RchiOBHm_Chr1g0362751

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0016494
Physical Location & Seq
Reverse (-)
54359300 .. 54360038
739 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 228 bp
ATGAAGGAAGACCAAAGCAACAGCAGCAGCAACAGAAACTTCTGCAGTAAGCACGTGCAAGAACAAAACAGCAGCAACAGCAACTTCTGCAGTAAGCACGTGCGAGACCCGTGCAGATCGTTTGGGCGGAGATGCAGTATGCTGGTGAAGGAGCAAAGGGCAAGGTTCTATATACTCCGGCGCTGCATCACCATGTTAATGTGCTGGCGTGAGTGTGGTGATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

75

Amino Acids

8.91

Weight (kDa)

9.39

Isoelectric Point (pI)

69.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 50 - 68 3.7e-11 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 127
AclWI GGATC 1 cut(s) 215
AcvI CACGTG 2 cut(s) 55, 100
Alw26I GTCTC 1 cut(s) 99
AlwI GGATC 1 cut(s) 215
ApeKI GCWGC 4 cut(s) 24, 27, 72, 183
AspLEI GCGC 1 cut(s) 183
AsuHPI GGTGA 2 cut(s) 157, 181
BbrPI CACGTG 2 cut(s) 55, 100
BbsI GAAGAC 1 cut(s) 15
BbvI GCAGC 4 cut(s) 36, 39, 84, 170
BcgI CGANNNNNNTGC 2 cut(s) 93, 127
BcoDI GTCTC 1 cut(s) 99
BfmI CTRYAG 2 cut(s) 43, 88
BfoI RGCGCY 1 cut(s) 184
BisI GCNGC 4 cut(s) 25, 28, 73, 184
BlsI GCNGC 4 cut(s) 26, 29, 74, 185
BmsI GCATC 2 cut(s) 122, 195
BpiI GAAGAC 1 cut(s) 15
BsaAI YACGTR 2 cut(s) 55, 100
BsaI GGTCTC 1 cut(s) 99
BsaXI ACNNNNNCTCC 2 cut(s) 121, 151
BseXI GCAGC 4 cut(s) 36, 39, 84, 170
BsgI GTGCAG 1 cut(s) 133
BsiSI CCGG 1 cut(s) 178
BsmAI GTCTC 1 cut(s) 99
Bso31I GGTCTC 1 cut(s) 99
Bsp143I GATC 2 cut(s) 116, 220
BspACI CCGC 1 cut(s) 127
BspMAI CTGCAG 2 cut(s) 47, 92
BspPI GGATC 1 cut(s) 215
BspTNI GGTCTC 1 cut(s) 99
BssMI GATC 2 cut(s) 116, 220
BstAPI GCANNNNNTGC 1 cut(s) 87
BstBAI YACGTR 2 cut(s) 55, 100
BstC8I GCNNGC 1 cut(s) 206
BstH2I RGCGCY 1 cut(s) 184
BstHHI GCGC 1 cut(s) 183
BstKTI GATC 2 cut(s) 119, 223
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 2 cut(s) 116, 220
BstMWI GCNNNNNNNGC 3 cut(s) 24, 78, 87
BstSFI CTRYAG 2 cut(s) 43, 88
BstV1I GCAGC 4 cut(s) 36, 39, 84, 170
BstV2I GAAGAC 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 206
CfoI GCGC 1 cut(s) 183
CviAII CATG 2 cut(s) 193, 225
DpnI GATC 2 cut(s) 118, 222
DpnII GATC 2 cut(s) 116, 220
EciI GGCGGA 1 cut(s) 142
Eco31I GGTCTC 1 cut(s) 99
Eco72I CACGTG 2 cut(s) 55, 100
FaeI CATG 2 cut(s) 196, 228
FaiI YATR 5 cut(s) 140, 171, 173, 194, 226
FatI CATG 2 cut(s) 192, 224
Fnu4HI GCNGC 4 cut(s) 25, 28, 73, 184
Fsp4HI GCNGC 4 cut(s) 25, 28, 73, 184
GlaI GCGC 1 cut(s) 182
GluI GCNGC 4 cut(s) 25, 28, 73, 184
HaeII RGCGCY 1 cut(s) 184
HapII CCGG 1 cut(s) 178
HhaI GCGC 1 cut(s) 183
Hin1II CATG 2 cut(s) 196, 228
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
HpaII CCGG 1 cut(s) 178
HphI GGTGA 2 cut(s) 157, 181
HpyAV CCTTC 1 cut(s) 142
HpyCH4IV ACGT 2 cut(s) 54, 99
HpyCH4V TGCA 6 cut(s) 45, 58, 90, 114, 135, 186
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 78, 87
HpySE526I ACGT 2 cut(s) 54, 99
Hsp92II CATG 2 cut(s) 196, 228
HspAI GCGC 1 cut(s) 181
Kzo9I GATC 2 cut(s) 116, 220
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 3 cut(s) 128, 190, 191
Lsp1109I GCAGC 4 cut(s) 36, 39, 84, 170
LweI GCATC 2 cut(s) 122, 195
MaeII ACGT 2 cut(s) 54, 99
MalI GATC 2 cut(s) 118, 222
MboI GATC 2 cut(s) 116, 220
MboII GAAGA 1 cut(s) 20
MseI TTAA 1 cut(s) 197
MslI CAYNNNNRTG 2 cut(s) 191, 197
MspI CCGG 1 cut(s) 178
MwoI GCNNNNNNNGC 3 cut(s) 24, 78, 87
NdeII GATC 2 cut(s) 116, 220
NlaIII CATG 2 cut(s) 196, 228
PkrI GCNGC 4 cut(s) 26, 29, 74, 185
PmaCI CACGTG 2 cut(s) 55, 100
PmlI CACGTG 2 cut(s) 55, 100
Ppu21I YACGTR 2 cut(s) 55, 100
PspCI CACGTG 2 cut(s) 55, 100
PstI CTGCAG 2 cut(s) 47, 92
RseI CAYNNNNRTG 2 cut(s) 191, 197
SaqAI TTAA 1 cut(s) 197
SatI GCNGC 4 cut(s) 25, 28, 73, 184
Sau3AI GATC 2 cut(s) 116, 220
SetI ASST 3 cut(s) 57, 102, 167
SfaNI GCATC 2 cut(s) 122, 195
SfcI CTRYAG 2 cut(s) 43, 88
SmiMI CAYNNNNRTG 2 cut(s) 191, 197
SsiI CCGC 1 cut(s) 127
TaiI ACGT 2 cut(s) 57, 102
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TseI GCWGC 4 cut(s) 24, 27, 72, 183
TspDTI ATGAA 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.