Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008253

Physical Location & Seq

Genomic Coordinates Reverse (-)

53988010 .. 53991844

Gene Structure 3835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2214 bp

ATGTGGTGGGCCTCACTTTCCCTCCAAATAATAATATGCTCCAATCCCACTGGAGATACCTCCGAATCTTCTCGCCGATCGTTCCTTAACTCAAACCCAATCACTCCCAAATCCAAGCCCTGTTACAGGATGACAGCTCTGACCTCCCAACTCGTGCTCCTTGATCTCCAGAACTCATGGCACTCCGCCACCCAATTCCCCATCTCCACCCTCTGTTTTCTCCAGACCTCCAACTTCGTCTCCACACTCTCTTCCTCATTTCGTCGAACACGTGGCCTGCATAGGGGAATTGCTTCTTCCTCCAAACACTCCTCGTCGCCGGCGATTCGCCGCCCGTCGGATCGGTTCTTCTCCGGCAATGGGTCGTCGTCGAATCCGGGGAGCTCGGCTTCCACGTCGCAGACCCAGGCCGCGTCGGAGCTGGAGCTGTTTCTGGAGTTGTTGCCGGAGAGGATGAAGAGCGAGCTGTACAGGCATGAGGAGATCGGCAGGCTCATTGAGGTCGTCATGGATTTGGGCAGGCCTCCGATTGCCAGGTTTCCCACCGGCGATTGGGTCATCTCGGAATATCCTGTCAGCCAAGAAGATCTCCGGCTCGCTGTATCCAAGGTTAGTGAGTTTTCAGATGACAACCGTTCTGGTATTAATAACTCATTACACCGGATAAGTGCTATCCGAAACCGAAAGCTGCAAATCATTGGACTTACTTGCCGGGTGGGGAGAGCTGTGTCGGGAAGTGCTGAGATCATCCGCGACTTGGTTGAGGGTGGTGGTTCAATCTTGGTTATAGGACCTCCTGGAGTTGGCAAGACAACCTTGATCAGAGAAATTGCTAGAATGTTGGCGGATGAGCATATGAAGCGTGTTGTCATTGTGGATACATCGAATGAGATTGGGGGAGATGGAGATGTACCTCATGCGGGAATAGGGCGTGCAAGGAGGATGCAAGTTCCTAATGTGAACATGCAGCATAATGTTATGATTGAAGCAGTTGAAAATCATATGCCTCAAACCATTATAATAGATGAAATTGGGACAGAGCTTGAAGCATTGGCTTCCAGTACTATTGCTCAAAGAGGAGTTCAGCTAGTTGGAACAGCACATGGAATGACGATAGACAATATAATAAAGAATCCTTCTTTACAAATCCTTGTTGGTGGTATAGAGAGTGTGACCCTGGGAGATGAAGAAGCGAGAAAGAGGAAAGTTCAAAAGACAATTCTTGAAAGAAAGGGGCCTCCTACATTTACATGTGCTGTTGAGATTATATCTAAAACAGAATTTCGAGTTCATCACAGATTAGATGCGACCGTGGATGCTATACTAGCTGGGAAATCTCCTCTGTTTGAAGTTCGTCGTATTGATGCGGATGCTGATGACTCTTGCATGTCTACTCAAATATCCGAACCGAACTATCAAAAAGTATCAGATTTTGGTGTTACTAAAGACATTATTGCTAGTGTTTTGGAGTCTGACGAGGAAGATCTAGATCCTTCACCCAATGTGTCTAGAAGATTGAGCAGTGATAAATCTGTGAAGAAGAGAAGTTCACCAGTGTGTATATATACATACAAGATCCTTGAAGCTGACCTACTGCAAGTAGCACAGGTGATGGGGCTTGAGGATGAAATTGAGGTAACTGATGATATTGGAACAGCAGATGCAATTATAGCATCCAGTTCTGAGATGAAGCAAAACCCATGGATTCGTGGTGTAGCAAAATTCCACCAGTTGCCTGTATTTGTCATGAAGTCAAATACCATGGCACAAATCGTGAAGGCAGTTCGTACGATTCTTGAAATGGAATCAGTTGGTTCTTTGCCAAAGCAGCTTGTCAATAATTCCTTTGACATTGAAATTGAAGATGATGCACCCAAAAGAAAACCATCTTTAGAAGAGATCGATGCGTTGGAGGAGGTTCGACTTGCAATCGAGTATATAGTGATTCCTGGTGGAGAGCCCGTAGAGCTCCTTCCAAGACGCTCCGAAATAATTGCCAGACAGCTGGAGCTGGTGGAAAGTTATCAGTTGGCTGCTGAAAATTCAGGTACTAAGCGCAATCCAAGGTTGCAGATTCTTCCCATGAGGATAAACAAGAAGAGTTCTTCGAAACCTGTTAAATCCAATTCTATGAAACCGACTAACTCTAAATCACTAACCGGTGGTGGCGGAGGTAGCAGTGTTACTAGGCTCCCCCTTTTATCAGAACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

737

Amino Acids

80.92

Weight (kDa)

6.3

Isoelectric Point (pI)

53.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spore_III_AA	PF19568	232 - 385	5.2e-13	Sporulation stage III, protein AA
AAA	PF00004	260 - 345	8.7e-06	ATPase family associated with various cellular activities (AAA)
PTPase	PF25516	519 - 599	3.9e-28	Phosphotyrosine protein phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10420 AT3G10420
fragaria_vesca	FvH4_7g18530 FvH4_7g18530 FvH4_7g18530
malus_domestica	MD01G1101700.v1.1 MD07G1168300.v1.1
prunus_persica	Prupe.2G206900_v2.0.a1
pyrus_communis	pycom01g12830 pycom07g16270
rosa_chinensis	RchiOBHm_Chr1g0362311
rosa_laevigata	RLG00000027652
rosa_multiflora	Rmu_sc0013178.1_g000001 Rmu_sc0037182.1_g000001
rosa_roxburghii	Rroxscaffold_4G00294260
rosa_rugosa	Rorug01G0297300.1 Rorug01G0297400 Rorug01G0297500
rosa_samantha	Rh1AG306200 Rh1BG269700 Rh1CG287200 Rh1DG299900
rosa_wichuraiana	Rw1G027180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1019
AccI	GTMKAC	1 cut(s)	1391
AccII	CGCG	2 cut(s)	413, 753
AciI	CCGC	8 cut(s)	186, 331, 411, 751, 845, 920, 1367, 2169
AclWI	GGATC	3 cut(s)	348, 1484, 1570
AcsI	RAATTY	3 cut(s)	1280, 1721, 2041
AcvI	CACGTG	1 cut(s)	272
AfaI	GTAC	5 cut(s)	470, 912, 1063, 1789, 2050
AfiI	CCNNNNNNNGG	8 cut(s)	126, 283, 337, 360, 552, 757, 803, 920
AflIII	ACRYGT	2 cut(s)	269, 1250
AgeI	ACCGGT	1 cut(s)	2159
AjiI	CACGTC	1 cut(s)	396
AjnI	CCWGG	5 cut(s)	405, 533, 796, 1176, 1948
AleI	CACNNNNGTG	1 cut(s)	1555
Alw21I	GWGCWC	3 cut(s)	159, 386, 1971
Alw26I	GTCTC	1 cut(s)	244
AlwI	GGATC	3 cut(s)	348, 1484, 1570
AoxI	GGCC	5 cut(s)	9, 274, 408, 521, 1235
ApeKI	GCWGC	4 cut(s)	688, 967, 1828, 2033
ApoI	RAATTY	3 cut(s)	1280, 1721, 2041
AseI	ATTAAT	1 cut(s)	645
AsiGI	ACCGGT	1 cut(s)	2159
Asp700I	GAANNNNTTC	1 cut(s)	292
AspLEI	GCGC	1 cut(s)	2058
AspS9I	GGNCC	3 cut(s)	9, 791, 1235
AsuC2I	CCSGG	2 cut(s)	378, 713
AsuHPI	GGTGA	3 cut(s)	1488, 1542, 1621
AsuII	TTCGAA	1 cut(s)	2108
AvaII	GGWCC	1 cut(s)	791
BanII	GRGCYC	3 cut(s)	386, 1962, 1971
BarI	GAAGNNNNNNTAC	4 cut(s)	1575, 1607, 1956, 1988
BauI	CACGAG	1 cut(s)	152
BbrPI	CACGTG	1 cut(s)	272
Bbv12I	GWGCWC	3 cut(s)	159, 386, 1971
BbvI	GCAGC	4 cut(s)	675, 979, 1840, 2020
BccI	CCATC	4 cut(s)	209, 896, 1606, 1894
BcgI	CGANNNNNNTGC	2 cut(s)	1976, 2010
BciT130I	CCWGG	5 cut(s)	407, 535, 798, 1178, 1950
BciVI	GTATCC	2 cut(s)	613, 871
BclI	TGATCA	1 cut(s)	819
BcnI	CCSGG	2 cut(s)	378, 713
BcoDI	GTCTC	1 cut(s)	244
BfaI	CTAG	7 cut(s)	834, 1088, 1325, 1458, 1487, 1509, 2187
BfuI	GTATCC	2 cut(s)	613, 871
BglII	AGATCT	2 cut(s)	586, 1483
BisI	GCNGC	6 cut(s)	331, 411, 689, 968, 1829, 2034
BlsI	GCNGC	6 cut(s)	332, 412, 690, 969, 1830, 2035
BmcAI	AGTACT	1 cut(s)	1063
Bme1390I	CCNGG	7 cut(s)	378, 407, 535, 713, 798, 1178, 1950
Bme18I	GGWCC	1 cut(s)	791
BmgBI	CACGTC	1 cut(s)	396
BmgT120I	GGNCC	3 cut(s)	9, 791, 1235
BmiI	GGNNCC	2 cut(s)	1236, 2192
BmrFI	CCNGG	7 cut(s)	378, 407, 535, 713, 798, 1178, 1950
BmsI	GCATC	9 cut(s)	933, 1294, 1306, 1354, 1360, 1651, 1682, 1858, 1894
BpmI	CTGGAG	7 cut(s)	72, 152, 206, 443, 455, 819, 2027
Bpu14I	TTCGAA	1 cut(s)	2108
BpuEI	CTTGAG	1 cut(s)	1640
BpuMI	CCSGG	2 cut(s)	378, 713
Bsa29I	ATCGAT	1 cut(s)	1902
BsaAI	YACGTR	1 cut(s)	272
BsaBI	GATNNNNATC	1 cut(s)	1488
BsaJI	CCNNGG	9 cut(s)	377, 405, 606, 1176, 1177, 1311, 1700, 1761, 2063
BsaWI	WCCGGW	2 cut(s)	660, 2159
BsaXI	ACNNNNNCTCC	8 cut(s)	6, 36, 141, 171, 224, 254, 1947, 1977
Bsc4I	CCNNNNNNNGG	8 cut(s)	126, 283, 337, 360, 552, 757, 803, 920
Bse118I	RCCGGY	3 cut(s)	319, 545, 2159
Bse1I	ACTGG	5 cut(s)	55, 1059, 1553, 1677, 1729
Bse3DI	GCAATG	1 cut(s)	364
Bse8I	GATNNNNATC	1 cut(s)	1488
BseBI	CCWGG	5 cut(s)	407, 535, 798, 1178, 1950
BseCI	ATCGAT	1 cut(s)	1902
BseDI	CCNNGG	9 cut(s)	377, 405, 606, 1176, 1177, 1311, 1700, 1761, 2063
BseGI	GGATG	9 cut(s)	135, 459, 747, 853, 948, 1321, 1375, 1630, 1673
BseJI	GATNNNNATC	1 cut(s)	1488
BseLI	CCNNNNNNNGG	8 cut(s)	126, 283, 337, 360, 552, 757, 803, 920
BseMI	GCAATG	1 cut(s)	364
BseMII	CTCAG	2 cut(s)	732, 1674
BseNI	ACTGG	5 cut(s)	55, 1059, 1553, 1677, 1729
BseRI	GAGGAG	5 cut(s)	301, 494, 1092, 1329, 1928
BseXI	GCAGC	4 cut(s)	675, 979, 1840, 2020
BseYI	CCCAGC	1 cut(s)	1328
Bsh1236I	CGCG	2 cut(s)	413, 753
Bsh1285I	CGRYCG	2 cut(s)	80, 1311
BshFI	GGCC	5 cut(s)	11, 276, 410, 523, 1237
BshTI	ACCGGT	1 cut(s)	2159
BshVI	ATCGAT	1 cut(s)	1902
BsiEI	CGRYCG	2 cut(s)	80, 1311
BsiHKAI	GWGCWC	3 cut(s)	159, 386, 1971
BsiSI	CCGG	9 cut(s)	320, 354, 377, 446, 546, 592, 661, 712, 2160
BsiWI	CGTACG	1 cut(s)	1787
BslFI	GGGAC	1 cut(s)	1048
BslI	CCNNNNNNNGG	8 cut(s)	126, 283, 337, 360, 552, 757, 803, 920
BsmAI	GTCTC	1 cut(s)	244
BsmBI	CGTCTC	1 cut(s)	244
BsmFI	GGGAC	1 cut(s)	1048
BsnI	GGCC	5 cut(s)	11, 276, 410, 523, 1237
Bsp119I	TTCGAA	1 cut(s)	2108
Bsp1286I	GDGCHC	4 cut(s)	159, 386, 1962, 1971
Bsp1407I	TGTACA	1 cut(s)	468
Bsp19I	CCATGG	2 cut(s)	1700, 1761
BspACI	CCGC	8 cut(s)	186, 331, 411, 751, 845, 920, 1367, 2169
BspANI	GGCC	5 cut(s)	11, 276, 410, 523, 1237
BspCNI	CTCAG	2 cut(s)	733, 1675
BspDI	ATCGAT	1 cut(s)	1902
BspFNI	CGCG	2 cut(s)	413, 753
BspHI	TCATGA	1 cut(s)	1746
BspLI	GGNNCC	2 cut(s)	1236, 2192
BspPI	GGATC	3 cut(s)	348, 1484, 1570
BspQI	GCTCTTC	1 cut(s)	452
BspT104I	TTCGAA	1 cut(s)	2108
BsrDI	GCAATG	1 cut(s)	364
BsrFI	RCCGGY	3 cut(s)	319, 545, 2159
BsrGI	TGTACA	1 cut(s)	468
BsrI	ACTGG	5 cut(s)	55, 1059, 1553, 1677, 1729
BssAI	RCCGGY	3 cut(s)	319, 545, 2159
BssECI	CCNNGG	9 cut(s)	377, 405, 606, 1176, 1177, 1311, 1700, 1761, 2063
BssSI	CACGAG	1 cut(s)	152
BssT1I	CCWWGG	4 cut(s)	606, 1700, 1761, 2063
Bst2BI	CACGAG	1 cut(s)	152
Bst2UI	CCWGG	5 cut(s)	407, 535, 798, 1178, 1950
Bst4CI	ACNGT	2 cut(s)	635, 1312
Bst6I	CTCTTC	5 cut(s)	256, 452, 1535, 1890, 2093
BstAUI	TGTACA	1 cut(s)	468
BstBAI	YACGTR	1 cut(s)	272
BstBI	TTCGAA	1 cut(s)	2108
BstC8I	GCNNGC	7 cut(s)	278, 321, 464, 491, 521, 597, 933
BstDEI	CTNAG	3 cut(s)	741, 1683, 2052
BstDSI	CCRYGG	3 cut(s)	1311, 1700, 1761
BstENI	CCTNNNNNAGG	1 cut(s)	124
BstF5I	GGATG	9 cut(s)	135, 459, 747, 853, 948, 1321, 1375, 1630, 1673
BstFNI	CGCG	2 cut(s)	413, 753
BstHHI	GCGC	1 cut(s)	2058
BstMAI	GTCTC	1 cut(s)	244
BstMCI	CGRYCG	2 cut(s)	80, 1311
BstMWI	GCNNNNNNNGC	7 cut(s)	472, 859, 1325, 1670, 1828, 1966, 2175
BstNI	CCWGG	5 cut(s)	407, 535, 798, 1178, 1950
BstNSI	RCATGY	3 cut(s)	967, 1254, 1390
BstSCI	CCNGG	7 cut(s)	376, 405, 533, 711, 796, 1176, 1948
BstUI	CGCG	2 cut(s)	413, 753
BstV1I	GCAGC	4 cut(s)	675, 979, 1840, 2020
BstX2I	RGATCY	4 cut(s)	586, 1483, 1489, 1575
BstXI	CCANNNNNNTGG	1 cut(s)	2005
BstYI	RGATCY	4 cut(s)	586, 1483, 1489, 1575
Bsu15I	ATCGAT	1 cut(s)	1902
BsuI	GTATCC	2 cut(s)	613, 871
BsuRI	GGCC	5 cut(s)	11, 276, 410, 523, 1237
BsuTUI	ATCGAT	1 cut(s)	1902
BtgI	CCRYGG	3 cut(s)	1311, 1700, 1761
BtrI	CACGTC	1 cut(s)	396
BtsCI	GGATG	9 cut(s)	135, 459, 747, 853, 948, 1321, 1375, 1630, 1673
BtsI	GCAGTG	2 cut(s)	1528, 2185
BtsIMutI	CAGTG	4 cut(s)	48, 1528, 1560, 2185
Cac8I	GCNNGC	7 cut(s)	278, 321, 464, 491, 521, 597, 933
CciI	TCATGA	1 cut(s)	1746
CfoI	GCGC	1 cut(s)	2058
Cfr10I	RCCGGY	3 cut(s)	319, 545, 2159
Cfr13I	GGNCC	3 cut(s)	9, 791, 1235
ClaI	ATCGAT	1 cut(s)	1902
CseI	GACGC	2 cut(s)	402, 1989
Csp6I	GTAC	5 cut(s)	469, 911, 1062, 1788, 2049
CspAI	ACCGGT	1 cut(s)	2159
CviQI	GTAC	5 cut(s)	469, 911, 1062, 1788, 2049
DdeI	CTNAG	3 cut(s)	741, 1683, 2052
Eam1104I	CTCTTC	5 cut(s)	256, 452, 1535, 1890, 2093
EarI	CTCTTC	5 cut(s)	256, 452, 1535, 1890, 2093
EciI	GGCGGA	3 cut(s)	175, 860, 2184
Ecl136II	GAGCTC	2 cut(s)	384, 1969
Eco130I	CCWWGG	4 cut(s)	606, 1700, 1761, 2063
Eco147I	AGGCCT	1 cut(s)	523
Eco24I	GRGCYC	3 cut(s)	386, 1962, 1971
Eco47I	GGWCC	1 cut(s)	791
Eco53kI	GAGCTC	2 cut(s)	384, 1969
Eco72I	CACGTG	1 cut(s)	272
EcoICRI	GAGCTC	2 cut(s)	384, 1969
EcoNI	CCTNNNNNAGG	1 cut(s)	124
EcoO109I	RGGNCCY	2 cut(s)	791, 1235
EcoRII	CCWGG	5 cut(s)	405, 533, 796, 1176, 1948
EcoT14I	CCWWGG	4 cut(s)	606, 1700, 1761, 2063
EcoT38I	GRGCYC	3 cut(s)	386, 1962, 1971
ErhI	CCWWGG	4 cut(s)	606, 1700, 1761, 2063
Esp3I	CGTCTC	1 cut(s)	244
FalI	AAGNNNNNCTT	2 cut(s)	800, 832
FaqI	GGGAC	1 cut(s)	1048
FauI	CCCGC	1 cut(s)	913
FauNDI	CATATG	2 cut(s)	855, 1002
FbaI	TGATCA	1 cut(s)	819
FblI	GTMKAC	1 cut(s)	1391
Fnu4HI	GCNGC	6 cut(s)	331, 411, 689, 968, 1829, 2034
FokI	GGATG	9 cut(s)	142, 466, 734, 860, 955, 1328, 1382, 1637, 1660
FriOI	GRGCYC	3 cut(s)	386, 1962, 1971
Fsp4HI	GCNGC	6 cut(s)	331, 411, 689, 968, 1829, 2034
FspBI	CTAG	7 cut(s)	834, 1088, 1325, 1458, 1487, 1509, 2187
GlaI	GCGC	1 cut(s)	2057
GluI	GCNGC	6 cut(s)	331, 411, 689, 968, 1829, 2034
GsaI	CCCAGC	1 cut(s)	1332
GsuI	CTGGAG	7 cut(s)	72, 152, 206, 443, 455, 819, 2027
HaeIII	GGCC	5 cut(s)	11, 276, 410, 523, 1237
HapII	CCGG	9 cut(s)	320, 354, 377, 446, 546, 592, 661, 712, 2160
HgaI	GACGC	2 cut(s)	402, 1989
HhaI	GCGC	1 cut(s)	2058
Hin6I	GCGC	1 cut(s)	2056
HinP1I	GCGC	1 cut(s)	2056
HpaII	CCGG	9 cut(s)	320, 354, 377, 446, 546, 592, 661, 712, 2160
HphI	GGTGA	3 cut(s)	1488, 1542, 1621
Hpy166II	GTNNAC	3 cut(s)	961, 1392, 1550
Hpy8I	GTNNAC	3 cut(s)	961, 1392, 1550
Hpy99I	CGWCG	8 cut(s)	267, 319, 340, 370, 373, 400, 418, 1359
HpyAV	CCTTC	4 cut(s)	1146, 1503, 1771, 1982
HpyCH4III	ACNGT	2 cut(s)	635, 1312
HpyCH4IV	ACGT	2 cut(s)	271, 395
HpyF10VI	GCNNNNNNNGC	7 cut(s)	472, 859, 1325, 1670, 1828, 1966, 2175
HpyF3I	CTNAG	3 cut(s)	741, 1683, 2052
HpySE526I	ACGT	2 cut(s)	271, 395
HspAI	GCGC	1 cut(s)	2056
KroI	GCCGGC	1 cut(s)	319
KroNI	GCCGGC	1 cut(s)	321
Ksp22I	TGATCA	1 cut(s)	819
LguI	GCTCTTC	1 cut(s)	452
LmnI	GCTCC	9 cut(s)	44, 162, 381, 418, 424, 1974, 1988, 2008, 2196
Lsp1109I	GCAGC	4 cut(s)	675, 979, 1840, 2020
LweI	GCATC	9 cut(s)	933, 1294, 1306, 1354, 1360, 1651, 1682, 1858, 1894
MaeI	CTAG	7 cut(s)	834, 1088, 1325, 1458, 1487, 1509, 2187
MaeII	ACGT	2 cut(s)	271, 395
MaeIII	GTNAC	5 cut(s)	122, 1171, 1438, 1636, 2182
MflI	RGATCY	4 cut(s)	586, 1483, 1489, 1575
MhlI	GDGCHC	4 cut(s)	159, 386, 1962, 1971
MlyI	GAGTC	2 cut(s)	1373, 1478
MmeI	TCCRAC	5 cut(s)	255, 318, 396, 1072, 1890
MreI	CGCCGGCG	1 cut(s)	319
MroNI	GCCGGC	1 cut(s)	319
MroXI	GAANNNNTTC	1 cut(s)	292
MseI	TTAA	3 cut(s)	87, 645, 2118
MslI	CAYNNNNRTG	2 cut(s)	1249, 1555
MspA1I	CMGCKG	1 cut(s)	2005
MspI	CCGG	9 cut(s)	320, 354, 377, 446, 546, 592, 661, 712, 2160
MspR9I	CCNGG	7 cut(s)	378, 407, 535, 713, 798, 1178, 1950
MvaI	CCWGG	5 cut(s)	407, 535, 798, 1178, 1950
MvnI	CGCG	2 cut(s)	413, 753
MwoI	GCNNNNNNNGC	7 cut(s)	472, 859, 1325, 1670, 1828, 1966, 2175
NaeI	GCCGGC	1 cut(s)	321
NciI	CCSGG	2 cut(s)	378, 713
NcoI	CCATGG	2 cut(s)	1700, 1761
NdeI	CATATG	2 cut(s)	855, 1002
NgoMIV	GCCGGC	1 cut(s)	319
NlaIV	GGNNCC	2 cut(s)	1236, 2192
NmeAIII	GCCGAG	1 cut(s)	365
NmuCI	GTSAC	1 cut(s)	1171
NspI	RCATGY	3 cut(s)	967, 1254, 1390
NspV	TTCGAA	1 cut(s)	2108
OliI	CACNNNNGTG	1 cut(s)	1555
PagI	TCATGA	1 cut(s)	1746
PasI	CCCWGGG	1 cut(s)	1177
PceI	AGGCCT	1 cut(s)	523
PciI	ACATGT	1 cut(s)	1250
PciSI	GCTCTTC	1 cut(s)	452
PcsI	WCGNNNNNNNCGW	3 cut(s)	268, 320, 392
PdiI	GCCGGC	1 cut(s)	321
PdmI	GAANNNNTTC	1 cut(s)	292
PfeI	GAWTC	9 cut(s)	65, 325, 373, 1132, 1705, 1792, 1805, 1945, 2074
Pfl23II	CGTACG	1 cut(s)	1787
PfoI	TCCNGGA	1 cut(s)	796
PinAI	ACCGGT	1 cut(s)	2159
PkrI	GCNGC	6 cut(s)	332, 412, 690, 969, 1830, 2035
Ple19I	CGATCG	1 cut(s)	80
PleI	GAGTC	2 cut(s)	1373, 1477
PmaCI	CACGTG	1 cut(s)	272
PmlI	CACGTG	1 cut(s)	272
PpsI	GAGTC	2 cut(s)	1373, 1477
Ppu21I	YACGTR	1 cut(s)	272
PpuMI	RGGWCCY	1 cut(s)	791
PscI	ACATGT	1 cut(s)	1250
PshBI	ATTAAT	1 cut(s)	645
PsiI	TTATAA	1 cut(s)	1019
Psp124BI	GAGCTC	2 cut(s)	386, 1971
Psp5II	RGGWCCY	1 cut(s)	791
Psp6I	CCWGG	5 cut(s)	405, 533, 796, 1176, 1948
PspCI	CACGTG	1 cut(s)	272
PspFI	CCCAGC	1 cut(s)	1328
PspGI	CCWGG	5 cut(s)	405, 533, 796, 1176, 1948
PspLI	CGTACG	1 cut(s)	1787
PspN4I	GGNNCC	2 cut(s)	1236, 2192
PspPI	GGNCC	3 cut(s)	9, 791, 1235
PspPPI	RGGWCCY	1 cut(s)	791
PsuI	RGATCY	4 cut(s)	586, 1483, 1489, 1575
PvuI	CGATCG	1 cut(s)	80
PvuII	CAGCTG	1 cut(s)	2005
RsaI	GTAC	5 cut(s)	470, 912, 1063, 1789, 2050
RsaNI	GTAC	5 cut(s)	469, 911, 1062, 1788, 2049
RseI	CAYNNNNRTG	2 cut(s)	1249, 1555
SacI	GAGCTC	2 cut(s)	386, 1971
SapI	GCTCTTC	1 cut(s)	452
SaqAI	TTAA	3 cut(s)	87, 645, 2118
SatI	GCNGC	6 cut(s)	331, 411, 689, 968, 1829, 2034
Sau96I	GGNCC	3 cut(s)	9, 791, 1235
ScaI	AGTACT	1 cut(s)	1063
SchI	GAGTC	2 cut(s)	1373, 1478
ScrFI	CCNGG	7 cut(s)	378, 407, 535, 713, 798, 1178, 1950
SduI	GDGCHC	4 cut(s)	159, 386, 1962, 1971
SfaNI	GCATC	9 cut(s)	933, 1294, 1306, 1354, 1360, 1651, 1682, 1858, 1894
SfuI	TTCGAA	1 cut(s)	2108
SgrAI	CRCCGGYG	2 cut(s)	319, 545
SinI	GGWCC	1 cut(s)	791
SmiMI	CAYNNNNRTG	2 cut(s)	1249, 1555
SmlI	CTYRAG	1 cut(s)	1619
SmoI	CTYRAG	1 cut(s)	1619
SseBI	AGGCCT	1 cut(s)	523
SsiI	CCGC	8 cut(s)	186, 331, 411, 751, 845, 920, 1367, 2169
SspMI	CTAG	7 cut(s)	834, 1088, 1325, 1458, 1487, 1509, 2187
SstI	GAGCTC	2 cut(s)	386, 1971
StuI	AGGCCT	1 cut(s)	523
StyD4I	CCNGG	7 cut(s)	376, 405, 533, 711, 796, 1176, 1948
StyI	CCWWGG	4 cut(s)	606, 1700, 1761, 2063
TaaI	ACNGT	2 cut(s)	635, 1312
TaiI	ACGT	2 cut(s)	274, 398
TaqI	TCGA	8 cut(s)	265, 371, 884, 1285, 1902, 1921, 1932, 2108
TatI	WGTACW	2 cut(s)	468, 1061
TauI	GCSGC	2 cut(s)	333, 413
TfiI	GAWTC	9 cut(s)	65, 325, 373, 1132, 1705, 1792, 1805, 1945, 2074
Tru1I	TTAA	3 cut(s)	87, 645, 2118
Tru9I	TTAA	3 cut(s)	87, 645, 2118
TscAI	CASTG	4 cut(s)	55, 1528, 1560, 2185
TseFI	GTSAC	1 cut(s)	1171
TseI	GCWGC	4 cut(s)	688, 967, 1828, 2033
Tsp45I	GTSAC	1 cut(s)	1171
TspDTI	ATGAA	9 cut(s)	470, 872, 1041, 1200, 1280, 1641, 1703, 1763, 2147
TspRI	CASTG	4 cut(s)	55, 1528, 1560, 2185
VpaK11BI	GGWCC	1 cut(s)	791
VspI	ATTAAT	1 cut(s)	645
XagI	CCTNNNNNAGG	1 cut(s)	124
XapI	RAATTY	3 cut(s)	1280, 1721, 2041
XbaI	TCTAGA	2 cut(s)	1486, 1508
XceI	RCATGY	3 cut(s)	967, 1254, 1390
XmiI	GTMKAC	1 cut(s)	1391
XmnI	GAANNNNTTC	1 cut(s)	292
XspI	CTAG	7 cut(s)	834, 1088, 1325, 1458, 1487, 1509, 2187
ZrmI	AGTACT	1 cut(s)	1063

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.