RchiOBHm_Chr1g0359441

Possible catecholamine-binding domain present in a variety of eukaryotic proteins.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0013451
Physical Location & Seq
Reverse (-)
51404097 .. 51406137
2041 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1203 bp
ATGGCGAATTCGGGGACTTGGCTTTTGGTTTTGAGGTTATGTGCTCTTCTCCTTTTCTTGGAGGCCAAGGTTTTTGTTTTGGGTGGTGATGATAGTAATGTCCAGGGTGGTAATACTATAGATGGGTCTGGTGGAGTATCAGTTTGTGTTAATGATCTGGCTAGTTTCATGCCACCACCATATGGTAATTCATCTGATATAGTCTGCAGGCCTATTTGGAACACTTTTGTTTTGAGGTACACCCAAACTGAAGATCATGTAATGAACATAATATTATCTGCTGTGTACACTACTGGGTGGGTAGGAATGGGATTTTCCAGAGATGGATTGATGGTTGGTTCAAGTGCCATAGTGGGATGGGTTAATAGAAAAGGCCATGCAAGAATTAAGCAATACTATTTGCAAGGTTCAAAGTCTTCGCAAGTTATACCAGACAAAGGTGAATTGCCACTTACTGGTATTCCTGCTACTGTTGTGCTTCATGGCCCTAGGATTTACTTGGCATTCCAGTTGAAATTTCAAGCTCATCTTTCTCGGCAACCTCTTATCTTGGCCGTTGGAAGCGGTTACCCCAAGCACAACAACCACTTAACAAAACACACCGATAAAACCACCATCAAGTTCGACTTCTCTGCAGGTTCTGCATCTGAGGCACCTAGTGATTTTGGGCAGATGAAGAAGAACCATGGAATATTGGCCATATTTGGATGGGGTATAATCATTCCTTTGGGGGCAATTGTTCCAAGATACTTCAAGCACAAGGACCCCTTGTGGTACTATCTCCATTCAATTATTCAGTTTGTGGGATTTGTCATTGGCCTTGCAGCAGTGGTACTTGGACAAAAACTCTATAATAAAATAGACGCCAATTTCCAAACACATAGAGCAATTGGAATCTTTGTTCTTGTGCTTAGTATCCTTCAGATATTGGCATTCTTTCTAAGACCAAGCAAGGATGCCAAGATTAGAAAGTACTGGAATTGGTACCACCACTGGTTTGGAAGGTTTGCAATCTTCTTTGCAGCTGTGAACATAGTTCTGGGGATCAACATTGGAGCTGCAGGCATTGAATGGAAGATTAGTTATGGATTTTTTCTCAGCGTAATTCTTATCGCAGTCATTGTTTTAGAAGTTTTGGCAAGGATGAGGAGGACAGAAAATAAGAATATGCCTCCAAACTTCCAAATGAATCCGGTTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000293 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016722 GO:0016723 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DOMON

Protein Analysis

400

Amino Acids

44.48

Weight (kDa)

9.74

Isoelectric Point (pI)

28.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOMON PF03351 79 - 145 3.4e-09 DOMON domain
Cytochrom_B561 PF03188 229 - 349 1e-07 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013451)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61750 AT3G61750
fragaria_vesca FvH4_7g16430
malus_domestica MD01G1080600.v1.1 MD07G1149500.v1.1
prunus_persica Prupe.2G188200_v2.0.a1
pyrus_communis pycom01g10870 pycom07g14810
rosa_chinensis RchiOBHm_Chr1g0359441
rosa_laevigata RLG00000027869
rosa_multiflora Rmu_ssc0000358.1_g000010
rosa_roxburghii Rroxscaffold_4G00297000
rosa_rugosa Rorug01G0271400
rosa_samantha Rh1AG284700 Rh1BG250700 Rh1CG268800 Rh1DG279800
rosa_wichuraiana Rw1G025290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 626
Acc65I GGTACC 1 cut(s) 984
AccB1I GGYRCC 2 cut(s) 652, 984
AccB7I CCANNNNNTGG 2 cut(s) 182, 455
AciI CCGC 1 cut(s) 564
AclWI GGATC 1 cut(s) 1052
AcoI YGGCCR 2 cut(s) 552, 696
AcsI RAATTY 2 cut(s) 7, 515
AcuI CTGAAG 2 cut(s) 270, 905
AcyI GRCGYC 1 cut(s) 864
AdeI CACNNNGTG 1 cut(s) 659
AfaI GTAC 6 cut(s) 239, 287, 776, 834, 974, 986
AfiI CCNNNNNNNGG 4 cut(s) 58, 182, 437, 455
AgsI TTSAA 7 cut(s) 342, 411, 514, 521, 754, 789, 1070
AjnI CCWGG 1 cut(s) 102
AloI GAACNNNNNNTCC 2 cut(s) 885, 917
AluBI AGCT 3 cut(s) 524, 1025, 1058
AluI AGCT 3 cut(s) 524, 1025, 1058
Alw21I GWGCWC 1 cut(s) 46
AlwI GGATC 1 cut(s) 1052
AlwNI CAGNNNCTG 1 cut(s) 641
AoxI GGCC 7 cut(s) 63, 209, 373, 484, 552, 696, 817
ApeKI GCWGC 3 cut(s) 824, 1022, 1058
ApoI RAATTY 2 cut(s) 7, 515
ArsI GACNNNNNNTTYG 2 cut(s) 7, 39
Asp718I GGTACC 1 cut(s) 984
AspA2I CCTAGG 1 cut(s) 488
AspS9I GGNCC 2 cut(s) 485, 763
AsuHPI GGTGA 2 cut(s) 98, 452
AvaII GGWCC 1 cut(s) 763
AvrII CCTAGG 1 cut(s) 488
BalI TGGCCA 1 cut(s) 698
BanI GGYRCC 2 cut(s) 652, 984
BbsI GAAGAC 1 cut(s) 408
Bbv12I GWGCWC 1 cut(s) 46
BbvI GCAGC 3 cut(s) 836, 1034, 1045
BccI CCATC 6 cut(s) 116, 317, 325, 351, 623, 702
BceAI ACGGC 1 cut(s) 539
BcgI CGANNNNNNTGC 2 cut(s) 614, 648
BciT130I CCWGG 1 cut(s) 104
BciVI GTATCC 1 cut(s) 926
BfaI CTAG 3 cut(s) 162, 489, 657
BfmI CTRYAG 4 cut(s) 117, 205, 633, 1059
BfuAI ACCTGC 1 cut(s) 626
BfuI GTATCC 1 cut(s) 926
BisI GCNGC 3 cut(s) 825, 1023, 1059
BlnI CCTAGG 1 cut(s) 488
BlsI GCNGC 3 cut(s) 826, 1024, 1060
BmcAI AGTACT 1 cut(s) 974
Bme1390I CCNGG 1 cut(s) 104
Bme18I GGWCC 1 cut(s) 763
BmgT120I GGNCC 2 cut(s) 485, 763
BmiI GGNNCC 4 cut(s) 654, 765, 986, 1197
BmrFI CCNGG 1 cut(s) 104
BmrI ACTGGG 1 cut(s) 303
BmsI GCATC 2 cut(s) 653, 946
BmuI ACTGGG 1 cut(s) 303
BpiI GAAGAC 1 cut(s) 408
BsaHI GRCGYC 1 cut(s) 864
BsaJI CCNNGG 4 cut(s) 66, 103, 488, 685
BsaWI WCCGGW 1 cut(s) 1192
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 182, 437, 455
Bse1I ACTGG 5 cut(s) 298, 460, 508, 980, 998
BseBI CCWGG 1 cut(s) 104
BseDI CCNNGG 4 cut(s) 66, 103, 488, 685
BseGI GGATG 4 cut(s) 362, 713, 961, 1149
BseLI CCNNNNNNNGG 4 cut(s) 58, 182, 437, 455
BseMII CTCAG 2 cut(s) 639, 1111
BseNI ACTGG 5 cut(s) 298, 460, 508, 980, 998
BseRI GAGGAG 1 cut(s) 1162
BseXI GCAGC 3 cut(s) 836, 1034, 1045
BshFI GGCC 7 cut(s) 65, 211, 375, 486, 554, 698, 819
BshNI GGYRCC 2 cut(s) 652, 984
BsiHKAI GWGCWC 1 cut(s) 46
BsiSI CCGG 1 cut(s) 1193
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 4 cut(s) 58, 182, 437, 455
BsmFI GGGAC 1 cut(s) 28
BsmI GAATGC 2 cut(s) 503, 932
BsnI GGCC 7 cut(s) 65, 211, 375, 486, 554, 698, 819
Bsp1286I GDGCHC 1 cut(s) 46
Bsp1407I TGTACA 1 cut(s) 285
Bsp143I GATC 3 cut(s) 154, 253, 1044
Bsp19I CCATGG 1 cut(s) 685
BspACI CCGC 1 cut(s) 564
BspANI GGCC 7 cut(s) 65, 211, 375, 486, 554, 698, 819
BspCNI CTCAG 2 cut(s) 640, 1110
BspLI GGNNCC 4 cut(s) 654, 765, 986, 1197
BspMAI CTGCAG 3 cut(s) 209, 637, 1063
BspMI ACCTGC 1 cut(s) 626
BspPI GGATC 1 cut(s) 1052
BspQI GCTCTTC 1 cut(s) 51
BspT107I GGYRCC 2 cut(s) 652, 984
BsrGI TGTACA 1 cut(s) 285
BsrI ACTGG 5 cut(s) 298, 460, 508, 980, 998
BssECI CCNNGG 4 cut(s) 66, 103, 488, 685
BssMI GATC 3 cut(s) 154, 253, 1044
BssNI GRCGYC 1 cut(s) 864
BssT1I CCWWGG 3 cut(s) 66, 488, 685
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 1 cut(s) 472
Bst6I CTCTTC 1 cut(s) 51
BstACI GRCGYC 1 cut(s) 864
BstAPI GCANNNNNTGC 1 cut(s) 641
BstAUI TGTACA 1 cut(s) 285
BstC8I GCNNGC 2 cut(s) 209, 1063
BstDEI CTNAG 4 cut(s) 648, 911, 941, 1097
BstDSI CCRYGG 1 cut(s) 685
BstEII GGTNACC 1 cut(s) 566
BstF5I GGATG 4 cut(s) 362, 713, 961, 1149
BstKTI GATC 3 cut(s) 157, 256, 1047
BstMBI GATC 3 cut(s) 154, 253, 1044
BstMWI GCNNNNNNNGC 2 cut(s) 641, 650
BstNI CCWGG 1 cut(s) 104
BstPI GGTNACC 1 cut(s) 566
BstSCI CCNGG 1 cut(s) 102
BstSFI CTRYAG 4 cut(s) 117, 205, 633, 1059
BstV1I GCAGC 3 cut(s) 836, 1034, 1045
BstV2I GAAGAC 1 cut(s) 408
BstXI CCANNNNNNTGG 1 cut(s) 998
BsuI GTATCC 1 cut(s) 926
BsuRI GGCC 7 cut(s) 65, 211, 375, 486, 554, 698, 819
BtgI CCRYGG 1 cut(s) 685
BtsCI GGATG 4 cut(s) 362, 713, 961, 1149
BtsI GCAGTG 1 cut(s) 834
BtsIMutI CAGTG 2 cut(s) 834, 991
BveI ACCTGC 1 cut(s) 626
Cac8I GCNNGC 2 cut(s) 209, 1063
CaiI CAGNNNCTG 1 cut(s) 641
Cfr13I GGNCC 2 cut(s) 485, 763
CseI GACGC 1 cut(s) 872
Csp6I GTAC 6 cut(s) 238, 286, 775, 833, 973, 985
CviAII CATG 5 cut(s) 169, 257, 377, 482, 686
CviQI GTAC 6 cut(s) 238, 286, 775, 833, 973, 985
DdeI CTNAG 4 cut(s) 648, 911, 941, 1097
DpnI GATC 3 cut(s) 156, 255, 1046
DpnII GATC 3 cut(s) 154, 253, 1044
DraIII CACNNNGTG 1 cut(s) 659
EaeI YGGCCR 2 cut(s) 552, 696
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 3 cut(s) 66, 488, 685
Eco147I AGGCCT 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 763
Eco57I CTGAAG 2 cut(s) 270, 905
Eco91I GGTNACC 1 cut(s) 566
EcoO109I RGGNCCY 1 cut(s) 763
EcoO65I GGTNACC 1 cut(s) 566
EcoRI GAATTC 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 102
EcoT14I CCWWGG 3 cut(s) 66, 488, 685
ErhI CCWWGG 3 cut(s) 66, 488, 685
FaeI CATG 5 cut(s) 172, 260, 380, 485, 689
FalI AAGNNNNNCTT 6 cut(s) 513, 545, 611, 643, 752, 784
FaqI GGGAC 1 cut(s) 28
FatI CATG 5 cut(s) 168, 256, 376, 481, 685
FauNDI CATATG 1 cut(s) 181
Fnu4HI GCNGC 3 cut(s) 825, 1023, 1059
FokI GGATG 4 cut(s) 369, 720, 968, 1156
Fsp4HI GCNGC 3 cut(s) 825, 1023, 1059
FspBI CTAG 3 cut(s) 162, 489, 657
GluI GCNGC 3 cut(s) 825, 1023, 1059
HaeIII GGCC 7 cut(s) 65, 211, 375, 486, 554, 698, 819
HapII CCGG 1 cut(s) 1193
HgaI GACGC 1 cut(s) 872
Hin1I GRCGYC 1 cut(s) 864
Hin1II CATG 5 cut(s) 172, 260, 380, 485, 689
HinfI GANTC 2 cut(s) 894, 1189
HpaII CCGG 1 cut(s) 1193
HphI GGTGA 2 cut(s) 98, 452
Hpy166II GTNNAC 4 cut(s) 240, 286, 288, 1030
Hpy188I TCNGA 3 cut(s) 196, 649, 924
Hpy188III TCNNGA 1 cut(s) 318
Hpy8I GTNNAC 4 cut(s) 240, 286, 288, 1030
HpyAV CCTTC 2 cut(s) 929, 996
HpyCH4III ACNGT 1 cut(s) 472
HpyCH4V TGCA 9 cut(s) 207, 380, 403, 635, 644, 824, 1010, 1022, 1061
HpyF10VI GCNNNNNNNGC 2 cut(s) 641, 650
HpyF3I CTNAG 4 cut(s) 648, 911, 941, 1097
Hsp92I GRCGYC 1 cut(s) 864
Hsp92II CATG 5 cut(s) 172, 260, 380, 485, 689
KpnI GGTACC 1 cut(s) 988
Kzo9I GATC 3 cut(s) 154, 253, 1044
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 1 cut(s) 1055
Lsp1109I GCAGC 3 cut(s) 836, 1034, 1045
LweI GCATC 2 cut(s) 653, 946
MaeI CTAG 3 cut(s) 162, 489, 657
MaeIII GTNAC 1 cut(s) 566
MalI GATC 3 cut(s) 156, 255, 1046
MboI GATC 3 cut(s) 154, 253, 1044
MboII GAAGA 7 cut(s) 38, 263, 408, 688, 691, 1006, 1087
MfeI CAATTG 2 cut(s) 735, 888
MhlI GDGCHC 1 cut(s) 46
MlsI TGGCCA 1 cut(s) 698
MluNI TGGCCA 1 cut(s) 698
MmeI TCCRAC 1 cut(s) 538
MnlI CCTC 8 cut(s) 27, 55, 228, 552, 643, 1140, 1143, 1182
Mox20I TGGCCA 1 cut(s) 698
MscI TGGCCA 1 cut(s) 698
MseI TTAA 4 cut(s) 150, 363, 387, 590
Msp20I TGGCCA 1 cut(s) 698
MspA1I CMGCKG 1 cut(s) 1025
MspI CCGG 1 cut(s) 1193
MspR9I CCNGG 1 cut(s) 104
MunI CAATTG 2 cut(s) 735, 888
Mva1269I GAATGC 2 cut(s) 503, 932
MvaI CCWGG 1 cut(s) 104
MwoI GCNNNNNNNGC 2 cut(s) 641, 650
NcoI CCATGG 1 cut(s) 685
NdeI CATATG 1 cut(s) 181
NdeII GATC 3 cut(s) 154, 253, 1044
NlaIII CATG 5 cut(s) 172, 260, 380, 485, 689
NlaIV GGNNCC 4 cut(s) 654, 765, 986, 1197
NmeAIII GCCGAG 1 cut(s) 514
PceI AGGCCT 1 cut(s) 211
PciSI GCTCTTC 1 cut(s) 51
PctI GAATGC 2 cut(s) 503, 932
PfeI GAWTC 2 cut(s) 894, 1189
PflMI CCANNNNNTGG 2 cut(s) 182, 455
PkrI GCNGC 3 cut(s) 826, 1024, 1060
PpuMI RGGWCCY 1 cut(s) 763
Psp5II RGGWCCY 1 cut(s) 763
Psp6I CCWGG 1 cut(s) 102
PspEI GGTNACC 1 cut(s) 566
PspGI CCWGG 1 cut(s) 102
PspN4I GGNNCC 4 cut(s) 654, 765, 986, 1197
PspPI GGNCC 2 cut(s) 485, 763
PspPPI RGGWCCY 1 cut(s) 763
PstI CTGCAG 3 cut(s) 209, 637, 1063
PstNI CAGNNNCTG 1 cut(s) 641
PvuII CAGCTG 1 cut(s) 1025
RsaI GTAC 6 cut(s) 239, 287, 776, 834, 974, 986
RsaNI GTAC 6 cut(s) 238, 286, 775, 833, 973, 985
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 4 cut(s) 150, 363, 387, 590
SatI GCNGC 3 cut(s) 825, 1023, 1059
Sau3AI GATC 3 cut(s) 154, 253, 1044
Sau96I GGNCC 2 cut(s) 485, 763
ScaI AGTACT 1 cut(s) 974
ScrFI CCNGG 1 cut(s) 104
SduI GDGCHC 1 cut(s) 46
SfaNI GCATC 2 cut(s) 653, 946
SfcI CTRYAG 4 cut(s) 117, 205, 633, 1059
SinI GGWCC 1 cut(s) 763
SseBI AGGCCT 1 cut(s) 211
SsiI CCGC 1 cut(s) 564
SspI AATATT 2 cut(s) 273, 693
SspMI CTAG 3 cut(s) 162, 489, 657
StuI AGGCCT 1 cut(s) 211
StyD4I CCNGG 1 cut(s) 102
StyI CCWWGG 3 cut(s) 66, 488, 685
TaaI ACNGT 1 cut(s) 472
TaqI TCGA 1 cut(s) 624
TatI WGTACW 2 cut(s) 285, 972
TfiI GAWTC 2 cut(s) 894, 1189
Tru1I TTAA 4 cut(s) 150, 363, 387, 590
Tru9I TTAA 4 cut(s) 150, 363, 387, 590
TscAI CASTG 2 cut(s) 834, 998
TseI GCWGC 3 cut(s) 824, 1022, 1058
TspDTI ATGAA 6 cut(s) 157, 180, 278, 470, 689, 1202
TspRI CASTG 2 cut(s) 834, 998
Van91I CCANNNNNTGG 2 cut(s) 182, 455
VpaK11BI GGWCC 1 cut(s) 763
XapI RAATTY 2 cut(s) 7, 515
XcmI CCANNNNNNNNNTGG 1 cut(s) 995
XmaJI CCTAGG 1 cut(s) 488
XspI CTAG 3 cut(s) 162, 489, 657
ZrmI AGTACT 1 cut(s) 974
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.