Rh5DG487700

Phosphoinositide phospholipase C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0012680
Physical Location & Seq
Forward (+)
76673294 .. 76674607
1314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG487700.1

Sequence Viewer

Length: 519 bp
ATGGAAGGAATGTTCAGAGCTAATGGAGGTTGTGGTTATGTGAAAAAACCTGATTTTTTACTTACCAGCGGTCCAGATAATGAGGTTTTCAATCCTGAAAAATCGTACCGAGTTAGGCAAATCTTGAAGGTAAAAGTTTACATGGGCGAAGGATGGCATTCAGATTTCCACCGCACACACTTTGATCTTTATTCTCCACCGGACTTTTTCGTGAGGGTTGGAATTGCTGGAGTCCCAAAGGACACAATAATGTTGGAGACCAAGCCGGTCGAGGACGACTGGATTCCAGTGTGGAATGAGGAGTTCAGCTTCCCATTGAGTGTTCCAGAAGTAGCTGTGCTTAGAGTTGAAGTTAAAGAGTATGACAATTCCGGAAATCATGACTTTGGTGGCCAAACATGTCTGCCAATATCAGAGCTCAGAACTGGGTTCAGAGCAGTTCCTCTGCATAGTAAAAGAGGGGTAAGGTATAAATCTGTGAAGCTGCTTATGAAATTTGAGTTTGAAAGTCCTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004629 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006970 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0008081 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009553 GO:0009555 GO:0009556 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010600 GO:0010601 GO:0010817 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019222 GO:0019953 GO:0022402 GO:0022414 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0034293 GO:0042221 GO:0042578 GO:0042742 GO:0043207 GO:0043934 GO:0044464 GO:0044703 GO:0046885 GO:0046886 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051321 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071944 GO:0090354 GO:0090355 GO:0090567 GO:0097305 GO:0097306 GO:0098542 GO:0099402 GO:1901700 GO:1901701 GO:1903046
KEGG Pathways
Metabolic & Signaling
ko00562 ko01100 ko04020 ko04070 ko04919 ko04933 map00562 map01100 map04020 map04070 map04919 map04933
Pfam Domains
Protein Families
C2 EF-hand_like PI-PLC-X PI-PLC-Y

Protein Analysis

172

Amino Acids

19.76

Weight (kDa)

5.98

Isoelectric Point (pI)

34.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 41 - 142 7e-14 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 371
AciI CCGC 2 cut(s) 69, 172
AcoI YGGCCR 1 cut(s) 391
AcsI RAATTY 1 cut(s) 494
AfaI GTAC 1 cut(s) 107
AflIII ACRYGT 1 cut(s) 398
AgsI TTSAA 4 cut(s) 91, 127, 350, 506
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 5 cut(s) 20, 309, 335, 418, 484
AluI AGCT 5 cut(s) 20, 309, 335, 418, 484
Alw21I GWGCWC 1 cut(s) 420
Alw26I GTCTC 1 cut(s) 251
Aor13HI TCCGGA 1 cut(s) 371
AoxI GGCC 1 cut(s) 391
ApeKI GCWGC 1 cut(s) 484
ApoI RAATTY 1 cut(s) 494
AspS9I GGNCC 1 cut(s) 71
AvaII GGWCC 1 cut(s) 71
BalI TGGCCA 1 cut(s) 393
BanII GRGCYC 1 cut(s) 420
Bbv12I GWGCWC 1 cut(s) 420
BbvI GCAGC 1 cut(s) 471
BccI CCATC 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 251
BisI GCNGC 1 cut(s) 485
BlsI GCNGC 1 cut(s) 486
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 71
BmrI ACTGGG 1 cut(s) 435
BmuI ACTGGG 1 cut(s) 435
BpmI CTGGAG 1 cut(s) 249
BsaI GGTCTC 1 cut(s) 251
BsaWI WCCGGW 2 cut(s) 199, 371
Bse118I RCCGGY 1 cut(s) 265
Bse1I ACTGG 3 cut(s) 284, 287, 430
BseAI TCCGGA 1 cut(s) 371
BseGI GGATG 1 cut(s) 158
BseMII CTCAG 2 cut(s) 433, 504
BseNI ACTGG 3 cut(s) 284, 287, 430
BseRI GAGGAG 1 cut(s) 314
BseXI GCAGC 1 cut(s) 471
Bsh1285I CGRYCG 1 cut(s) 270
BshFI GGCC 1 cut(s) 393
BsiEI CGRYCG 1 cut(s) 270
BsiHKAI GWGCWC 1 cut(s) 420
BsiSI CCGG 3 cut(s) 200, 266, 372
BslFI GGGAC 1 cut(s) 218
BsmAI GTCTC 1 cut(s) 251
BsmFI GGGAC 1 cut(s) 218
BsmI GAATGC 1 cut(s) 157
BsnI GGCC 1 cut(s) 393
Bso31I GGTCTC 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 420
Bsp13I TCCGGA 1 cut(s) 371
Bsp143I GATC 1 cut(s) 184
BspACI CCGC 2 cut(s) 69, 172
BspANI GGCC 1 cut(s) 393
BspCNI CTCAG 2 cut(s) 432, 505
BspEI TCCGGA 1 cut(s) 371
BspHI TCATGA 1 cut(s) 379
BspTNI GGTCTC 1 cut(s) 251
BsrFI RCCGGY 1 cut(s) 265
BsrI ACTGG 3 cut(s) 284, 287, 430
BssAI RCCGGY 1 cut(s) 265
BssMI GATC 1 cut(s) 184
BstDEI CTNAG 3 cut(s) 341, 419, 513
BstF5I GGATG 1 cut(s) 158
BstKTI GATC 1 cut(s) 187
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 1 cut(s) 184
BstMCI CGRYCG 1 cut(s) 270
BstNSI RCATGY 1 cut(s) 402
BstV1I GCAGC 1 cut(s) 471
BsuRI GGCC 1 cut(s) 393
BtsCI GGATG 1 cut(s) 158
BtsIMutI CAGTG 1 cut(s) 294
CciI TCATGA 1 cut(s) 379
Cfr10I RCCGGY 1 cut(s) 265
Cfr13I GGNCC 1 cut(s) 71
Csp6I GTAC 1 cut(s) 106
CviAII CATG 3 cut(s) 142, 380, 399
CviJI RGCY 7 cut(s) 20, 265, 309, 335, 393, 418, 484
CviKI_1 RGCY 7 cut(s) 20, 265, 309, 335, 393, 418, 484
CviQI GTAC 1 cut(s) 106
DdeI CTNAG 3 cut(s) 341, 419, 513
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
EaeI YGGCCR 1 cut(s) 391
Ecl136II GAGCTC 1 cut(s) 418
Eco24I GRGCYC 1 cut(s) 420
Eco31I GGTCTC 1 cut(s) 251
Eco47I GGWCC 1 cut(s) 71
Eco53kI GAGCTC 1 cut(s) 418
EcoICRI GAGCTC 1 cut(s) 418
EcoT38I GRGCYC 1 cut(s) 420
FaeI CATG 3 cut(s) 145, 383, 402
FaiI YATR 8 cut(s) 39, 143, 363, 381, 400, 450, 471, 491
FaqI GGGAC 1 cut(s) 218
FatI CATG 3 cut(s) 141, 379, 398
Fnu4HI GCNGC 1 cut(s) 485
FokI GGATG 1 cut(s) 165
FriOI GRGCYC 1 cut(s) 420
Fsp4HI GCNGC 1 cut(s) 485
GluI GCNGC 1 cut(s) 485
GsuI CTGGAG 1 cut(s) 249
HaeIII GGCC 1 cut(s) 393
HapII CCGG 3 cut(s) 200, 266, 372
Hin1II CATG 3 cut(s) 145, 383, 402
HinfI GANTC 2 cut(s) 231, 283
HpaII CCGG 3 cut(s) 200, 266, 372
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 5 cut(s) 17, 163, 415, 422, 434
Hpy188III TCNNGA 8 cut(s) 74, 95, 124, 211, 326, 372, 380, 512
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 2 cut(s) 121, 143
HpyCH4V TGCA 1 cut(s) 448
HpyF3I CTNAG 3 cut(s) 341, 419, 513
Hsp92II CATG 3 cut(s) 145, 383, 402
Kpn2I TCCGGA 1 cut(s) 371
Kzo9I GATC 1 cut(s) 184
Lsp1109I GCAGC 1 cut(s) 471
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 420
MlsI TGGCCA 1 cut(s) 393
MluCI AATT 3 cut(s) 222, 367, 494
MluNI TGGCCA 1 cut(s) 393
MlyI GAGTC 1 cut(s) 240
MmeI TCCRAC 2 cut(s) 199, 234
MnlI CCTC 7 cut(s) 20, 76, 207, 265, 292, 452, 453
Mox20I TGGCCA 1 cut(s) 393
MroI TCCGGA 1 cut(s) 371
MscI TGGCCA 1 cut(s) 393
MseI TTAA 1 cut(s) 354
MslI CAYNNNNRTG 1 cut(s) 248
Msp20I TGGCCA 1 cut(s) 393
MspA1I CMGCKG 1 cut(s) 69
MspI CCGG 3 cut(s) 200, 266, 372
Mva1269I GAATGC 1 cut(s) 157
NdeII GATC 1 cut(s) 184
NlaIII CATG 3 cut(s) 145, 383, 402
NspI RCATGY 1 cut(s) 402
PagI TCATGA 1 cut(s) 379
PciI ACATGT 1 cut(s) 398
PctI GAATGC 1 cut(s) 157
PfeI GAWTC 1 cut(s) 283
PkrI GCNGC 1 cut(s) 486
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
PscI ACATGT 1 cut(s) 398
Psp124BI GAGCTC 1 cut(s) 420
PspPI GGNCC 1 cut(s) 71
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
RseI CAYNNNNRTG 1 cut(s) 248
SacI GAGCTC 1 cut(s) 420
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 1 cut(s) 485
Sau3AI GATC 1 cut(s) 184
Sau96I GGNCC 1 cut(s) 71
SchI GAGTC 1 cut(s) 240
SduI GDGCHC 1 cut(s) 420
SinI GGWCC 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 248
Sse9I AATT 3 cut(s) 222, 367, 494
SsiI CCGC 2 cut(s) 69, 172
SstI GAGCTC 1 cut(s) 420
TaqI TCGA 1 cut(s) 270
TasI AATT 3 cut(s) 222, 367, 494
TfiI GAWTC 1 cut(s) 283
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TscAI CASTG 1 cut(s) 294
TseI GCWGC 1 cut(s) 484
TspDTI ATGAA 1 cut(s) 506
TspRI CASTG 1 cut(s) 294
VpaK11BI GGWCC 1 cut(s) 71
XapI RAATTY 1 cut(s) 494
XceI RCATGY 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.