Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007964

Physical Location & Seq

Genomic Coordinates Forward (+)

42881234 .. 42882430

Gene Structure 1197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCCCTCTCTTCCGCATTTTGGCGCCTAAATCTCCTCTCAAAACCCTCAGTTTCTCTCAGAGCTCTAAAACCCTTCAAGCCCAAACCAAGGCCCATGTCCTCGATTCCCATTTCTTCTAAATCAAATTCCTCCAACTTCTCCGCATCAAAGAATCCAACTTCTCTAGACCCAAAAACTCGAACTCCGTATCCCCAACATGATCTTATTGTTCTGGGCATCGAAACCAGCTGCGACTACACCGCCGCCGCCGCCGAGAAAAGCAACGGTGAAATTCTCAGCCAAGTTATTTCTTCTCAGGCAGATTTGCTTGCTCAATATGGAGGTGTTGCTCCCAAAATGGCAGAAGAAGCGCACTTGCAAGTGATTGACCGGACACCATCCTTATATTTAAGTTGTTTTTGCTACGCTTGCTTTGCCAGTCATCATTTATTATTGACGTCAGTTTTGGATGACTTAGTTATTTCATATTATCACTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000408 GO:0002949 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016020 GO:0016070 GO:0019866 GO:0022414 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0070525 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M22

Protein Analysis

160

Amino Acids

17.52

Weight (kDa)

8.34

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45270
fragaria_vesca	FvH4_7g11490 FvH4_7g11490 FvH4_7g11490
malus_domestica	MD02G1206900.v1.1
prunus_persica	Prupe.2G143300_v2.0.a1
pyrus_communis	pycom02g16910
rosa_chinensis	RchiOBHm_Chr1g0349791 RchiOBHm_Chr1g0349801 RchiOBHm_Chr1g0349851 RchiOBHm_Chr1g0349931
rosa_laevigata	RLG00000028515
rosa_multiflora	Rmu_sc0000778.1_g000003 Rmu_sc0005220.1_g000015 Rmu_sc0007377.1_g000005
rosa_roxburghii	Rroxscaffold_4G00305270
rosa_rugosa	Rorug01G0207000 Rorug01G0207000
rosa_samantha	Rh1AG223600 Rh1BG190800 Rh1CG208400
rosa_wichuraiana	Rw0G007620 Rw1G019050 Rw1G019060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	443
AccB1I	GGYRCC	1 cut(s)	24
AciI	CCGC	6 cut(s)	15, 144, 243, 246, 249, 252
AcsI	RAATTY	2 cut(s)	127, 273
AcyI	GRCGYC	2 cut(s)	25, 440
AfiI	CCNNNNNNNGG	2 cut(s)	21, 90
AgsI	TTSAA	1 cut(s)	79
AloI	GAACNNNNNNTCC	2 cut(s)	175, 207
AluBI	AGCT	2 cut(s)	65, 231
AluI	AGCT	2 cut(s)	65, 231
Alw21I	GWGCWC	1 cut(s)	67
AoxI	GGCC	2 cut(s)	3, 92
ApeKI	GCWGC	1 cut(s)	231
ApoI	RAATTY	2 cut(s)	127, 273
ArsI	GACNNNNNNTTYG	2 cut(s)	430, 462
AspLEI	GCGC	2 cut(s)	27, 355
AspS9I	GGNCC	2 cut(s)	4, 93
AsuHPI	GGTGA	1 cut(s)	281
BanI	GGYRCC	1 cut(s)	24
BanII	GRGCYC	1 cut(s)	67
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	218
BccI	CCATC	1 cut(s)	388
BciVI	GTATCC	1 cut(s)	201
BfaI	CTAG	1 cut(s)	167
BfoI	RGCGCY	1 cut(s)	28
BfuI	GTATCC	1 cut(s)	201
BisI	GCNGC	4 cut(s)	232, 246, 249, 252
BlsI	GCNGC	4 cut(s)	233, 247, 250, 253
BmgT120I	GGNCC	2 cut(s)	4, 93
BmiI	GGNNCC	1 cut(s)	26
BmsI	GCATC	2 cut(s)	155, 228
BsaHI	GRCGYC	2 cut(s)	25, 440
BsaJI	CCNNGG	1 cut(s)	89
BsaWI	WCCGGW	1 cut(s)	372
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 90
Bse1I	ACTGG	1 cut(s)	420
BseDI	CCNNGG	1 cut(s)	89
BseGI	GGATG	2 cut(s)	380, 457
BseLI	CCNNNNNNNGG	2 cut(s)	21, 90
BseMII	CTCAG	4 cut(s)	63, 73, 292, 311
BseNI	ACTGG	1 cut(s)	420
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	218
BshFI	GGCC	2 cut(s)	5, 94
BshNI	GGYRCC	1 cut(s)	24
BsiHKAI	GWGCWC	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	373
BslI	CCNNNNNNNGG	2 cut(s)	21, 90
BsnI	GGCC	2 cut(s)	5, 94
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	1 cut(s)	202
BspACI	CCGC	6 cut(s)	15, 144, 243, 246, 249, 252
BspANI	GGCC	2 cut(s)	5, 94
BspCNI	CTCAG	4 cut(s)	62, 72, 291, 310
BspLI	GGNNCC	1 cut(s)	26
BspT107I	GGYRCC	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	420
BssECI	CCNNGG	1 cut(s)	89
BssMI	GATC	1 cut(s)	202
BssNI	GRCGYC	2 cut(s)	25, 440
BssT1I	CCWWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	269
Bst6I	CTCTTC	1 cut(s)	16
BstACI	GRCGYC	2 cut(s)	25, 440
BstC8I	GCNNGC	2 cut(s)	312, 412
BstDEI	CTNAG	5 cut(s)	49, 59, 278, 297, 457
BstF5I	GGATG	2 cut(s)	380, 457
BstH2I	RGCGCY	1 cut(s)	28
BstHHI	GCGC	2 cut(s)	27, 355
BstKTI	GATC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	4 cut(s)	251, 350, 411, 416
BstV1I	GCAGC	1 cut(s)	218
BsuI	GTATCC	1 cut(s)	201
BsuRI	GGCC	2 cut(s)	5, 94
BtsCI	GGATG	2 cut(s)	380, 457
Cac8I	GCNNGC	2 cut(s)	312, 412
CfoI	GCGC	2 cut(s)	27, 355
Cfr13I	GGNCC	2 cut(s)	4, 93
CviAII	CATG	2 cut(s)	97, 200
CviJI	RGCY	6 cut(s)	5, 65, 82, 94, 231, 282
CviKI_1	RGCY	6 cut(s)	5, 65, 82, 94, 231, 282
DdeI	CTNAG	5 cut(s)	49, 59, 278, 297, 457
DinI	GGCGCC	1 cut(s)	26
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Ecl136II	GAGCTC	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	89
Eco24I	GRGCYC	1 cut(s)	67
Eco53kI	GAGCTC	1 cut(s)	65
EcoICRI	GAGCTC	1 cut(s)	65
EcoT14I	CCWWGG	1 cut(s)	89
EcoT38I	GRGCYC	1 cut(s)	67
EgeI	GGCGCC	1 cut(s)	26
EheI	GGCGCC	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	89
FaeI	CATG	2 cut(s)	100, 203
FaiI	YATR	5 cut(s)	98, 201, 321, 388, 469
FatI	CATG	2 cut(s)	96, 199
Fnu4HI	GCNGC	4 cut(s)	232, 246, 249, 252
FokI	GGATG	2 cut(s)	367, 464
FriOI	GRGCYC	1 cut(s)	67
Fsp4HI	GCNGC	4 cut(s)	232, 246, 249, 252
FspBI	CTAG	1 cut(s)	167
GlaI	GCGC	2 cut(s)	26, 354
GluI	GCNGC	4 cut(s)	232, 246, 249, 252
HaeII	RGCGCY	1 cut(s)	28
HaeIII	GGCC	2 cut(s)	5, 94
HapII	CCGG	1 cut(s)	373
HhaI	GCGC	2 cut(s)	27, 355
Hin1I	GRCGYC	2 cut(s)	25, 440
Hin1II	CATG	2 cut(s)	100, 203
Hin6I	GCGC	2 cut(s)	25, 353
HinP1I	GCGC	2 cut(s)	25, 353
HinfI	GANTC	2 cut(s)	106, 154
HpaII	CCGG	1 cut(s)	373
HphI	GGTGA	1 cut(s)	281
Hpy188I	TCNGA	1 cut(s)	62
Hpy188III	TCNNGA	1 cut(s)	167
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	1 cut(s)	269
HpyCH4IV	ACGT	1 cut(s)	440
HpyCH4V	TGCA	1 cut(s)	361
HpyF10VI	GCNNNNNNNGC	4 cut(s)	251, 350, 411, 416
HpyF3I	CTNAG	5 cut(s)	49, 59, 278, 297, 457
HpySE526I	ACGT	1 cut(s)	440
Hsp92I	GRCGYC	2 cut(s)	25, 440
Hsp92II	CATG	2 cut(s)	100, 203
HspAI	GCGC	2 cut(s)	25, 353
KasI	GGCGCC	1 cut(s)	24
Kzo9I	GATC	1 cut(s)	202
LmnI	GCTCC	1 cut(s)	337
LpnPI	CCDG	5 cut(s)	200, 241, 284, 386, 433
Lsp1109I	GCAGC	1 cut(s)	218
LweI	GCATC	2 cut(s)	155, 228
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	1 cut(s)	440
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	4 cut(s)	3, 108, 285, 359
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	2 cut(s)	127, 273
Mly113I	GGCGCC	1 cut(s)	25
MmeI	TCCRAC	2 cut(s)	159, 182
MnlI	CCTC	6 cut(s)	17, 47, 58, 112, 142, 317
MseI	TTAA	2 cut(s)	392, 481
MspA1I	CMGCKG	1 cut(s)	231
MspI	CCGG	1 cut(s)	373
MwoI	GCNNNNNNNGC	4 cut(s)	251, 350, 411, 416
NarI	GGCGCC	1 cut(s)	25
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	2 cut(s)	100, 203
NlaIV	GGNNCC	1 cut(s)	26
NmeAIII	GCCGAG	1 cut(s)	280
PfeI	GAWTC	2 cut(s)	106, 154
PkrI	GCNGC	4 cut(s)	233, 247, 250, 253
PluTI	GGCGCC	1 cut(s)	28
Psp124BI	GAGCTC	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	26
PspPI	GGNCC	2 cut(s)	4, 93
PvuII	CAGCTG	1 cut(s)	231
SacI	GAGCTC	1 cut(s)	67
SaqAI	TTAA	2 cut(s)	392, 481
SatI	GCNGC	4 cut(s)	232, 246, 249, 252
Sau3AI	GATC	1 cut(s)	202
Sau96I	GGNCC	2 cut(s)	4, 93
SduI	GDGCHC	1 cut(s)	67
SetI	ASST	4 cut(s)	67, 233, 328, 443
SfaNI	GCATC	2 cut(s)	155, 228
SfoI	GGCGCC	1 cut(s)	26
Sse9I	AATT	2 cut(s)	127, 273
SsiI	CCGC	6 cut(s)	15, 144, 243, 246, 249, 252
SspDI	GGCGCC	1 cut(s)	24
SspMI	CTAG	1 cut(s)	167
SstI	GAGCTC	1 cut(s)	67
StyI	CCWWGG	1 cut(s)	89
TaaI	ACNGT	1 cut(s)	269
TaiI	ACGT	1 cut(s)	443
TaqI	TCGA	3 cut(s)	104, 181, 222
TasI	AATT	2 cut(s)	127, 273
TauI	GCSGC	3 cut(s)	248, 251, 254
TfiI	GAWTC	2 cut(s)	106, 154
Tru1I	TTAA	2 cut(s)	392, 481
Tru9I	TTAA	2 cut(s)	392, 481
TseI	GCWGC	1 cut(s)	231
TspDTI	ATGAA	1 cut(s)	456
TspGWI	ACGGA	1 cut(s)	177
XapI	RAATTY	2 cut(s)	127, 273
XbaI	TCTAGA	1 cut(s)	166
XspI	CTAG	1 cut(s)	167
ZraI	GACGTC	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.