Rroxscaffold_1G00011360

Phosphoinositide phospholipase C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0012680
Physical Location & Seq
Reverse (-)
14336862 .. 14339124
2263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00011360.1

Sequence Viewer

Length: 369 bp
ATGGGAGATGGTTGGCATTTGGATTTCAAACAAACACACTTTGATTTATATTCACCACCAGATTTTTACACCAGGGTCGGCATAGCAGGAGTTCCGGCTGATGAGGTAATGAAGAAAACCAAGAAAAAAGAGGACGATTGGACTCCTGTATGGGAAGAAGAGTTTACATTTCCGTTGAGAGCCCCAGAGTTGGCTCTGCTTAGAATTGAGGTACATGAATATGACATGTCTGAGAAAGATGACTTTAGCGGCCAGACTTGTCTGCCAGTCTCTGAATTGAGACAAGGAATTCATGCAGTCCCTCTCTTTGACCGTAAAGGAGTGAAATACAACTCATTGAGGCTTCTAATGCGATTTGAGTTCACCTGA

Protein Analysis

122

Amino Acids

14.33

Weight (kDa)

5.17

Isoelectric Point (pI)

58.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 17 - 96 1.5e-14 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 249
AcoI YGGCCR 1 cut(s) 250
AcsI RAATTY 1 cut(s) 288
AfaI GTAC 1 cut(s) 213
AfiI CCNNNNNNNGG 1 cut(s) 190
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 1 cut(s) 28
AjnI CCWGG 1 cut(s) 71
Alw26I GTCTC 2 cut(s) 274, 274
AlwNI CAGNNNCTG 1 cut(s) 272
AoxI GGCC 1 cut(s) 250
ApoI RAATTY 1 cut(s) 288
AsuHPI GGTGA 2 cut(s) 45, 355
BanII GRGCYC 1 cut(s) 184
BccI CCATC 1 cut(s) 2
BciT130I CCWGG 1 cut(s) 73
BcoDI GTCTC 2 cut(s) 274, 274
BisI GCNGC 1 cut(s) 250
BlsI GCNGC 1 cut(s) 251
Bme1390I CCNGG 1 cut(s) 73
BmrFI CCNGG 1 cut(s) 73
BsaJI CCNNGG 1 cut(s) 72
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse1I ACTGG 1 cut(s) 266
BseBI CCWGG 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 72
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 266
BshFI GGCC 1 cut(s) 252
BsiSI CCGG 1 cut(s) 95
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 190
BsmAI GTCTC 2 cut(s) 274, 274
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 184
BspACI CCGC 1 cut(s) 249
BspANI GGCC 1 cut(s) 252
BspCNI CTCAG 1 cut(s) 223
BsrI ACTGG 1 cut(s) 266
BssECI CCNNGG 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 73
Bst4CI ACNGT 1 cut(s) 314
Bst6I CTCTTC 1 cut(s) 153
BstDEI CTNAG 2 cut(s) 200, 231
BstMAI GTCTC 2 cut(s) 274, 274
BstMWI GCNNNNNNNGC 1 cut(s) 349
BstNI CCWGG 1 cut(s) 73
BstNSI RCATGY 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 71
BsuRI GGCC 1 cut(s) 252
CaiI CAGNNNCTG 1 cut(s) 272
Csp6I GTAC 1 cut(s) 212
CviAII CATG 3 cut(s) 215, 226, 293
CviJI RGCY 5 cut(s) 98, 182, 194, 252, 343
CviKI_1 RGCY 5 cut(s) 98, 182, 194, 252, 343
CviQI GTAC 1 cut(s) 212
DdeI CTNAG 2 cut(s) 200, 231
EaeI YGGCCR 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 184
EcoRI GAATTC 1 cut(s) 288
EcoRII CCWGG 1 cut(s) 71
EcoT38I GRGCYC 1 cut(s) 184
FaeI CATG 3 cut(s) 218, 229, 296
FaiI YATR 7 cut(s) 49, 83, 151, 216, 222, 227, 294
FaqI GGGAC 1 cut(s) 284
FatI CATG 3 cut(s) 214, 225, 292
Fnu4HI GCNGC 1 cut(s) 250
FriOI GRGCYC 1 cut(s) 184
Fsp4HI GCNGC 1 cut(s) 250
GluI GCNGC 1 cut(s) 250
HaeIII GGCC 1 cut(s) 252
HapII CCGG 1 cut(s) 95
Hin1II CATG 3 cut(s) 218, 229, 296
HinfI GANTC 1 cut(s) 142
HpaII CCGG 1 cut(s) 95
HphI GGTGA 2 cut(s) 45, 355
Hpy166II GTNNAC 2 cut(s) 165, 363
Hpy188I TCNGA 2 cut(s) 232, 274
Hpy8I GTNNAC 2 cut(s) 165, 363
HpyCH4III ACNGT 1 cut(s) 314
HpyCH4V TGCA 1 cut(s) 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 349
HpyF3I CTNAG 2 cut(s) 200, 231
Hsp92II CATG 3 cut(s) 218, 229, 296
LpnPI CCDG 9 cut(s) 58, 72, 72, 85, 108, 159, 198, 266, 279
MboII GAAGA 3 cut(s) 124, 167, 170
MhlI GDGCHC 1 cut(s) 184
MluCI AATT 3 cut(s) 204, 275, 288
MlyI GAGTC 1 cut(s) 136
MnlI CCTC 5 cut(s) 97, 124, 202, 312, 333
MslI CAYNNNNRTG 1 cut(s) 219
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 73
MvaI CCWGG 1 cut(s) 73
MwoI GCNNNNNNNGC 1 cut(s) 349
NlaIII CATG 3 cut(s) 218, 229, 296
NspI RCATGY 1 cut(s) 229
PciI ACATGT 1 cut(s) 225
PkrI GCNGC 1 cut(s) 251
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
PscI ACATGT 1 cut(s) 225
Psp6I CCWGG 1 cut(s) 71
PspGI CCWGG 1 cut(s) 71
PstNI CAGNNNCTG 1 cut(s) 272
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
RseI CAYNNNNRTG 1 cut(s) 219
SatI GCNGC 1 cut(s) 250
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 73
SduI GDGCHC 1 cut(s) 184
SetI ASST 3 cut(s) 108, 213, 368
SmiMI CAYNNNNRTG 1 cut(s) 219
Sse9I AATT 3 cut(s) 204, 275, 288
SsiI CCGC 1 cut(s) 249
StyD4I CCNGG 1 cut(s) 71
TaaI ACNGT 1 cut(s) 314
TasI AATT 3 cut(s) 204, 275, 288
TauI GCSGC 1 cut(s) 252
TspDTI ATGAA 3 cut(s) 125, 231, 281
TspGWI ACGGA 1 cut(s) 162
XapI RAATTY 1 cut(s) 288
XceI RCATGY 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.