Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000738.1

Orthogroup ID

OG0012680

Physical Location & Seq

Genomic Coordinates Reverse (-)

11348 .. 13751

Gene Structure 2404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000738.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atgaattattttcctttccgcaaaccaaacgagaccttaaggtactacttattaacacttgaaaataagcaggacaatgacgaagatgatcgggatgaagatgaggagaatgctgatctacaatataagcagttaattgcaatccatgctggaaaaccgaaaggggggttggatatgttgcatattgatcccaagaaagtcagacgtcttagcttgagcgagcaacaactcgaacgtgcatcaaaaactcgtggaacagatattgttaggaagtgcatgtctagctccatattctctcttctggataaacaggttaaagtttacatgggtgaaggatggcattcagacttccaccgcacgcactttgatctcttctctccaccggacttttttgtgagggttggaattgctggagtaccaatggacacactaatggaggagactaagacaatcgaagacgagtggattccagtgtggaatcaggagttcaacttcccattgagtgttccagaactagctgtgcttagaattgaagttaaagagtacgacagttctggaaatcatgactttggtggccaaatatgtctgccaatatcagagcttagaactgggttcagagcagttcctctgcatgataaaaaaggggtaaggtataaatctgtgaagcttcttatgaaatttgagtttgaaagtcctgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004629 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006970 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0008081 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009553 GO:0009555 GO:0009556 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010600 GO:0010601 GO:0010817 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019222 GO:0019953 GO:0022402 GO:0022414 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0034293 GO:0042221 GO:0042578 GO:0042742 GO:0043207 GO:0043934 GO:0044464 GO:0044703 GO:0046885 GO:0046886 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051321 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071944 GO:0090354 GO:0090355 GO:0090567 GO:0097305 GO:0097306 GO:0098542 GO:0099402 GO:1901700 GO:1901701 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04020 ko04070 ko04919 ko04933 map00562 map01100 map04020 map04070 map04919 map04933

Pfam Domains

Protein Families

C2 EF-hand_like PI-PLC-X PI-PLC-Y

Protein Analysis

233

Amino Acids

27.15

Weight (kDa)

5.47

Isoelectric Point (pI)

51.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012680)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0370211 RchiOBHm_Chr4g0394401 RchiOBHm_Chr5g0010681 RchiOBHm_Chr6g0251411
rosa_multiflora	Rmu_co8189356.1_g000001 Rmu_co8429665.1_g000001 Rmu_sc0000738.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011360 Rroxscaffold_4G00287280 Rroxscaffold_5G00339410
rosa_rugosa	Rorug03G0366200.1
rosa_samantha	Rh2BG156200 Rh4CG056100 Rh4CG056300 Rh4CG058300 Rh5DG487700 Rh5DG487900 Rh6AG067800 Rh6BG025400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	208
AciI	CCGC	2 cut(s)	19, 355
AclWI	GGATC	1 cut(s)	182
AcoI	YGGCCR	1 cut(s)	574
AcsI	RAATTY	1 cut(s)	677
AcyI	GRCGYC	1 cut(s)	205
AfaI	GTAC	3 cut(s)	44, 417, 545
AfiI	CCNNNNNNNGG	1 cut(s)	164
AflII	CTTAAG	1 cut(s)	37
AgsI	TTSAA	4 cut(s)	62, 490, 533, 689
AjuI	GAANNNNNNNTTGG	2 cut(s)	152, 184
AluBI	AGCT	5 cut(s)	213, 285, 518, 601, 667
AluI	AGCT	5 cut(s)	213, 285, 518, 601, 667
Alw26I	GTCTC	2 cut(s)	26, 434
AlwI	GGATC	1 cut(s)	182
AoxI	GGCC	1 cut(s)	574
ApoI	RAATTY	1 cut(s)	677
AsuHPI	GGTGA	1 cut(s)	341
BalI	TGGCCA	1 cut(s)	576
BauI	CACGAG	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	462
BccI	CCATC	1 cut(s)	330
BcoDI	GTCTC	2 cut(s)	26, 434
BfaI	CTAG	2 cut(s)	282, 515
BfrI	CTTAAG	1 cut(s)	37
BmrI	ACTGGG	1 cut(s)	618
BmsI	GCATC	1 cut(s)	248
BmuI	ACTGGG	1 cut(s)	618
BpiI	GAAGAC	1 cut(s)	462
BpmI	CTGGAG	1 cut(s)	432
BpuEI	CTTGAG	1 cut(s)	235
BsaHI	GRCGYC	1 cut(s)	205
BsaI	GGTCTC	1 cut(s)	26
BsaWI	WCCGGW	1 cut(s)	382
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	2 cut(s)	470, 613
BseGI	GGATG	2 cut(s)	100, 341
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMII	CTCAG	1 cut(s)	687
BseNI	ACTGG	2 cut(s)	470, 613
BseRI	GAGGAG	2 cut(s)	119, 452
BshFI	GGCC	1 cut(s)	576
BsiSI	CCGG	1 cut(s)	383
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	2 cut(s)	26, 434
BsmI	GAATGC	2 cut(s)	115, 340
BsnI	GGCC	1 cut(s)	576
Bso31I	GGTCTC	1 cut(s)	26
Bsp143I	GATC	4 cut(s)	88, 115, 187, 367
BspACI	CCGC	2 cut(s)	19, 355
BspANI	GGCC	1 cut(s)	576
BspCNI	CTCAG	1 cut(s)	688
BspHI	TCATGA	1 cut(s)	562
BspPI	GGATC	1 cut(s)	182
BspTI	CTTAAG	1 cut(s)	37
BspTNI	GGTCTC	1 cut(s)	26
BsrI	ACTGG	2 cut(s)	470, 613
BssMI	GATC	4 cut(s)	88, 115, 187, 367
BssNI	GRCGYC	1 cut(s)	205
BssSI	CACGAG	1 cut(s)	249
Bst2BI	CACGAG	1 cut(s)	249
Bst4CI	ACNGT	1 cut(s)	551
Bst6I	CTCTTC	2 cut(s)	303, 377
BstACI	GRCGYC	1 cut(s)	205
BstAFI	CTTAAG	1 cut(s)	37
BstAPI	GCANNNNNTGC	1 cut(s)	146
BstC8I	GCNNGC	2 cut(s)	221, 359
BstDEI	CTNAG	5 cut(s)	209, 444, 524, 602, 696
BstF5I	GGATG	2 cut(s)	100, 341
BstKTI	GATC	4 cut(s)	91, 118, 190, 370
BstMAI	GTCTC	2 cut(s)	26, 434
BstMBI	GATC	4 cut(s)	88, 115, 187, 367
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 282
BstNSI	RCATGY	1 cut(s)	280
BstV2I	GAAGAC	1 cut(s)	462
BsuRI	GGCC	1 cut(s)	576
BtsCI	GGATG	2 cut(s)	100, 341
BtsIMutI	CAGTG	1 cut(s)	477
Cac8I	GCNNGC	2 cut(s)	221, 359
CciI	TCATGA	1 cut(s)	562
Csp6I	GTAC	3 cut(s)	43, 416, 544
CviAII	CATG	5 cut(s)	146, 277, 325, 563, 632
CviJI	RGCY	6 cut(s)	213, 285, 518, 576, 601, 667
CviKI_1	RGCY	6 cut(s)	213, 285, 518, 576, 601, 667
CviQI	GTAC	3 cut(s)	43, 416, 544
DdeI	CTNAG	5 cut(s)	209, 444, 524, 602, 696
DpnI	GATC	4 cut(s)	90, 117, 189, 369
DpnII	GATC	4 cut(s)	88, 115, 187, 367
EaeI	YGGCCR	1 cut(s)	574
Eam1104I	CTCTTC	2 cut(s)	303, 377
EarI	CTCTTC	2 cut(s)	303, 377
Eco31I	GGTCTC	1 cut(s)	26
FaeI	CATG	5 cut(s)	149, 280, 328, 566, 635
FatI	CATG	5 cut(s)	145, 276, 324, 562, 631
FokI	GGATG	2 cut(s)	107, 348
FspBI	CTAG	2 cut(s)	282, 515
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	1 cut(s)	576
HapII	CCGG	1 cut(s)	383
Hin1I	GRCGYC	1 cut(s)	205
Hin1II	CATG	5 cut(s)	149, 280, 328, 566, 635
HindIII	AAGCTT	1 cut(s)	665
HinfI	GANTC	2 cut(s)	466, 478
HpaII	CCGG	1 cut(s)	383
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	4 cut(s)	203, 346, 598, 617
Hpy188III	TCNNGA	7 cut(s)	92, 302, 482, 509, 555, 563, 695
Hpy8I	GTNNAC	1 cut(s)	322
HpyAV	CCTTC	1 cut(s)	326
HpyCH4III	ACNGT	1 cut(s)	551
HpyCH4IV	ACGT	2 cut(s)	205, 235
HpyCH4V	TGCA	5 cut(s)	140, 181, 239, 276, 631
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 282
HpyF3I	CTNAG	5 cut(s)	209, 444, 524, 602, 696
HpySE526I	ACGT	2 cut(s)	205, 235
Hsp92I	GRCGYC	1 cut(s)	205
Hsp92II	CATG	5 cut(s)	149, 280, 328, 566, 635
Kzo9I	GATC	4 cut(s)	88, 115, 187, 367
LmnI	GCTCC	1 cut(s)	290
LweI	GCATC	1 cut(s)	248
MaeI	CTAG	2 cut(s)	282, 515
MaeII	ACGT	2 cut(s)	205, 235
MalI	GATC	4 cut(s)	90, 117, 189, 369
MboI	GATC	4 cut(s)	88, 115, 187, 367
MboII	GAAGA	5 cut(s)	95, 110, 290, 364, 467
MlsI	TGGCCA	1 cut(s)	576
MluCI	AATT	5 cut(s)	4, 135, 405, 528, 677
MluNI	TGGCCA	1 cut(s)	576
MmeI	TCCRAC	2 cut(s)	150, 382
MnlI	CCTC	4 cut(s)	97, 390, 430, 636
Mox20I	TGGCCA	1 cut(s)	576
MscI	TGGCCA	1 cut(s)	576
MseI	TTAA	5 cut(s)	38, 53, 134, 315, 537
MslI	CAYNNNNRTG	1 cut(s)	431
Msp20I	TGGCCA	1 cut(s)	576
MspCI	CTTAAG	1 cut(s)	37
MspI	CCGG	1 cut(s)	383
Mva1269I	GAATGC	2 cut(s)	115, 340
MwoI	GCNNNNNNNGC	2 cut(s)	146, 282
NdeII	GATC	4 cut(s)	88, 115, 187, 367
NlaIII	CATG	5 cut(s)	149, 280, 328, 566, 635
NspI	RCATGY	1 cut(s)	280
PagI	TCATGA	1 cut(s)	562
PctI	GAATGC	2 cut(s)	115, 340
PfeI	GAWTC	2 cut(s)	466, 478
RsaI	GTAC	3 cut(s)	44, 417, 545
RsaNI	GTAC	3 cut(s)	43, 416, 544
RseI	CAYNNNNRTG	1 cut(s)	431
SaqAI	TTAA	5 cut(s)	38, 53, 134, 315, 537
Sau3AI	GATC	4 cut(s)	88, 115, 187, 367
SfaNI	GCATC	1 cut(s)	248
SmiMI	CAYNNNNRTG	1 cut(s)	431
SmlI	CTYRAG	2 cut(s)	37, 214
SmoI	CTYRAG	2 cut(s)	37, 214
Sse9I	AATT	5 cut(s)	4, 135, 405, 528, 677
SsiI	CCGC	2 cut(s)	19, 355
SspMI	CTAG	2 cut(s)	282, 515
TaaI	ACNGT	1 cut(s)	551
TaiI	ACGT	2 cut(s)	208, 238
TaqI	TCGA	2 cut(s)	231, 453
TasI	AATT	5 cut(s)	4, 135, 405, 528, 677
TfiI	GAWTC	2 cut(s)	466, 478
Tru1I	TTAA	5 cut(s)	38, 53, 134, 315, 537
Tru9I	TTAA	5 cut(s)	38, 53, 134, 315, 537
TscAI	CASTG	1 cut(s)	477
TspDTI	ATGAA	3 cut(s)	17, 111, 689
TspRI	CASTG	1 cut(s)	477
Vha464I	CTTAAG	1 cut(s)	37
XapI	RAATTY	1 cut(s)	677
XceI	RCATGY	1 cut(s)	280
XspI	CTAG	2 cut(s)	282, 515
ZraI	GACGTC	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.