RchiOBHm_Chr1g0363461

Tryptophan/tyrosine permease family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0013714
Physical Location & Seq
Reverse (-)
54848887 .. 54851627
2741 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1536 bp
ATGGATTCAAATTGCATCACTTCATCTACCTCCTTGCATACGAGAAGCCACTTCAACCCAAAGACAAACCACTCCTGGGCTAGACTACATCATCAAAATAGCACCAGTAATTTCAGGATCTATCATGCTTGTTCCTATAGCCAACAACCGCAGCAGCAGCAGCAGCAAACTTCATCGTTTACTCGAAATGGTTTTGTCAAAAAGGCAAAGACAGGTGTTATACGGTTGAGCTTGGATGTAAAGCCCATCAAGGATCCCAATAAGAAGAAAGGAACTATTGCAGGGGCAGTTGCTTTGATTATTGGTACTAGTATAGGCTCAGGGATTCTTGCACTCCCAGAGAAAGCTTCTCCAGCGGGATTTATTCCAAGTTCAATATCGATAGTAATATGTTGGGGATTTCTCCTGATTGAGGCTCTTTTACTGATTGAAATCAATGTAAGCATGAGGAGGAGGAAGGGAAAGGAAGACAAAGAGAATGAGTTGGAGATCATTTCAATTAGGACTATGGCCCAAGACACTCTAGGAGACTGGGGTGGAACTCTAGCCTCTGTGGTTTACATTTTCTTAGGTTATACTTCCATGATTTCTTACAGTTCCAAATCTGGGGAGATCCTTTTTCACTTGATCAATCTCCCAGCTCCAGTTTCTGGCATCTTTTTCACTTCAGTTTTCACTCTTCTCATTTCCATCGGTGGGACTCAAGCTACGGATCAAGTTAACCAATTGCTCACTGCTTCCATGATAGGTTTACTAGTAGCAATAGAGGTGCTAGCAGTTGTGTTTGGAGGTTGGTCAGGACTGCAGGGAAGTGGAGATTGGGGAAAAGTCCCACCCGCAATACCTGTCATAATATTTTCTTTGGTGTATCATGATCTAGCACCTGTTCTTTGTGCATATTTGGGCAGTGATCTCAAACGCTTAAGGATTTCGGTGGTTCTTGGTAGTCTTGTTCCATTGCTAGGACTACTTCTTTGGGATGCAATTGCTCTTGGCCTATCTGCCCAAGCCGACCAAATGGTTGACCCTGTTGAATTGCTTATGAGGGTGAAATGGAGTGGGGTTTCATATATGGTAGAAGCCTTTTCTCTCCTTGCAGTTGGAACATCACTAATTGGCACTCTTCTTGGCTTCTCTGAGTTTTTCAAAGAACAACTAAATAGCCTCTCATCGAATTCTCCCCTCACACAAACACAGAAACCAAACATGCCCTTTGGTCTGAGGAAATGGTGGGCAGGGAATAAAGTTAGCTTCACATCAGTGGCATTGGTTGTTGTTCCATCTCTTTTTGTGTCGACTACTGTTCCGGATGCATTCTCTACTGCCACAGACGTTGCTGGAGGGTATTGTATGACAATGCTATATGGAGTTCTTCCACCAGCAATGGCTTGGGCAATGCATAATAAAGAAAGAGACAATGCTTCTGATCAAAAGACTTTATCGAGAGCGAGGCCAGTACTGGTGGCGGTAGGACTCCTTGCTTGCGGAATTGTGGCAGAGCAAATCCTTCAAGACATCCTCATATTTCAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Trp_Tyr_perm

Protein Analysis

511

Amino Acids

55.28

Weight (kDa)

8.89

Isoelectric Point (pI)

39.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 90 - 270 1.6e-07 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 92 - 490 2.6e-47 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013714)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g19650 FvH4_7g19650
malus_domestica MD07G1175000.v1.1
prunus_persica Prupe.2G214200_v2.0.a1 Prupe.2G214200_v2.0.a1 Prupe.2G214200_v2.0.a1
pyrus_communis pycom07g16940
rosa_chinensis RchiOBHm_Chr1g0363461
rosa_laevigata RLG00000027564
rosa_multiflora Rmu_sc0004458.1_g000002
rosa_roxburghii Rroxscaffold_4G00293160
rosa_rugosa Rorug01G0306900 Rorug01G0307000
rosa_samantha Rh1AG316100 Rh1BG279400 Rh1CG295700 Rh1DG310500
rosa_wichuraiana Rw1G027990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 650
AccI GTMKAC 1 cut(s) 1295
AccIII TCCGGA 1 cut(s) 1306
AciI CCGC 5 cut(s) 149, 356, 837, 1466, 1485
AclWI GGATC 5 cut(s) 125, 248, 261, 607, 720
AcsI RAATTY 1 cut(s) 1174
AcuI CTGAAG 1 cut(s) 651
AfaI GTAC 2 cut(s) 307, 1458
AfiI CCNNNNNNNGG 6 cut(s) 76, 412, 606, 650, 696, 962
AflII CTTAAG 1 cut(s) 922
AgsI TTSAA 9 cut(s) 9, 55, 375, 431, 498, 1034, 1147, 1511, 1529
AhlI ACTAGT 2 cut(s) 308, 754
AjnI CCWGG 1 cut(s) 74
AjuI GAANNNNNNNTTGG 2 cut(s) 802, 834
AleI CACNNNNGTG 1 cut(s) 1259
AluBI AGCT 5 cut(s) 231, 347, 641, 707, 1251
AluI AGCT 5 cut(s) 231, 347, 641, 707, 1251
Alw26I GTCTC 2 cut(s) 522, 1407
AlwI GGATC 5 cut(s) 125, 248, 261, 607, 720
AlwNI CAGNNNCTG 1 cut(s) 650
Aor13HI TCCGGA 1 cut(s) 1306
AoxI GGCC 3 cut(s) 510, 994, 1451
ApeKI GCWGC 5 cut(s) 151, 154, 157, 160, 163
ApoI RAATTY 1 cut(s) 1174
ArsI GACNNNNNNTTYG 2 cut(s) 957, 989
AspS9I GGNCC 1 cut(s) 511
AsuHPI GGTGA 1 cut(s) 1060
AsuNHI GCTAGC 1 cut(s) 772
BamHI GGATCC 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 474
BbvI GCAGC 5 cut(s) 163, 166, 169, 172, 175
BccI CCATC 3 cut(s) 254, 698, 1288
BciT130I CCWGG 1 cut(s) 76
BclI TGATCA 2 cut(s) 627, 1426
BcoDI GTCTC 2 cut(s) 522, 1407
BcuI ACTAGT 2 cut(s) 308, 754
BfaI CTAG 8 cut(s) 81, 309, 524, 545, 755, 773, 878, 962
BfmI CTRYAG 2 cut(s) 136, 803
BfrI CTTAAG 1 cut(s) 922
BisI GCNGC 5 cut(s) 152, 155, 158, 161, 164
BlsI GCNGC 5 cut(s) 153, 156, 159, 162, 165
BmcAI AGTACT 1 cut(s) 1458
Bme1390I CCNGG 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 511
BmiI GGNNCC 1 cut(s) 255
BmrFI CCNGG 1 cut(s) 76
BmrI ACTGGG 1 cut(s) 541
BmsI GCATC 4 cut(s) 24, 663, 970, 1300
BmtI GCTAGC 1 cut(s) 776
BmuI ACTGGG 1 cut(s) 541
BpiI GAAGAC 1 cut(s) 474
BpmI CTGGAG 3 cut(s) 336, 627, 1359
Bpu10I CCTNAGC 1 cut(s) 319
BpuEI CTTGAG 1 cut(s) 687
Bsa29I ATCGAT 1 cut(s) 380
BsaBI GATNNNNATC 1 cut(s) 431
BsaJI CCNNGG 1 cut(s) 75
BsaWI WCCGGW 1 cut(s) 1306
Bsc4I CCNNNNNNNGG 6 cut(s) 76, 412, 606, 650, 696, 962
Bse1I ACTGG 5 cut(s) 105, 536, 644, 1454, 1464
Bse3DI GCAATG 3 cut(s) 956, 1389, 1401
Bse8I GATNNNNATC 1 cut(s) 431
BseAI TCCGGA 1 cut(s) 1306
BseBI CCWGG 1 cut(s) 76
BseCI ATCGAT 1 cut(s) 380
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 4 cut(s) 241, 985, 1315, 1515
BseJI GATNNNNATC 1 cut(s) 431
BseLI CCNNNNNNNGG 6 cut(s) 76, 412, 606, 650, 696, 962
BseMI GCAATG 3 cut(s) 956, 1389, 1401
BseMII CTCAG 3 cut(s) 333, 1128, 1211
BseNI ACTGG 5 cut(s) 105, 536, 644, 1454, 1464
BseRI GAGGAG 2 cut(s) 463, 466
BseXI GCAGC 5 cut(s) 163, 166, 169, 172, 175
BseYI CCCAGC 1 cut(s) 637
BshFI GGCC 3 cut(s) 512, 996, 1453
BshVI ATCGAT 1 cut(s) 380
BsiSI CCGG 1 cut(s) 1307
BslFI GGGAC 2 cut(s) 712, 815
BslI CCNNNNNNNGG 6 cut(s) 76, 412, 606, 650, 696, 962
BsmAI GTCTC 2 cut(s) 522, 1407
BsmFI GGGAC 2 cut(s) 712, 815
BsmI GAATGC 1 cut(s) 1313
BsnI GGCC 3 cut(s) 512, 996, 1453
Bsp13I TCCGGA 1 cut(s) 1306
Bsp143I GATC 9 cut(s) 117, 253, 489, 612, 627, 712, 874, 910, 1426
BspACI CCGC 5 cut(s) 149, 356, 837, 1466, 1485
BspANI GGCC 3 cut(s) 512, 996, 1453
BspCNI CTCAG 3 cut(s) 332, 1129, 1212
BspDI ATCGAT 1 cut(s) 380
BspEI TCCGGA 1 cut(s) 1306
BspHI TCATGA 1 cut(s) 871
BspLI GGNNCC 1 cut(s) 255
BspMAI CTGCAG 1 cut(s) 807
BspOI GCTAGC 1 cut(s) 776
BspPI GGATC 5 cut(s) 125, 248, 261, 607, 720
BspTI CTTAAG 1 cut(s) 922
BsrDI GCAATG 3 cut(s) 956, 1389, 1401
BsrI ACTGG 5 cut(s) 105, 536, 644, 1454, 1464
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 9 cut(s) 117, 253, 489, 612, 627, 712, 874, 910, 1426
Bst2UI CCWGG 1 cut(s) 76
Bst4CI ACNGT 3 cut(s) 225, 596, 1303
Bst6I CTCTTC 2 cut(s) 684, 1128
BstAFI CTTAAG 1 cut(s) 922
BstC8I GCNNGC 2 cut(s) 774, 1483
BstDEI CTNAG 4 cut(s) 319, 568, 1137, 1220
BstENI CCTNNNNNAGG 1 cut(s) 410
BstF5I GGATG 4 cut(s) 241, 985, 1315, 1515
BstKTI GATC 9 cut(s) 120, 256, 492, 615, 630, 715, 877, 913, 1429
BstMAI GTCTC 2 cut(s) 522, 1407
BstMBI GATC 9 cut(s) 117, 253, 489, 612, 627, 712, 874, 910, 1426
BstMWI GCNNNNNNNGC 4 cut(s) 157, 160, 163, 353
BstNI CCWGG 1 cut(s) 76
BstNSI RCATGY 1 cut(s) 1210
BstSCI CCNGG 1 cut(s) 74
BstSFI CTRYAG 2 cut(s) 136, 803
BstV1I GCAGC 5 cut(s) 163, 166, 169, 172, 175
BstV2I GAAGAC 1 cut(s) 474
BstX2I RGATCY 3 cut(s) 117, 253, 612
BstYI RGATCY 3 cut(s) 117, 253, 612
Bsu15I ATCGAT 1 cut(s) 380
BsuRI GGCC 3 cut(s) 512, 996, 1453
BsuTUI ATCGAT 1 cut(s) 380
BtsCI GGATG 4 cut(s) 241, 985, 1315, 1515
BtsI GCAGTG 2 cut(s) 732, 913
BtsIMutI CAGTG 3 cut(s) 732, 913, 1266
Cac8I GCNNGC 2 cut(s) 774, 1483
CaiI CAGNNNCTG 1 cut(s) 650
CciI TCATGA 1 cut(s) 871
Cfr13I GGNCC 1 cut(s) 511
ClaI ATCGAT 1 cut(s) 380
Csp6I GTAC 2 cut(s) 306, 1457
CspCI CAANNNNNGTGG 2 cut(s) 1315, 1350
CviAII CATG 6 cut(s) 125, 445, 583, 742, 872, 1207
CviQI GTAC 2 cut(s) 306, 1457
DdeI CTNAG 4 cut(s) 319, 568, 1137, 1220
DpnI GATC 9 cut(s) 119, 255, 491, 614, 629, 714, 876, 912, 1428
DpnII GATC 9 cut(s) 117, 253, 489, 612, 627, 712, 874, 910, 1426
Eam1104I CTCTTC 2 cut(s) 684, 1128
EarI CTCTTC 2 cut(s) 684, 1128
Eco57I CTGAAG 1 cut(s) 651
EcoNI CCTNNNNNAGG 1 cut(s) 410
EcoRI GAATTC 1 cut(s) 1174
EcoRII CCWGG 1 cut(s) 74
EcoT22I ATGCAT 2 cut(s) 1315, 1401
FaeI CATG 6 cut(s) 128, 448, 586, 745, 875, 1210
FaqI GGGAC 2 cut(s) 712, 815
FatI CATG 6 cut(s) 124, 444, 582, 741, 871, 1206
FauI CCCGC 2 cut(s) 349, 844
FbaI TGATCA 2 cut(s) 627, 1426
FblI GTMKAC 1 cut(s) 1295
Fnu4HI GCNGC 5 cut(s) 152, 155, 158, 161, 164
FokI GGATG 4 cut(s) 248, 992, 1322, 1502
Fsp4HI GCNGC 5 cut(s) 152, 155, 158, 161, 164
FspBI CTAG 8 cut(s) 81, 309, 524, 545, 755, 773, 878, 962
GluI GCNGC 5 cut(s) 152, 155, 158, 161, 164
GsaI CCCAGC 1 cut(s) 641
GsuI CTGGAG 3 cut(s) 336, 627, 1359
HaeIII GGCC 3 cut(s) 512, 996, 1453
HapII CCGG 1 cut(s) 1307
Hin1II CATG 6 cut(s) 128, 448, 586, 745, 875, 1210
HincII GTYRAC 3 cut(s) 721, 1024, 1296
HindII GTYRAC 3 cut(s) 721, 1024, 1296
HindIII AAGCTT 1 cut(s) 345
HinfI GANTC 4 cut(s) 5, 325, 700, 1473
HpaI GTTAAC 1 cut(s) 721
HpaII CCGG 1 cut(s) 1307
HphI GGTGA 1 cut(s) 1060
Hpy166II GTNNAC 6 cut(s) 180, 559, 721, 752, 1024, 1296
Hpy188I TCNGA 3 cut(s) 1138, 1221, 1426
Hpy188III TCNNGA 7 cut(s) 115, 406, 798, 872, 1307, 1443, 1511
Hpy8I GTNNAC 6 cut(s) 180, 559, 721, 752, 1024, 1296
HpyAV CCTTC 2 cut(s) 451, 1517
HpyCH4III ACNGT 3 cut(s) 225, 596, 1303
HpyCH4IV ACGT 1 cut(s) 1332
HpyF10VI GCNNNNNNNGC 4 cut(s) 157, 160, 163, 353
HpyF3I CTNAG 4 cut(s) 319, 568, 1137, 1220
HpySE526I ACGT 1 cut(s) 1332
Hsp92II CATG 6 cut(s) 128, 448, 586, 745, 875, 1210
Kpn2I TCCGGA 1 cut(s) 1306
Ksp22I TGATCA 2 cut(s) 627, 1426
KspAI GTTAAC 1 cut(s) 721
Kzo9I GATC 9 cut(s) 117, 253, 489, 612, 627, 712, 874, 910, 1426
LmnI GCTCC 1 cut(s) 646
Lsp1109I GCAGC 5 cut(s) 163, 166, 169, 172, 175
LweI GCATC 4 cut(s) 24, 663, 970, 1300
MaeI CTAG 8 cut(s) 81, 309, 524, 545, 755, 773, 878, 962
MaeII ACGT 1 cut(s) 1332
MalI GATC 9 cut(s) 119, 255, 491, 614, 629, 714, 876, 912, 1428
MboI GATC 9 cut(s) 117, 253, 489, 612, 627, 712, 874, 910, 1426
MboII GAAGA 5 cut(s) 277, 479, 671, 1115, 1364
MfeI CAATTG 3 cut(s) 725, 984, 1529
MflI RGATCY 3 cut(s) 117, 253, 612
MlyI GAGTC 2 cut(s) 694, 1467
MmeI TCCRAC 2 cut(s) 465, 1081
Mph1103I ATGCAT 2 cut(s) 1315, 1401
MroI TCCGGA 1 cut(s) 1306
MseI TTAA 2 cut(s) 720, 923
MslI CAYNNNNRTG 1 cut(s) 1259
MspA1I CMGCKG 1 cut(s) 356
MspCI CTTAAG 1 cut(s) 922
MspI CCGG 1 cut(s) 1307
MspR9I CCNGG 1 cut(s) 76
MunI CAATTG 3 cut(s) 725, 984, 1529
Mva1269I GAATGC 1 cut(s) 1313
MvaI CCWGG 1 cut(s) 76
MwoI GCNNNNNNNGC 4 cut(s) 157, 160, 163, 353
NdeII GATC 9 cut(s) 117, 253, 489, 612, 627, 712, 874, 910, 1426
NheI GCTAGC 1 cut(s) 772
NlaIII CATG 6 cut(s) 128, 448, 586, 745, 875, 1210
NlaIV GGNNCC 1 cut(s) 255
NsiI ATGCAT 2 cut(s) 1315, 1401
NspI RCATGY 1 cut(s) 1210
OliI CACNNNNGTG 1 cut(s) 1259
PagI TCATGA 1 cut(s) 871
PctI GAATGC 1 cut(s) 1313
PfeI GAWTC 2 cut(s) 5, 325
PflMI CCANNNNNTGG 1 cut(s) 650
PkrI GCNGC 5 cut(s) 153, 156, 159, 162, 165
PleI GAGTC 2 cut(s) 694, 1467
PpsI GAGTC 2 cut(s) 694, 1467
Psp6I CCWGG 1 cut(s) 74
PspFI CCCAGC 1 cut(s) 637
PspGI CCWGG 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 255
PspPI GGNCC 1 cut(s) 511
PstI CTGCAG 1 cut(s) 807
PstNI CAGNNNCTG 1 cut(s) 650
PsuI RGATCY 3 cut(s) 117, 253, 612
RsaI GTAC 2 cut(s) 307, 1458
RsaNI GTAC 2 cut(s) 306, 1457
RseI CAYNNNNRTG 1 cut(s) 1259
SalI GTCGAC 1 cut(s) 1294
SaqAI TTAA 2 cut(s) 720, 923
SatI GCNGC 5 cut(s) 152, 155, 158, 161, 164
Sau3AI GATC 9 cut(s) 117, 253, 489, 612, 627, 712, 874, 910, 1426
Sau96I GGNCC 1 cut(s) 511
ScaI AGTACT 1 cut(s) 1458
SchI GAGTC 2 cut(s) 694, 1467
ScrFI CCNGG 1 cut(s) 76
SfaNI GCATC 4 cut(s) 24, 663, 970, 1300
SfcI CTRYAG 2 cut(s) 136, 803
SmiMI CAYNNNNRTG 1 cut(s) 1259
SmlI CTYRAG 2 cut(s) 702, 922
SmoI CTYRAG 2 cut(s) 702, 922
SpeI ACTAGT 2 cut(s) 308, 754
SsiI CCGC 5 cut(s) 149, 356, 837, 1466, 1485
SspI AATATT 1 cut(s) 855
SspMI CTAG 8 cut(s) 81, 309, 524, 545, 755, 773, 878, 962
StyD4I CCNGG 1 cut(s) 74
TaaI ACNGT 3 cut(s) 225, 596, 1303
TaiI ACGT 1 cut(s) 1335
TaqI TCGA 5 cut(s) 184, 380, 1172, 1295, 1442
TatI WGTACW 1 cut(s) 1456
TfiI GAWTC 2 cut(s) 5, 325
Tru1I TTAA 2 cut(s) 720, 923
Tru9I TTAA 2 cut(s) 720, 923
TscAI CASTG 3 cut(s) 739, 913, 1266
TseI GCWGC 5 cut(s) 151, 154, 157, 160, 163
TspDTI ATGAA 3 cut(s) 12, 162, 1056
TspGWI ACGGA 1 cut(s) 725
TspRI CASTG 3 cut(s) 739, 913, 1266
Van91I CCANNNNNTGG 1 cut(s) 650
Vha464I CTTAAG 1 cut(s) 922
XagI CCTNNNNNAGG 1 cut(s) 410
XapI RAATTY 1 cut(s) 1174
XceI RCATGY 1 cut(s) 1210
XcmI CCANNNNNNNNNTGG 1 cut(s) 1386
XmiI GTMKAC 1 cut(s) 1295
XspI CTAG 8 cut(s) 81, 309, 524, 545, 755, 773, 878, 962
ZrmI AGTACT 1 cut(s) 1458
Zsp2I ATGCAT 2 cut(s) 1315, 1401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.