RchiOBHm_Chr1g0368881

Protein GUCD1-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0004784
Physical Location & Seq
Forward (+)
58854881 .. 58859911
5031 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 840 bp
ATGTGGCCTTCATATCTGCTGTTTAACAAGAGGGAAGATGTAGAAGCATCAGATGGTGAAAATTCTGATTTGGTAGAATCATACCCATTTGAACAGTCACCGAGAGATGGCAAATGCCGTCTTTCTGCCTTGCCATGCTCACACTTTGTTGAAGTCCCACACATAAACCAGCTATATTCTTGGGATTGTGGCCTCGCCTGCGTTCTGATGGTTTTTAGGACCGTTGGCATTGATAGCTGCGATATTCAGACATTGGCAGAGCTTTGTTGCACAAATAGCATTTGGACTGTTGATCTAGCATATCTGTTACAAAAGTTCTCTATTAGTTTTTCCTACTACACAGTAACATTTGGAGCAAACCCAAACTATTCTGGCGAGACATTTTACAAGGAGCAATTACCTAATGATTTGGTGCGAGTTGATACACTATTTCAAAAAGCACTGGAAGCTGGAATTAGGATAAAGTGCAGGTCAGTCAGTCGAGAAGAAATTTGTTTCTTGATTCTCTGTGGGAAATACATTGCCATAGTACTGGTTGATCAGTATAAGTTGAGCCCATCTAGTCAGGACAATGTTTTTATTTCAGACCGTTGTGGGAGCAACTCTGATTACACAGGTCATTATGTGATAATTTGTGGGTATGACACTGCTACGGATGAGTTTGAGATTAGAGATCCGGCCTGTTCAAGGAAACGTGAAAAAGTATCGTCAACATGCTTAGAAGCAGCCCGTAAATCCTTTGGTACTGATGAAGATCTTCTCTTGATCTCTTTGAGGAAGAGTAGGAAGCCAGATAGCCCCTCAATACAACTTTCTCGGAATGATAATATTAATTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Guanylate_cyc_2

Protein Analysis

279

Amino Acids

31.58

Weight (kDa)

4.97

Isoelectric Point (pI)

46.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C39_2 PF13529 51 - 227 2.8e-07 Peptidase_C39 like family
Guanylate_cyc_2 PF09778 52 - 256 2.4e-74 Guanylylate cyclase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 459
AclWI GGATC 1 cut(s) 668
AcsI RAATTY 2 cut(s) 61, 489
AfaI GTAC 2 cut(s) 531, 745
AfiI CCNNNNNNNGG 2 cut(s) 107, 687
AgsI TTSAA 4 cut(s) 92, 152, 434, 687
AluBI AGCT 4 cut(s) 172, 237, 262, 449
AluI AGCT 4 cut(s) 172, 237, 262, 449
Alw26I GTCTC 1 cut(s) 371
AlwI GGATC 1 cut(s) 668
AoxI GGCC 3 cut(s) 5, 190, 678
ApeKI GCWGC 2 cut(s) 237, 725
ApoI RAATTY 2 cut(s) 61, 489
AseI ATTAAT 1 cut(s) 831
Asp700I GAANNNNTTC 1 cut(s) 756
AspS9I GGNCC 1 cut(s) 219
AsuHPI GGTGA 2 cut(s) 68, 90
AvaII GGWCC 1 cut(s) 219
BanII GRGCYC 1 cut(s) 557
BbvI GCAGC 2 cut(s) 224, 737
BccI CCATC 4 cut(s) 47, 101, 202, 565
BceAI ACGGC 1 cut(s) 102
BclI TGATCA 1 cut(s) 538
BcoDI GTCTC 1 cut(s) 371
BfaI CTAG 2 cut(s) 296, 561
BfuAI ACCTGC 1 cut(s) 459
BglII AGATCT 1 cut(s) 754
BisI GCNGC 2 cut(s) 238, 726
BlsI GCNGC 2 cut(s) 239, 727
BmcAI AGTACT 1 cut(s) 531
Bme18I GGWCC 1 cut(s) 219
BmgT120I GGNCC 1 cut(s) 219
BmsI GCATC 1 cut(s) 56
BsaBI GATNNNNATC 1 cut(s) 753
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 687
Bse1I ACTGG 2 cut(s) 447, 537
Bse3DI GCAATG 1 cut(s) 519
Bse8I GATNNNNATC 1 cut(s) 753
BseGI GGATG 1 cut(s) 661
BseJI GATNNNNATC 1 cut(s) 753
BseLI CCNNNNNNNGG 2 cut(s) 107, 687
BseMI GCAATG 1 cut(s) 519
BseNI ACTGG 2 cut(s) 447, 537
BseXI GCAGC 2 cut(s) 224, 737
BsgI GTGCAG 1 cut(s) 487
BshFI GGCC 3 cut(s) 7, 192, 680
BsiSI CCGG 1 cut(s) 677
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 2 cut(s) 107, 687
BsmAI GTCTC 1 cut(s) 371
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 3 cut(s) 7, 192, 680
Bsp1286I GDGCHC 1 cut(s) 557
Bsp143I GATC 5 cut(s) 292, 538, 673, 754, 765
BspANI GGCC 3 cut(s) 7, 192, 680
BspMI ACCTGC 1 cut(s) 459
BspPI GGATC 1 cut(s) 668
BsrDI GCAATG 1 cut(s) 519
BsrI ACTGG 2 cut(s) 447, 537
BssMI GATC 5 cut(s) 292, 538, 673, 754, 765
Bst4CI ACNGT 5 cut(s) 96, 223, 289, 343, 590
Bst6I CTCTTC 1 cut(s) 773
BstC8I GCNNGC 1 cut(s) 199
BstDEI CTNAG 1 cut(s) 718
BstENI CCTNNNNNAGG 1 cut(s) 685
BstF5I GGATG 1 cut(s) 661
BstKTI GATC 5 cut(s) 295, 541, 676, 757, 768
BstMAI GTCTC 1 cut(s) 371
BstMBI GATC 5 cut(s) 292, 538, 673, 754, 765
BstMWI GCNNNNNNNGC 4 cut(s) 198, 234, 276, 446
BstNSI RCATGY 1 cut(s) 717
BstV1I GCAGC 2 cut(s) 224, 737
BstX2I RGATCY 2 cut(s) 673, 754
BstXI CCANNNNNNTGG 1 cut(s) 532
BstYI RGATCY 2 cut(s) 673, 754
BsuRI GGCC 3 cut(s) 7, 192, 680
BtsCI GGATG 1 cut(s) 661
BtsI GCAGTG 1 cut(s) 645
BtsIMutI CAGTG 2 cut(s) 440, 645
BveI ACCTGC 1 cut(s) 459
Cac8I GCNNGC 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 219
Csp6I GTAC 2 cut(s) 530, 744
CviAII CATG 2 cut(s) 135, 714
CviQI GTAC 2 cut(s) 530, 744
DdeI CTNAG 1 cut(s) 718
DpnI GATC 5 cut(s) 294, 540, 675, 756, 767
DpnII GATC 5 cut(s) 292, 538, 673, 754, 765
Eam1104I CTCTTC 1 cut(s) 773
EarI CTCTTC 1 cut(s) 773
Eco24I GRGCYC 1 cut(s) 557
Eco47I GGWCC 1 cut(s) 219
EcoNI CCTNNNNNAGG 1 cut(s) 685
EcoT38I GRGCYC 1 cut(s) 557
FaeI CATG 2 cut(s) 138, 717
FaqI GGGAC 1 cut(s) 140
FatI CATG 2 cut(s) 134, 713
FbaI TGATCA 1 cut(s) 538
Fnu4HI GCNGC 2 cut(s) 238, 726
FokI GGATG 1 cut(s) 668
FriOI GRGCYC 1 cut(s) 557
Fsp4HI GCNGC 2 cut(s) 238, 726
FspBI CTAG 2 cut(s) 296, 561
GluI GCNGC 2 cut(s) 238, 726
HaeIII GGCC 3 cut(s) 7, 192, 680
HapII CCGG 1 cut(s) 677
Hin1II CATG 2 cut(s) 138, 717
HincII GTYRAC 1 cut(s) 711
HindII GTYRAC 1 cut(s) 711
HinfI GANTC 2 cut(s) 77, 502
HpaII CCGG 1 cut(s) 677
HphI GGTGA 2 cut(s) 68, 90
Hpy166II GTNNAC 1 cut(s) 711
Hpy188I TCNGA 7 cut(s) 52, 67, 207, 249, 586, 607, 819
Hpy188III TCNNGA 5 cut(s) 482, 499, 566, 763, 837
Hpy8I GTNNAC 1 cut(s) 711
HpyAV CCTTC 1 cut(s) 18
HpyCH4III ACNGT 5 cut(s) 96, 223, 289, 343, 590
HpyCH4IV ACGT 1 cut(s) 694
HpyCH4V TGCA 2 cut(s) 270, 468
HpyF10VI GCNNNNNNNGC 4 cut(s) 198, 234, 276, 446
HpyF3I CTNAG 1 cut(s) 718
HpySE526I ACGT 1 cut(s) 694
Hsp92II CATG 2 cut(s) 138, 717
Ksp22I TGATCA 1 cut(s) 538
Kzo9I GATC 5 cut(s) 292, 538, 673, 754, 765
LmnI GCTCC 3 cut(s) 353, 391, 597
Lsp1109I GCAGC 2 cut(s) 224, 737
LweI GCATC 1 cut(s) 56
MaeI CTAG 2 cut(s) 296, 561
MaeII ACGT 1 cut(s) 694
MaeIII GTNAC 3 cut(s) 96, 306, 343
MalI GATC 5 cut(s) 294, 540, 675, 756, 767
MboI GATC 5 cut(s) 292, 538, 673, 754, 765
MboII GAAGA 5 cut(s) 47, 497, 749, 764, 790
MflI RGATCY 2 cut(s) 673, 754
MhlI GDGCHC 1 cut(s) 557
MluCI AATT 6 cut(s) 61, 395, 453, 489, 630, 832
MnlI CCTC 4 cut(s) 24, 203, 768, 811
MroXI GAANNNNTTC 1 cut(s) 756
MseI TTAA 2 cut(s) 24, 831
MspI CCGG 1 cut(s) 677
MwoI GCNNNNNNNGC 4 cut(s) 198, 234, 276, 446
NdeII GATC 5 cut(s) 292, 538, 673, 754, 765
NlaIII CATG 2 cut(s) 138, 717
NmuCI GTSAC 1 cut(s) 96
NspI RCATGY 1 cut(s) 717
PdmI GAANNNNTTC 1 cut(s) 756
PfeI GAWTC 2 cut(s) 77, 502
PkrI GCNGC 2 cut(s) 239, 727
PshBI ATTAAT 1 cut(s) 831
PspPI GGNCC 1 cut(s) 219
PsuI RGATCY 2 cut(s) 673, 754
RsaI GTAC 2 cut(s) 531, 745
RsaNI GTAC 2 cut(s) 530, 744
SaqAI TTAA 2 cut(s) 24, 831
SatI GCNGC 2 cut(s) 238, 726
Sau3AI GATC 5 cut(s) 292, 538, 673, 754, 765
Sau96I GGNCC 1 cut(s) 219
ScaI AGTACT 1 cut(s) 531
SduI GDGCHC 1 cut(s) 557
SetI ASST 8 cut(s) 174, 239, 264, 403, 451, 473, 619, 697
SfaNI GCATC 1 cut(s) 56
SinI GGWCC 1 cut(s) 219
Sse9I AATT 6 cut(s) 61, 395, 453, 489, 630, 832
SspI AATATT 1 cut(s) 829
SspMI CTAG 2 cut(s) 296, 561
TaaI ACNGT 5 cut(s) 96, 223, 289, 343, 590
TaiI ACGT 1 cut(s) 697
TaqI TCGA 1 cut(s) 481
TasI AATT 6 cut(s) 61, 395, 453, 489, 630, 832
TatI WGTACW 1 cut(s) 529
TfiI GAWTC 2 cut(s) 77, 502
Tru1I TTAA 2 cut(s) 24, 831
Tru9I TTAA 2 cut(s) 24, 831
TscAI CASTG 2 cut(s) 447, 652
TseFI GTSAC 1 cut(s) 96
TseI GCWGC 2 cut(s) 237, 725
Tsp45I GTSAC 1 cut(s) 96
TspDTI ATGAA 1 cut(s) 765
TspGWI ACGGA 1 cut(s) 668
TspRI CASTG 2 cut(s) 447, 652
VpaK11BI GGWCC 1 cut(s) 219
VspI ATTAAT 1 cut(s) 831
XagI CCTNNNNNAGG 1 cut(s) 685
XapI RAATTY 2 cut(s) 61, 489
XceI RCATGY 1 cut(s) 717
XmnI GAANNNNTTC 1 cut(s) 756
XspI CTAG 2 cut(s) 296, 561
ZrmI AGTACT 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.