Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0012680

Physical Location & Seq

Genomic Coordinates Forward (+)

76678968 .. 76681155

Gene Structure 2188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG487900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGAAGGAATGTTCAGAGCTAATGGAGGTTGTGGTTATGTGAAAAAACCTAAATTTTTACTTACCGGCAGTCCAGATAATGAGGTTTTTAATCCTGAAAAATCGTACCGAGTCAGGCAAATCTTGAAGGTTAAAGTTTACATGGGTGAAGGATGGCATTCAGACTTCCACCGCACACACTTTGATCTCTTCTCTCCACCGGACTTTTTTGTGAGGGTTGGAATTGCTGGAGTCCCAACGGACACACTAATGGAGGAGACTAAGACAATCGAAGACGAGTGGATTCCAGTGTGGAATCAGGAGTTCAACTTCCCATTGAGTGTTCCAGAACTAGCTGTGCTTAGAATTGAAGTTAAAGAGTACGACAGTGCTGGAAATCATGACTTTGGTGGCCAAATATGTCTGCCAATATCAGAGCTTAGAACTGGGTTCAGAGCAGTTCCTCTGCACGATAAAAAAGGGGTAAGGTATAAATCTGTGAAGCTTCTTATGAAATTTGAGTTTGAAAGTCCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004629 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006970 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0008081 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009553 GO:0009555 GO:0009556 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010600 GO:0010601 GO:0010817 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019222 GO:0019953 GO:0022402 GO:0022414 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0034293 GO:0042221 GO:0042578 GO:0042742 GO:0043207 GO:0043934 GO:0044464 GO:0044703 GO:0046885 GO:0046886 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051321 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071944 GO:0090354 GO:0090355 GO:0090567 GO:0097305 GO:0097306 GO:0098542 GO:0099402 GO:1901700 GO:1901701 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04020 ko04070 ko04919 ko04933 map00562 map01100 map04020 map04070 map04919 map04933

Pfam Domains

Protein Families

C2 EF-hand_like PI-PLC-X PI-PLC-Y

Protein Analysis

172

Amino Acids

19.8

Weight (kDa)

5.99

Isoelectric Point (pI)

39.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	41 - 142	4.7e-14	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012680)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0370211 RchiOBHm_Chr4g0394401 RchiOBHm_Chr5g0010681 RchiOBHm_Chr6g0251411
rosa_multiflora	Rmu_co8189356.1_g000001 Rmu_co8429665.1_g000001 Rmu_sc0000738.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011360 Rroxscaffold_4G00287280 Rroxscaffold_5G00339410
rosa_rugosa	Rorug03G0366200.1
rosa_samantha	Rh2BG156200 Rh4CG056100 Rh4CG056300 Rh4CG058300 Rh5DG487700 Rh5DG487900 Rh6AG067800 Rh6BG025400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	172
AcoI	YGGCCR	1 cut(s)	391
AcsI	RAATTY	2 cut(s)	53, 494
AfaI	GTAC	2 cut(s)	107, 362
AgsI	TTSAA	4 cut(s)	127, 307, 350, 506
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	4 cut(s)	20, 335, 418, 484
AluI	AGCT	4 cut(s)	20, 335, 418, 484
Alw26I	GTCTC	1 cut(s)	251
AoxI	GGCC	1 cut(s)	391
ApoI	RAATTY	2 cut(s)	53, 494
AsuHPI	GGTGA	1 cut(s)	158
BalI	TGGCCA	1 cut(s)	393
BbsI	GAAGAC	1 cut(s)	279
BccI	CCATC	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	251
BfaI	CTAG	1 cut(s)	332
BmrI	ACTGGG	1 cut(s)	435
BmuI	ACTGGG	1 cut(s)	435
BpiI	GAAGAC	1 cut(s)	279
BpmI	CTGGAG	1 cut(s)	249
BsaWI	WCCGGW	1 cut(s)	199
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	2 cut(s)	287, 430
BseGI	GGATG	1 cut(s)	158
BseMII	CTCAG	1 cut(s)	504
BseNI	ACTGG	2 cut(s)	287, 430
BseRI	GAGGAG	1 cut(s)	269
BsgI	GTGCAG	1 cut(s)	431
BshFI	GGCC	1 cut(s)	393
BsiSI	CCGG	2 cut(s)	66, 200
BslFI	GGGAC	1 cut(s)	218
BsmAI	GTCTC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	218
BsmI	GAATGC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	393
Bsp143I	GATC	1 cut(s)	184
BspACI	CCGC	1 cut(s)	172
BspANI	GGCC	1 cut(s)	393
BspCNI	CTCAG	1 cut(s)	505
BspHI	TCATGA	1 cut(s)	379
BsrFI	RCCGGY	1 cut(s)	65
BsrI	ACTGG	2 cut(s)	287, 430
BssAI	RCCGGY	1 cut(s)	65
BssMI	GATC	1 cut(s)	184
Bst4CI	ACNGT	1 cut(s)	368
Bst6I	CTCTTC	1 cut(s)	194
BstDEI	CTNAG	4 cut(s)	261, 341, 419, 513
BstF5I	GGATG	1 cut(s)	158
BstKTI	GATC	1 cut(s)	187
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	1 cut(s)	184
BstV2I	GAAGAC	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	393
BtsCI	GGATG	1 cut(s)	158
BtsIMutI	CAGTG	2 cut(s)	294, 373
CciI	TCATGA	1 cut(s)	379
Cfr10I	RCCGGY	1 cut(s)	65
Csp6I	GTAC	2 cut(s)	106, 361
CviAII	CATG	2 cut(s)	142, 380
CviJI	RGCY	5 cut(s)	20, 335, 393, 418, 484
CviKI_1	RGCY	5 cut(s)	20, 335, 393, 418, 484
CviQI	GTAC	2 cut(s)	106, 361
DdeI	CTNAG	4 cut(s)	261, 341, 419, 513
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	391
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
FaeI	CATG	2 cut(s)	145, 383
FaiI	YATR	6 cut(s)	39, 143, 381, 400, 471, 491
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	2 cut(s)	141, 379
FokI	GGATG	1 cut(s)	165
FspBI	CTAG	1 cut(s)	332
GsuI	CTGGAG	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	393
HapII	CCGG	2 cut(s)	66, 200
Hin1II	CATG	2 cut(s)	145, 383
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	4 cut(s)	111, 231, 283, 295
HpaII	CCGG	2 cut(s)	66, 200
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	4 cut(s)	17, 163, 415, 434
Hpy188III	TCNNGA	7 cut(s)	74, 95, 124, 299, 326, 380, 512
Hpy8I	GTNNAC	1 cut(s)	139
HpyAV	CCTTC	2 cut(s)	121, 143
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4V	TGCA	1 cut(s)	448
HpyF3I	CTNAG	4 cut(s)	261, 341, 419, 513
Hsp92II	CATG	2 cut(s)	145, 383
Kzo9I	GATC	1 cut(s)	184
MaeI	CTAG	1 cut(s)	332
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	2 cut(s)	181, 284
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	4 cut(s)	53, 222, 345, 494
MluNI	TGGCCA	1 cut(s)	393
MlyI	GAGTC	2 cut(s)	120, 240
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	5 cut(s)	20, 76, 207, 247, 453
Mox20I	TGGCCA	1 cut(s)	393
MscI	TGGCCA	1 cut(s)	393
MseI	TTAA	3 cut(s)	90, 132, 354
MslI	CAYNNNNRTG	1 cut(s)	248
Msp20I	TGGCCA	1 cut(s)	393
MspI	CCGG	2 cut(s)	66, 200
Mva1269I	GAATGC	1 cut(s)	157
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	2 cut(s)	145, 383
PagI	TCATGA	1 cut(s)	379
PctI	GAATGC	1 cut(s)	157
PfeI	GAWTC	2 cut(s)	283, 295
PleI	GAGTC	2 cut(s)	119, 239
PpsI	GAGTC	2 cut(s)	119, 239
RsaI	GTAC	2 cut(s)	107, 362
RsaNI	GTAC	2 cut(s)	106, 361
RseI	CAYNNNNRTG	1 cut(s)	248
SaqAI	TTAA	3 cut(s)	90, 132, 354
Sau3AI	GATC	1 cut(s)	184
SchI	GAGTC	2 cut(s)	120, 240
SetI	ASST	9 cut(s)	22, 31, 52, 87, 132, 337, 420, 470, 486
SmiMI	CAYNNNNRTG	1 cut(s)	248
Sse9I	AATT	4 cut(s)	53, 222, 345, 494
SsiI	CCGC	1 cut(s)	172
SspMI	CTAG	1 cut(s)	332
TaaI	ACNGT	1 cut(s)	368
TaqI	TCGA	1 cut(s)	270
TasI	AATT	4 cut(s)	53, 222, 345, 494
TfiI	GAWTC	2 cut(s)	283, 295
Tru1I	TTAA	3 cut(s)	90, 132, 354
Tru9I	TTAA	3 cut(s)	90, 132, 354
TscAI	CASTG	2 cut(s)	294, 373
TspDTI	ATGAA	1 cut(s)	506
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	2 cut(s)	294, 373
XapI	RAATTY	2 cut(s)	53, 494
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.