RchiOBHm_Chr1g0359491

Divergent PAP2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0013308
Physical Location & Seq
Forward (+)
51458692 .. 51461561
2870 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 828 bp
ATGGACTCCATCACAACAACAAAGCACCCATTCAGCTCCTTCATTCTCAGCCCCTTAAACCCACACACTAAACCCTCCTTCACAGCAAATTTCTCCCGTTTCAAGAAGCTCAGGAAGTCTTTGGTTTGTTTCTCTCATAGGCCTTGTTCTAATTCAAATCCCAGAAACCCAAGATGGCCAAAGCCCTTGTCTTTTCGCAAGTTTCCCTTAAACCCTATCTGGGTTTTGTTCCCGTGGGCTTCTTTTGTACAGGCTTATACAGACTCAGGGAGGCTTGTACATGAAAAAAGCAACGATTTTTTGCACAACAGTGGGATTGGGTTAGCTTTGTTAAGCGTGACCACAGATGCGAAGGTGAAGATTAGTCCTTTCGTGGCTCAACTGGCTGCGAATCCGACCTTTGTTTCGGGGATGTTTGCTTGGTTTATGGCACAGTCGATCAAAGTGGTGTTGAATTTCTTTGTGGAGAGGAAGTGGGATTTGAGGATATTGTATGCTTCTGGAGGCATGCCTTCGTCTCATTCGGCTTTGTGCACTGCTTTGACGACATCTGTGGCGCTTTGTCATGGTGTTGCGGACTCATTGTTTCCGGTTTGTTTGGGGTTTAGCCTCATTGTTATGTATGATGCTATTGGGGTTAGGAGACATGCTGGTATGCAAGCTGAGGTGCTGAATGTAGTCGTAGAGTACTTATTCCAAGGGCATCCAATCAGCCAAAAGAAGCTCAAGGAACTCCTTGGTCACACCCCCTCCCAGGTTCTTGCTGGAGCTGTCCTCGGCATTGTGGTCGCATGTGTTTGTTGCCAGGGTAGCTTGGTTGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

275

Amino Acids

30.2

Weight (kDa)

9.69

Isoelectric Point (pI)

34.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF212 PF02681 130 - 263 6.8e-49 Divergent PAP2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013308)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61770
fragaria_vesca FvH4_7g16450 FvH4_7g16450
malus_domestica MD01G1080900.v1.1
prunus_persica Prupe.2G188600_v2.0.a1 Prupe.2G188600_v2.0.a1
pyrus_communis pycom01g10890
rosa_chinensis RchiOBHm_Chr1g0359491
rosa_laevigata RLG00000027865
rosa_multiflora Rmu_sc0002556.1_g000008
rosa_roxburghii Rroxscaffold_4G00296960
rosa_rugosa Rorug01G0271600 Rorug01G0271700
rosa_samantha Rh1AG285100 Rh1BG251200 Rh1CG269000 Rh1DG280300
rosa_wichuraiana Rw1G025350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 575
AcoI YGGCCR 1 cut(s) 176
AcsI RAATTY 2 cut(s) 88, 454
AfaI GTAC 3 cut(s) 249, 279, 689
AfiI CCNNNNNNNGG 2 cut(s) 220, 754
AgsI TTSAA 3 cut(s) 103, 156, 454
AjnI CCWGG 2 cut(s) 753, 804
AleI CACNNNNGTG 1 cut(s) 309
AluBI AGCT 7 cut(s) 36, 109, 326, 662, 724, 770, 813
AluI AGCT 7 cut(s) 36, 109, 326, 662, 724, 770, 813
Alw21I GWGCWC 1 cut(s) 536
Alw26I GTCTC 2 cut(s) 522, 637
Alw44I GTGCAC 1 cut(s) 532
AoxI GGCC 2 cut(s) 140, 176
ApaLI GTGCAC 1 cut(s) 532
ApeKI GCWGC 2 cut(s) 386, 821
ApoI RAATTY 2 cut(s) 88, 454
ArsI GACNNNNNNTTYG 4 cut(s) 173, 205, 388, 420
AspLEI GCGC 1 cut(s) 559
AsuHPI GGTGA 1 cut(s) 367
BaeGI GKGCMC 1 cut(s) 536
BalI TGGCCA 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 536
BbvCI CCTCAGC 1 cut(s) 663
BbvI GCAGC 2 cut(s) 373, 808
BccI CCATC 2 cut(s) 17, 168
BcgI CGANNNNNNTGC 2 cut(s) 769, 803
BciT130I CCWGG 2 cut(s) 755, 806
BcoDI GTCTC 2 cut(s) 522, 637
BfoI RGCGCY 1 cut(s) 560
BisI GCNGC 2 cut(s) 387, 822
BlsI GCNGC 2 cut(s) 388, 823
BmcAI AGTACT 1 cut(s) 689
Bme1390I CCNGG 2 cut(s) 755, 806
BmrFI CCNGG 2 cut(s) 755, 806
BmsI GCATC 3 cut(s) 337, 616, 712
BplI GAGNNNNNCTC 2 cut(s) 759, 791
BpmI CTGGAG 2 cut(s) 522, 786
Bpu10I CCTNAGC 2 cut(s) 110, 663
BpuEI CTTGAG 1 cut(s) 710
BsaJI CCNNGG 6 cut(s) 233, 697, 736, 753, 775, 805
BsaWI WCCGGW 1 cut(s) 589
BsaXI ACNNNNNCTCC 4 cut(s) 458, 488, 734, 764
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 754
Bse1I ACTGG 1 cut(s) 387
BseBI CCWGG 2 cut(s) 755, 806
BseDI CCNNGG 6 cut(s) 233, 697, 736, 753, 775, 805
BseGI GGATG 2 cut(s) 417, 703
BseLI CCNNNNNNNGG 2 cut(s) 220, 754
BseMII CTCAG 4 cut(s) 61, 124, 279, 654
BseNI ACTGG 1 cut(s) 387
BseSI GKGCMC 1 cut(s) 536
BseXI GCAGC 2 cut(s) 373, 808
BshFI GGCC 2 cut(s) 142, 178
BsiHKAI GWGCWC 1 cut(s) 536
BsiSI CCGG 1 cut(s) 590
BslI CCNNNNNNNGG 2 cut(s) 220, 754
BsmAI GTCTC 2 cut(s) 522, 637
BsmBI CGTCTC 1 cut(s) 522
BsnI GGCC 2 cut(s) 142, 178
Bsp1286I GDGCHC 1 cut(s) 536
Bsp1407I TGTACA 2 cut(s) 247, 277
Bsp143I GATC 1 cut(s) 438
BspACI CCGC 1 cut(s) 575
BspANI GGCC 2 cut(s) 142, 178
BspCNI CTCAG 4 cut(s) 60, 123, 278, 655
BsrGI TGTACA 2 cut(s) 247, 277
BsrI ACTGG 1 cut(s) 387
BssECI CCNNGG 6 cut(s) 233, 697, 736, 753, 775, 805
BssMI GATC 1 cut(s) 438
BssT1I CCWWGG 2 cut(s) 697, 736
Bst2UI CCWGG 2 cut(s) 755, 806
Bst4CI ACNGT 2 cut(s) 311, 435
BstAUI TGTACA 2 cut(s) 247, 277
BstC8I GCNNGC 2 cut(s) 509, 660
BstDEI CTNAG 4 cut(s) 47, 110, 265, 663
BstDSI CCRYGG 1 cut(s) 233
BstF5I GGATG 2 cut(s) 417, 703
BstH2I RGCGCY 1 cut(s) 560
BstHHI GCGC 1 cut(s) 559
BstKTI GATC 1 cut(s) 441
BstMAI GTCTC 2 cut(s) 522, 637
BstMBI GATC 1 cut(s) 438
BstMWI GCNNNNNNNGC 2 cut(s) 383, 810
BstNI CCWGG 2 cut(s) 755, 806
BstNSI RCATGY 3 cut(s) 511, 650, 795
BstSCI CCNGG 2 cut(s) 753, 804
BstSLI GKGCMC 1 cut(s) 536
BstV1I GCAGC 2 cut(s) 373, 808
BsuRI GGCC 2 cut(s) 142, 178
BtgI CCRYGG 1 cut(s) 233
BtsCI GGATG 2 cut(s) 417, 703
BtsI GCAGTG 1 cut(s) 534
BtsIMutI CAGTG 2 cut(s) 316, 534
Cac8I GCNNGC 2 cut(s) 509, 660
CfoI GCGC 1 cut(s) 559
Csp6I GTAC 3 cut(s) 248, 278, 688
CviAII CATG 5 cut(s) 281, 508, 566, 647, 792
CviQI GTAC 3 cut(s) 248, 278, 688
DdeI CTNAG 4 cut(s) 47, 110, 265, 663
DpnI GATC 1 cut(s) 440
DpnII GATC 1 cut(s) 438
EaeI YGGCCR 1 cut(s) 176
Eco130I CCWWGG 2 cut(s) 697, 736
Eco147I AGGCCT 1 cut(s) 142
EcoRII CCWGG 2 cut(s) 753, 804
EcoT14I CCWWGG 2 cut(s) 697, 736
ErhI CCWWGG 2 cut(s) 697, 736
Esp3I CGTCTC 1 cut(s) 522
FaeI CATG 5 cut(s) 284, 511, 569, 650, 795
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FatI CATG 5 cut(s) 280, 507, 565, 646, 791
Fnu4HI GCNGC 2 cut(s) 387, 822
FokI GGATG 2 cut(s) 424, 690
Fsp4HI GCNGC 2 cut(s) 387, 822
GlaI GCGC 1 cut(s) 558
GluI GCNGC 2 cut(s) 387, 822
GsuI CTGGAG 2 cut(s) 522, 786
HaeII RGCGCY 1 cut(s) 560
HaeIII GGCC 2 cut(s) 142, 178
HapII CCGG 1 cut(s) 590
HhaI GCGC 1 cut(s) 559
Hin1II CATG 5 cut(s) 284, 511, 569, 650, 795
Hin6I GCGC 1 cut(s) 557
HinP1I GCGC 1 cut(s) 557
HinfI GANTC 4 cut(s) 5, 263, 391, 578
HpaII CCGG 1 cut(s) 590
HphI GGTGA 1 cut(s) 367
Hpy166II GTNNAC 1 cut(s) 534
Hpy188I TCNGA 1 cut(s) 396
Hpy188III TCNNGA 3 cut(s) 103, 112, 501
Hpy8I GTNNAC 1 cut(s) 534
HpyAV CCTTC 4 cut(s) 49, 88, 346, 522
HpyCH4III ACNGT 2 cut(s) 311, 435
HpyCH4V TGCA 3 cut(s) 304, 534, 658
HpyF10VI GCNNNNNNNGC 2 cut(s) 383, 810
HpyF3I CTNAG 4 cut(s) 47, 110, 265, 663
Hsp92II CATG 5 cut(s) 284, 511, 569, 650, 795
HspAI GCGC 1 cut(s) 557
Kzo9I GATC 1 cut(s) 438
LmnI GCTCC 2 cut(s) 41, 767
Lsp1109I GCAGC 2 cut(s) 373, 808
LweI GCATC 3 cut(s) 337, 616, 712
MaeIII GTNAC 2 cut(s) 337, 740
MalI GATC 1 cut(s) 440
MboI GATC 1 cut(s) 438
MboII GAAGA 1 cut(s) 370
MhlI GDGCHC 1 cut(s) 536
MlsI TGGCCA 1 cut(s) 178
MluCI AATT 3 cut(s) 88, 151, 454
MluNI TGGCCA 1 cut(s) 178
MlyI GAGTC 2 cut(s) 257, 572
MmeI TCCRAC 1 cut(s) 419
MnlI CCTC 9 cut(s) 85, 264, 462, 477, 497, 620, 658, 760, 785
Mox20I TGGCCA 1 cut(s) 178
MscI TGGCCA 1 cut(s) 178
MseI TTAA 3 cut(s) 56, 209, 332
MslI CAYNNNNRTG 2 cut(s) 309, 617
Msp20I TGGCCA 1 cut(s) 178
MspI CCGG 1 cut(s) 590
MspR9I CCNGG 2 cut(s) 755, 806
MvaI CCWGG 2 cut(s) 755, 806
MwoI GCNNNNNNNGC 2 cut(s) 383, 810
NdeII GATC 1 cut(s) 438
NlaIII CATG 5 cut(s) 284, 511, 569, 650, 795
NmeAIII GCCGAG 1 cut(s) 756
NmuCI GTSAC 2 cut(s) 337, 740
NspI RCATGY 3 cut(s) 511, 650, 795
OliI CACNNNNGTG 1 cut(s) 309
PaeI GCATGC 1 cut(s) 511
PceI AGGCCT 1 cut(s) 142
PfeI GAWTC 1 cut(s) 391
PkrI GCNGC 2 cut(s) 388, 823
PleI GAGTC 2 cut(s) 257, 572
PpsI GAGTC 2 cut(s) 257, 572
Psp6I CCWGG 2 cut(s) 753, 804
PspGI CCWGG 2 cut(s) 753, 804
RsaI GTAC 3 cut(s) 249, 279, 689
RsaNI GTAC 3 cut(s) 248, 278, 688
RseI CAYNNNNRTG 2 cut(s) 309, 617
SaqAI TTAA 3 cut(s) 56, 209, 332
SatI GCNGC 2 cut(s) 387, 822
Sau3AI GATC 1 cut(s) 438
ScaI AGTACT 1 cut(s) 689
SchI GAGTC 2 cut(s) 257, 572
ScrFI CCNGG 2 cut(s) 755, 806
SduI GDGCHC 1 cut(s) 536
SfaNI GCATC 3 cut(s) 337, 616, 712
SmiMI CAYNNNNRTG 2 cut(s) 309, 617
SmlI CTYRAG 1 cut(s) 725
SmoI CTYRAG 1 cut(s) 725
SphI GCATGC 1 cut(s) 511
Sse9I AATT 3 cut(s) 88, 151, 454
SseBI AGGCCT 1 cut(s) 142
SsiI CCGC 1 cut(s) 575
StuI AGGCCT 1 cut(s) 142
StyD4I CCNGG 2 cut(s) 753, 804
StyI CCWWGG 2 cut(s) 697, 736
TaaI ACNGT 2 cut(s) 311, 435
TaqI TCGA 1 cut(s) 437
TasI AATT 3 cut(s) 88, 151, 454
TatI WGTACW 3 cut(s) 247, 277, 687
TfiI GAWTC 1 cut(s) 391
Tru1I TTAA 3 cut(s) 56, 209, 332
Tru9I TTAA 3 cut(s) 56, 209, 332
TscAI CASTG 2 cut(s) 316, 541
TseFI GTSAC 2 cut(s) 337, 740
TseI GCWGC 2 cut(s) 386, 821
Tsp45I GTSAC 2 cut(s) 337, 740
TspDTI ATGAA 2 cut(s) 31, 297
TspRI CASTG 2 cut(s) 316, 541
VneI GTGCAC 1 cut(s) 532
XapI RAATTY 2 cut(s) 88, 454
XceI RCATGY 3 cut(s) 511, 650, 795
XcmI CCANNNNNNNNNTGG 1 cut(s) 761
ZrmI AGTACT 1 cut(s) 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.