI GCNNNNNNNGC 5 cut(s) 220, 263, 272, 301, 677
HpyF3I CTNAG 4 cut(s) 47, 288, 330, 590
HpySE526I ACGT 1 cut(s) 84
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 4 cut(s) 183, 323, 380, 482
Ksp22I TGATCA 1 cut(s) 507
Kzo9I GATC 4 cut(s) 66, 76, 507, 644
LmnI GCTCC 4 cut(s) 19, 43, 113, 382
Lsp1109I GCAGC 3 cut(s) 244, 457, 692
LweI GCATC 1 cut(s) 434
MaeI CTAG 1 cut(s) 296
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 3 cut(s) 153, 283, 593
MalI GATC 4 cut(s) 68, 78, 509, 646
MboI GATC 4 cut(s) 66, 76, 507, 644
MboII GAAGA 2 cut(s) 87, 595
MflI RGATCY 1 cut(s) 76
MhlI GDGCHC 2 cut(s) 118, 545
MluCI AATT 3 cut(s) 361, 630, 657
MlyI GAGTC 1 cut(s) 22
MnlI CCTC 9 cut(s) 34, 42, 49, 64, 125, 128, 363, 496, 633
MseI TTAA 1 cut(s) 633
MslI CAYNNNNRTG 2 cut(s) 483, 498
Mva1269I GAATGC 1 cut(s) 453
MwoI GCNNNNNNNGC 5 cut(s) 220, 263, 272, 301, 677
NcoI CCATGG 1 cut(s) 478
NdeII GATC 4 cut(s) 66, 76, 507, 644
NheI GCTAGC 1 cut(s) 295
NlaIII CATG 4 cut(s) 183, 323, 380, 482
NlaIV GGNNCC 1 cut(s) 169
NmuCI GTSAC 2 cut(s) 153, 593
NspI RCATGY 1 cut(s) 380
PaeR7I CTCGAG 1 cut(s) 215
PagI TCATGA 1 cut(s) 319
PctI GAATGC 1 cut(s) 453
PfeI GAWTC 6 cut(s) 8, 29, 146, 239, 345, 586
PflMI CCANNNNNTGG 1 cut(s) 164
PkrI GCNGC 3 cut(s) 259, 472, 682
PleI GAGTC 1 cut(s) 21
PpsI GAGTC 1 cut(s) 21
Psp124BI GAGCTC 1 cut(s) 118
PspEI GGTNACC 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 169
PspPI GGNCC 2 cut(s) 58, 168
PstI CTGCAG 1 cut(s) 673
PsuI RGATCY 1 cut(s) 76
RsaI GTAC 2 cut(s) 419, 688
RsaNI GTAC 2 cut(s) 418, 687
RseI CAYNNNNRTG 2 cut(s) 483, 498
SacI GAGCTC 1 cut(s) 118
SaqAI TTAA 1 cut(s) 633
SatI GCNGC 3 cut(s) 258, 471, 681
Sau3AI GATC 4 cut(s) 66, 76, 507, 644
Sau96I GGNCC 2 cut(s) 58, 168
SchI GAGTC 1 cut(s) 22
SduI GDGCHC 2 cut(s) 118, 545
SfaNI GCATC 1 cut(s) 434
SfcI CTRYAG 2 cut(s) 23, 669
Sfr274I CTCGAG 1 cut(s) 215
SinI GGWCC 1 cut(s) 168
SlaI CTCGAG 1 cut(s) 215
SmiMI CAYNNNNRTG 2 cut(s) 483, 498
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 3 cut(s) 361, 630, 657
SsiI CCGC 2 cut(s) 61, 380
SspMI CTAG 1 cut(s) 296
SstI GAGCTC 1 cut(s) 118
StyI CCWWGG 1 cut(s) 478
TaiI ACGT 1 cut(s) 87
TaqI TCGA 3 cut(s) 11, 69, 216
TasI AATT 3 cut(s) 361, 630, 657
TatI WGTACW 1 cut(s) 417
TfiI GAWTC 6 cut(s) 8, 29, 146, 239, 345, 586
Tru1I TTAA 1 cut(s) 633
Tru9I TTAA 1 cut(s) 633
TseFI GTSAC 2 cut(s) 153, 593
TseI GCWGC 3 cut(s) 257, 470, 680
Tsp45I GTSAC 2 cut(s) 153, 593
TspDTI ATGAA 2 cut(s) 308, 354
TspGWI ACGGA 2 cut(s) 20, 602
Van91I CCANNNNNTGG 1 cut(s) 164
VpaK11BI GGWCC 1 cut(s) 168
XapI RAATTY 1 cut(s) 361
XceI RCATGY 1 cut(s) 380
XhoI CTCGAG 1 cut(s) 215
XspI CTAG 1 cut(s) 296
ZraI GACGTC 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.