RchiOBHm_Chr1g0370211

Phosphoinositide phospholipase C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0012680
Physical Location & Seq
Forward (+)
59725429 .. 59726415
987 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 468 bp
ATGCATAAGGGCCCAAATAATGAGGTTTTTGATCCTAGAAGGCACTTGATGGTGACAAAGACATTGAAGGTGAAAGTATACGTTGGGAACGGATGGCACTTGGATTTTAGTCAAACACACTTCGATTCGTTCTCCCCACCAGACTTCTACACAAAAGTTTATATTGTTGGCGTGCCTTCAGATTGTGCCAAGTACAAAACAGAAATAAAAAACGACGAATGGATACCTGTTTGGGATGAAGAGTTTACTTTCGGTATGACCGTTCCAGAGCTCGCTATACTTCGGATTGAAGTTCGAGAGTATGACAGGTCTGATAAAGATGACTTTGGTGGCCAGACGTGTTTGCCGGTCTCGGAGCTAAGAACCGGGTTCCGGTCAGTCGCACTTTACGATCATAAGGGTGAGAAATACACATCTGTAAGGCTCCTAATGCGGTTTCAATTTGAGTCAAATCTCGCACCTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00562 ko01100 ko04020 ko04070 ko04919 ko04933 map00562 map01100 map04020 map04070 map04919 map04933
Pfam Domains
Protein Families
C2 EF-hand_like PI-PLC-X PI-PLC-Y

Protein Analysis

155

Amino Acids

18.06

Weight (kDa)

5.95

Isoelectric Point (pI)

53.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 21 - 123 3e-16 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 78
AciI CCGC 1 cut(s) 433
AclWI GGATC 1 cut(s) 26
AcoI YGGCCR 1 cut(s) 331
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 372
AflIII ACRYGT 1 cut(s) 338
AgsI TTSAA 3 cut(s) 67, 290, 440
AjiI CACGTC 1 cut(s) 339
AluBI AGCT 2 cut(s) 271, 358
AluI AGCT 2 cut(s) 271, 358
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 1 cut(s) 355
AlwI GGATC 1 cut(s) 26
AoxI GGCC 2 cut(s) 10, 331
ApaI GGGCCC 1 cut(s) 14
AspS9I GGNCC 2 cut(s) 10, 11
AsuC2I CCSGG 1 cut(s) 367
AsuHPI GGTGA 3 cut(s) 64, 82, 413
BaeGI GKGCMC 1 cut(s) 14
BalI TGGCCA 1 cut(s) 333
BanII GRGCYC 2 cut(s) 14, 273
Bbv12I GWGCWC 1 cut(s) 273
BccI CCATC 2 cut(s) 43, 87
BciVI GTATCC 1 cut(s) 216
BcnI CCSGG 1 cut(s) 367
BcoDI GTCTC 1 cut(s) 355
BfaI CTAG 2 cut(s) 36, 466
BfuI GTATCC 1 cut(s) 216
Bme1390I CCNGG 1 cut(s) 367
BmgBI CACGTC 1 cut(s) 339
BmgT120I GGNCC 2 cut(s) 10, 11
BmiI GGNNCC 3 cut(s) 12, 371, 425
BmrFI CCNGG 1 cut(s) 367
BpuMI CCSGG 1 cut(s) 367
BsaI GGTCTC 1 cut(s) 355
BsaWI WCCGGW 1 cut(s) 372
Bsc4I CCNNNNNNNGG 1 cut(s) 372
Bse118I RCCGGY 1 cut(s) 346
BseGI GGATG 2 cut(s) 98, 241
BseLI CCNNNNNNNGG 1 cut(s) 372
BseSI GKGCMC 1 cut(s) 14
BshFI GGCC 2 cut(s) 12, 333
BsiHKAI GWGCWC 1 cut(s) 273
BsiSI CCGG 3 cut(s) 347, 366, 373
BslI CCNNNNNNNGG 1 cut(s) 372
BsmAI GTCTC 1 cut(s) 355
BsnI GGCC 2 cut(s) 12, 333
Bso31I GGTCTC 1 cut(s) 355
Bsp120I GGGCCC 1 cut(s) 10
Bsp1286I GDGCHC 2 cut(s) 14, 273
Bsp143I GATC 2 cut(s) 31, 391
BspACI CCGC 1 cut(s) 433
BspANI GGCC 2 cut(s) 12, 333
BspLI GGNNCC 3 cut(s) 12, 371, 425
BspPI GGATC 1 cut(s) 26
BspTNI GGTCTC 1 cut(s) 355
BsrFI RCCGGY 1 cut(s) 346
BssAI RCCGGY 1 cut(s) 346
BssMI GATC 2 cut(s) 31, 391
BssNAI GTATAC 1 cut(s) 79
Bst1107I GTATAC 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 262
Bst6I CTCTTC 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 173, 273
BstDEI CTNAG 1 cut(s) 359
BstF5I GGATG 2 cut(s) 98, 241
BstKTI GATC 2 cut(s) 34, 394
BstMAI GTCTC 1 cut(s) 355
BstMBI GATC 2 cut(s) 31, 391
BstMWI GCNNNNNNNGC 1 cut(s) 430
BstSCI CCNGG 1 cut(s) 365
BstSLI GKGCMC 1 cut(s) 14
BstZ17I GTATAC 1 cut(s) 79
BsuI GTATCC 1 cut(s) 216
BsuRI GGCC 2 cut(s) 12, 333
BtrI CACGTC 1 cut(s) 339
BtsCI GGATG 2 cut(s) 98, 241
Cac8I GCNNGC 2 cut(s) 173, 273
Cfr10I RCCGGY 1 cut(s) 346
Cfr13I GGNCC 2 cut(s) 10, 11
Csp6I GTAC 1 cut(s) 193
CviJI RGCY 5 cut(s) 12, 271, 333, 358, 424
CviKI_1 RGCY 5 cut(s) 12, 271, 333, 358, 424
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 1 cut(s) 359
DpnI GATC 2 cut(s) 33, 393
DpnII GATC 2 cut(s) 31, 391
EaeI YGGCCR 1 cut(s) 331
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Ecl136II GAGCTC 1 cut(s) 271
Eco24I GRGCYC 2 cut(s) 14, 273
Eco31I GGTCTC 1 cut(s) 355
Eco53kI GAGCTC 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 162
EcoICRI GAGCTC 1 cut(s) 271
EcoO109I RGGNCCY 1 cut(s) 10
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 14, 273
FaiI YATR 7 cut(s) 6, 79, 162, 257, 278, 303, 396
FblI GTMKAC 1 cut(s) 78
FokI GGATG 2 cut(s) 105, 248
FriOI GRGCYC 2 cut(s) 14, 273
FspBI CTAG 2 cut(s) 36, 466
HaeIII GGCC 2 cut(s) 12, 333
HapII CCGG 3 cut(s) 347, 366, 373
HinfI GANTC 2 cut(s) 125, 446
HpaII CCGG 3 cut(s) 347, 366, 373
HphI GGTGA 3 cut(s) 64, 82, 413
Hpy166II GTNNAC 2 cut(s) 79, 246
Hpy188I TCNGA 4 cut(s) 181, 285, 313, 355
Hpy188III TCNNGA 2 cut(s) 266, 296
Hpy8I GTNNAC 2 cut(s) 79, 246
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 3 cut(s) 33, 61, 186
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4IV ACGT 2 cut(s) 81, 338
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 430
HpyF3I CTNAG 1 cut(s) 359
HpySE526I ACGT 2 cut(s) 81, 338
Kzo9I GATC 2 cut(s) 31, 391
LmnI GCTCC 2 cut(s) 355, 429
LpnPI CCDG 8 cut(s) 153, 240, 279, 292, 347, 360, 379, 386
MaeI CTAG 2 cut(s) 36, 466
MaeII ACGT 2 cut(s) 81, 338
MaeIII GTNAC 1 cut(s) 52
MalI GATC 2 cut(s) 33, 393
MboI GATC 2 cut(s) 31, 391
MboII GAAGA 1 cut(s) 251
MhlI GDGCHC 2 cut(s) 14, 273
MlsI TGGCCA 1 cut(s) 333
MluCI AATT 1 cut(s) 440
MluNI TGGCCA 1 cut(s) 333
MlyI GAGTC 1 cut(s) 455
MnlI CCTC 1 cut(s) 16
Mox20I TGGCCA 1 cut(s) 333
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 333
MslI CAYNNNNRTG 1 cut(s) 399
Msp20I TGGCCA 1 cut(s) 333
MspI CCGG 3 cut(s) 347, 366, 373
MspR9I CCNGG 1 cut(s) 367
MwoI GCNNNNNNNGC 1 cut(s) 430
NciI CCSGG 1 cut(s) 367
NdeII GATC 2 cut(s) 31, 391
NlaIV GGNNCC 3 cut(s) 12, 371, 425
NmuCI GTSAC 1 cut(s) 52
NsiI ATGCAT 1 cut(s) 6
PcsI WCGNNNNNNNCGW 2 cut(s) 258, 387
PfeI GAWTC 1 cut(s) 125
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
Psp124BI GAGCTC 1 cut(s) 273
PspN4I GGNNCC 3 cut(s) 12, 371, 425
PspOMI GGGCCC 1 cut(s) 10
PspPI GGNCC 2 cut(s) 10, 11
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
RseI CAYNNNNRTG 1 cut(s) 399
SacI GAGCTC 1 cut(s) 273
Sau3AI GATC 2 cut(s) 31, 391
Sau96I GGNCC 2 cut(s) 10, 11
SchI GAGTC 1 cut(s) 455
ScrFI CCNGG 1 cut(s) 367
SduI GDGCHC 2 cut(s) 14, 273
SetI ASST 9 cut(s) 27, 72, 84, 229, 273, 311, 341, 360, 463
SmiMI CAYNNNNRTG 1 cut(s) 399
Sse9I AATT 1 cut(s) 440
SsiI CCGC 1 cut(s) 433
SspMI CTAG 2 cut(s) 36, 466
SstI GAGCTC 1 cut(s) 273
StyD4I CCNGG 1 cut(s) 365
TaaI ACNGT 1 cut(s) 262
TaiI ACGT 2 cut(s) 84, 341
TaqI TCGA 2 cut(s) 123, 295
TasI AATT 1 cut(s) 440
TatI WGTACW 1 cut(s) 192
TfiI GAWTC 1 cut(s) 125
TseFI GTSAC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 1 cut(s) 252
TspGWI ACGGA 1 cut(s) 105
XmiI GTMKAC 1 cut(s) 78
XspI CTAG 2 cut(s) 36, 466
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.